mRNA_F-serratus_M_contig7598.18845.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7598.18845.1
Unique NamemRNA_F-serratus_M_contig7598.18845.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 6.720e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 2
Query:    2 RNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 421
            RNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFP LAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG
Sbjct:  457 RNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 596          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 2.140e-74
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 2
Query:   86 LERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 421
            ++RFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG
Sbjct:   87 IDRFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 198          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 4.540e-71
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 2
Query:   59 VLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 421
            VLMQ VSQE+ER+ +LY+TAEELDTRE+LPWWR TGRK FPYLAPVAQQV GNQAGAAQVERDFS CANLLTRNRSR+DTYWVEMVMFLH N++ IP FKDIPMIAAKDI TCLPPRFNGG
Sbjct:    3 VLMQHVSQEIERYHSLYITAEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGG 123          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.040e-61
Identity = 109/140 (77.86%), Postives = 111/140 (79.29%), Query Frame = 2
Query:    2 RNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 421
            +NRVRGDT+DVGEGDSEDKVLMQQVSQELERFQALYMTA E                           VLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYK IPAFKDIPMIAAKDIRTCLPPRFNGG
Sbjct:  187 KNRVRGDTKDVGEGDSEDKVLMQQVSQELERFQALYMTAGE---------------------------VLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIRTCLPPRFNGG 299          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.140e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2
Query:  173 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 421
            MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 83          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.980e-50
Identity = 82/139 (58.99%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    2 RNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 418
            R   R  T+D+ + DSED+ L + V+ ELE +++L++ A+ELD REVLPWW+ TG+ +FP+LAPVAQQV GNQA  +QVERDFS    LL  NRSR+DTYWVE+VMFL+ N+  IP  K IPM+AAK+IR+CLP RF+G
Sbjct:  146 RGDARSSTDDMADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHG 284          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.500e-32
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 2
Query:    8 RVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 418
            R  G  E+  +GD+    + Q+V+ E+ R++ ++MT+ +L   EVL +W  TGR  FP L  VAQQ  G+Q  AA VERDFS C   L  NRSR++ YWVEMVMFL+ N+K IP + +IP I +KDIR CLP +F G
Sbjct:  692 RSVGGVEESKQGDA----VEQEVANEIMRYKGVFMTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKG 824          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.620e-32
Identity = 67/116 (57.76%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   74 VSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGG 421
            VSQE+ER+  LY+TAEE   R                               A VERDFS CANLLTRNRSR+DTYWVEMVMFLH N++ IP FKDIPMIAAKDI TCLPPRFN G
Sbjct:  112 VSQEIERYHLLYITAEEGYER-------------------------------AAVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNRG 196          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.600e-30
Identity = 68/139 (48.92%), Postives = 88/139 (63.31%), Query Frame = 2
Query:    2 RNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 418
            R +VRGDTED  +G++ED+VL+QQV+ ELER+QAL++ AEE                                     VERDFS CA+LLTR+RSR+DTYWVEM+MFLH N+K +P FK+IP+I +K+IR  LP RF G
Sbjct: 1160 RTKVRGDTEDGSDGNAEDQVLVQQVTGELERYQALFVKAEE-------------------------------------VERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHVPDFKEIPVIESKNIRKALPARFTG 1261          
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.640e-28
Identity = 64/134 (47.76%), Postives = 86/134 (64.18%), Query Frame = 2
Query:   17 GDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 418
            G  E  G GD  D      V+ E++R +AL M + +L  R+VL +W+ +GR  FP L  VAQQ  G+QA AAQ+ERDFS+   L   NR+R+D YWVEMV+FL  N++ IP + DIP + +K IR CLP +F G
Sbjct:  350 GAVEQSGSGDDGDL----SVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKG 479          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7598.18845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KZ46_9PHAE6.720e-8999.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE2.140e-7498.21Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KSA7_9PHAE4.540e-7185.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE1.040e-6177.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP16_9PHAE4.140e-53100.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE1.980e-5058.99Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE2.500e-3248.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JN28_9PHAE6.620e-3257.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB56_9PHAE1.600e-3048.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE2.640e-2847.76Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7598contigF-serratus_M_contig7598:3848..4770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size684
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7598.18845.1prot_F-serratus_M_contig7598.18845.1Fucus serratus malepolypeptideF-serratus_M_contig7598 4072..4706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932281.5003254-UTR-F-serratus_M_contig7598:3847..40711622932281.5003254-UTR-F-serratus_M_contig7598:3847..4071Fucus serratus maleUTRF-serratus_M_contig7598 3848..4071 -
1690964233.1070375-UTR-F-serratus_M_contig7598:3847..40711690964233.1070375-UTR-F-serratus_M_contig7598:3847..4071Fucus serratus maleUTRF-serratus_M_contig7598 3848..4071 -
1622932281.556841-UTR-F-serratus_M_contig7598:4706..47701622932281.556841-UTR-F-serratus_M_contig7598:4706..4770Fucus serratus maleUTRF-serratus_M_contig7598 4707..4770 -
1690964233.1475146-UTR-F-serratus_M_contig7598:4706..47701690964233.1475146-UTR-F-serratus_M_contig7598:4706..4770Fucus serratus maleUTRF-serratus_M_contig7598 4707..4770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932281.5204186-CDS-F-serratus_M_contig7598:4071..44071622932281.5204186-CDS-F-serratus_M_contig7598:4071..4407Fucus serratus maleCDSF-serratus_M_contig7598 4072..4407 -
1690964233.1199746-CDS-F-serratus_M_contig7598:4071..44071690964233.1199746-CDS-F-serratus_M_contig7598:4071..4407Fucus serratus maleCDSF-serratus_M_contig7598 4072..4407 -
1622932281.535343-CDS-F-serratus_M_contig7598:4646..47061622932281.535343-CDS-F-serratus_M_contig7598:4646..4706Fucus serratus maleCDSF-serratus_M_contig7598 4647..4706 -
1690964233.1336422-CDS-F-serratus_M_contig7598:4646..47061690964233.1336422-CDS-F-serratus_M_contig7598:4646..4706Fucus serratus maleCDSF-serratus_M_contig7598 4647..4706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7598.18845.1

>prot_F-serratus_M_contig7598.18845.1 ID=prot_F-serratus_M_contig7598.18845.1|Name=mRNA_F-serratus_M_contig7598.18845.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLG
NQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDI
PMIAAKDIRTCLPPRFNGGMLTWRPLRLPST*
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mRNA from alignment at F-serratus_M_contig7598:3848..4770-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7598.18845.1 ID=mRNA_F-serratus_M_contig7598.18845.1|Name=mRNA_F-serratus_M_contig7598.18845.1|organism=Fucus serratus male|type=mRNA|length=923bp|location=Sequence derived from alignment at F-serratus_M_contig7598:3848..4770- (Fucus serratus male)
ACGAAACAGGGTCCGCGGCGATACTGAAGACGTGGGCGAGGGCGACAGCG AGGACAAGGTGCTCATGCAGCAGGTCAGCCAAGAACTCGAGCGCTTTCAG GCGCTGTACATGACGGCAGAAGAGGTGAGCTTCCTTGCAGTTTATATGAA AGTGTTTTTAATAATTTTAATTTTGAGCTTCAAGCGGGAGGGAGGGCCGG AAGGATCTGAGTTCACCGCGGTCACAGGTCAAAGTAGGGATGCGAACTGC AAGAAGTTTCAGTTTGACTTTTTTCCCGGTGGCGCAAAGTTGCACAGATG TGTTTCGTGTCGTTTTCTTATCTTCGTCCCTGCCACCCTTGGATCTGTAC TGCTGCTGTGCAGTTGGACACGCGGGAAGTACTGCCTTGGTGGCGAAACA CTGGTCGCAAGATGTTTCCGTACCTGGCGCCAGTAGCGCAGCAGGTGCTT GGAAACCAGGCGGGTGCCGCGCAGGTAGAGCGCGACTTCAGTAGTTGCGC TAATCTCCTCACGCGCAACAGGAGCCGCATCGACACCTACTGGGTAGAGA TGGTGATGTTCCTCCACGTCAACTACAAGCGTATCCCCGCGTTCAAGGAC ATTCCCATGATTGCCGCCAAGGATATCAGGACATGTCTGCCGCCACGGTT CAACGGGGGGATGCTGACCTGGCGGCCGCTGAGGCTGCCTTCGACGTGAT TGAGAACACCAACAACTCGGACATCGGCGTGTGAAAGTCGCGAGCGTTTC ATAAGTAGCCTCTTTCTTTGACTCCGTAAGAAGGACGTAGCAGTCAAAGT AGGTTGAGTCGGAGTCGCATGGGAAGGCTAAGGCTTCTGCTCTTGGGTGT TGTGTTACCGAACTTCAGTTTCGCGGTCGTAAACTAAGTACTGCGCGGCT ACGGCAGTTGATTTGATTTGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7598:3848..4770-

>mRNA_F-serratus_M_contig7598.18845.1 ID=mRNA_F-serratus_M_contig7598.18845.1|Name=mRNA_F-serratus_M_contig7598.18845.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig7598:3848..4770- (Fucus serratus male)
ATGCAGCAGGTCAGCCAAGAACTCGAGCGCTTTCAGGCGCTGTACATGAC
GGCAGAAGAGATGCAGCAGGTCAGCCAAGAACTCGAGCGCTTTCAGGCGC
TGTACATGACGGCAGAAGAGTTGGACACGCGGGAAGTACTGCCTTGGTGG
CGAAACACTGGTCGCAAGATGTTTCCGTACCTGGCGCCAGTAGCGCAGCA
GGTGCTTGGAAACCAGGCGGGTGCCGCGCAGGTAGAGCGCGACTTCAGTA
GTTGCGCTAATCTCCTCACGCGCAACAGGAGCCGCATCGACACCTACTGG
GTAGAGATGGTGATGTTCCTCCACGTCAACTACAAGCGTATCCCCGCGTT
CAAGGACATTCCCATGATTGCCGCCAAGGATATCAGGACATGTCTGCCGC
CACGGTTCAACGGGGGGATGCTGACCTGGCGGCCGCTGAGGCTGCCTTCG
ACGTGATTGGACACGCGGGAAGTACTGCCTTGGTGGCGAAACACTGGTCG
CAAGATGTTTCCGTACCTGGCGCCAGTAGCGCAGCAGGTGCTTGGAAACC
AGGCGGGTGCCGCGCAGGTAGAGCGCGACTTCAGTAGTTGCGCTAATCTC
CTCACGCGCAACAGGAGCCGCATCGACACCTACTGGGTAGAGATGGTGAT
GTTCCTCCACGTCAACTACAAGCGTATCCCCGCGTTCAAGGACATTCCCA
TGATTGCCGCCAAGGATATCAGGACATGTCTGCCGCCACGGTTCAACGGG
GGGATGCTGACCTGGCGGCCGCTGAGGCTGCCTTCGACGTGA
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