mRNA_F-serratus_M_contig7589.18839.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7589.18839.1
Unique NamemRNA_F-serratus_M_contig7589.18839.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7589.18839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7589contigF-serratus_M_contig7589:7745..10939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size178
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7589.18839.1prot_F-serratus_M_contig7589.18839.1Fucus serratus malepolypeptideF-serratus_M_contig7589 7745..10920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932280.4578376-CDS-F-serratus_M_contig7589:7744..78441622932280.4578376-CDS-F-serratus_M_contig7589:7744..7844Fucus serratus maleCDSF-serratus_M_contig7589 7745..7844 -
1690964232.708486-CDS-F-serratus_M_contig7589:7744..78441690964232.708486-CDS-F-serratus_M_contig7589:7744..7844Fucus serratus maleCDSF-serratus_M_contig7589 7745..7844 -
1622932280.4737234-CDS-F-serratus_M_contig7589:10861..109201622932280.4737234-CDS-F-serratus_M_contig7589:10861..10920Fucus serratus maleCDSF-serratus_M_contig7589 10862..10920 -
1690964232.7251177-CDS-F-serratus_M_contig7589:10861..109201690964232.7251177-CDS-F-serratus_M_contig7589:10861..10920Fucus serratus maleCDSF-serratus_M_contig7589 10862..10920 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932280.4931428-UTR-F-serratus_M_contig7589:10920..109391622932280.4931428-UTR-F-serratus_M_contig7589:10920..10939Fucus serratus maleUTRF-serratus_M_contig7589 10921..10939 -
1690964232.7375948-UTR-F-serratus_M_contig7589:10920..109391690964232.7375948-UTR-F-serratus_M_contig7589:10920..10939Fucus serratus maleUTRF-serratus_M_contig7589 10921..10939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7589.18839.1

>prot_F-serratus_M_contig7589.18839.1 ID=prot_F-serratus_M_contig7589.18839.1|Name=mRNA_F-serratus_M_contig7589.18839.1|organism=Fucus serratus male|type=polypeptide|length=53bp
MSPFWERSDSTRRHCCSRDRNDSGFEKSNVAIDATKTLSLGDAFGGKRAL
DV*
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mRNA from alignment at F-serratus_M_contig7589:7745..10939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7589.18839.1 ID=mRNA_F-serratus_M_contig7589.18839.1|Name=mRNA_F-serratus_M_contig7589.18839.1|organism=Fucus serratus male|type=mRNA|length=3195bp|location=Sequence derived from alignment at F-serratus_M_contig7589:7745..10939- (Fucus serratus male)
GCGCATCTCCGCGATAGGTATGTCACCCTTCTGGGAGAGGTCGGATTCGA
CACGTCGTCATTGCTGCAGCAGGGACAGGTGAGGGCGATAGGGGTGTATG
GATGGATGTACAGTATGCATATATGTATGTGTGTGTGCAGGTATGTGTAT
GTTGTTGTTGTTGATTCACACATTCAGCGTATTGTCCCTGCAACTGAAGA
AACTACGGTGACACAACAAGTCAGCCATAGACCTATCAAATGCTACTTCC
GCTTGTGGTCACAAAGAGGTACAAAGGTCAACGGGCCACATCATGGTGGC
AACCCGCTACTCAGACCAACAGGGATCCAAATCGCGACAAAACGTTATGC
GACTCTACAGGCAATGGCACCGACCAATATCAAAACGGTTCATCAAACCT
CCTTACTCCATACCGAGAGCAACCTCGATCGACTCGGATTGTTATCGCCT
ACCCACGACCAGCGTTCTCAGCAAAAAAACGGAAGGATTACGCTCCAACC
AGTTTTGATCAACAAAAAGTCCAAGTTTCTCAAGGCCACACAATCGTACG
GAAATAAGGAAAATTGAAATACCGAGGTCCATGGTGGTGTAGGCCTTGAG
CTGGTGAAGCCGGCGTGCGAGCCAGTATCCAGCCGTCCGAAGCCCTGCGC
ATCCCTGAAAAAGCCCCACGAATCTTGCCCGTTCGCCGCTCTTCGTGGCC
CTCGTAGGAAGAAAAATGACCGTGGTCAGATGTCAGCTTTTCCTCAGAAA
CCTCCCGGTTCAAGCCTGCACATGTGATTCTCGCGCACAGGGGTTCAGCC
CTCCCCTGGCTCGTCGACGATCGAGCTGCCCTCCGCCTTCGCCGAATCTG
GTGCGTACCCCCCCGATAGAGCACTACCAGGCTCTCCGCGACAGTGCTCC
CTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGCCACCAAATTGGGGCTCG
GAAGAGGCGCACACCTGGGAGCACCATCATCTTCAGCCAAACACACCGCC
GCCGCGTCTCAACCTACAGGCTGAATCGCGAAGACAGCCAGTTGACTGCA
CCTCTTGAGGGTGAGTCCGGCCCTACACCCGCCGGAAAGACCCTCCCACA
CTCATACCCCGAAAACAGGTTTCGGAGGGAGAGGGCACGAGGTAGTAGTA
TGTGTATATGTATGTATGTATATATATATATGTATATATGTGTGTATGTA
TGTGCATGGTCACACATATAGCAAGAATATGGATCAACCGGGTAAGGTTG
CCAATCCTGCTCGTGGTCAGCTGAACAGGAAAAAATATACATGTACGTAT
ATATGTATGTATGTATTTATGTATGCATGGATTAATGTATGTTTGTATGT
ATGTTTGTATGTATGTATGTATGTACAACTGTTGCGTGGTACAGCAGGTG
GTCTTCGATCGTTTCGGACTCACACAACCACACGAATGAAGCTCTAAGGC
CGCAACGTACAATGCAAACAGATCTGTCTGTGCAATATCTCAGAAGGTCT
AGGCGTGTTCTAGTTTTTCTATAAACATATAATCTGCACCGTGGACGTGA
CTGCTGTATACGACGCACGTTGCAAAGGCTACAGATAGAAGATGTGTTCT
CGGGACTCGATTGCATCTTCCACGTGGAGCAGCCCTAGAACGAGTGCCAA
CTGATTGATATTTTTTATTCTCTGCTTGCAGCGTCGACATGCTGCCATTG
CGACCGTCACCGCTGCGTCACAGTCACCCATGCCTGTCTCCAACCTACAC
AAGGTCTGTGTTTGAAGGCAGATTTGAACTTTTTTTGCGTCTGTCTGTCC
GGCACGCCTTCGCCCACTTCACATAGCGAAGGACTGCTCCTGCGGATAGG
CACATTATATTGTGCACCTACTGTGGCGTGGTACAGTACGTGATCTTTAA
CCATTTCCTTGCACAACCACACGAACGCAGCTCGAAGGCCGCAACGTGCC
ATGCAAAGAGTACGACTGTGCAGTACGGCTGTGCAATATGTACATACTGT
ACCGAGGACGTCAACTGCTGCACGACGCACGTTGCAAAAACAAGAGATTT
GTTCTCGGGACACGATTGTATCTTCCTCGGCGAGCAACCCTAGAACGAGT
GCCAACTGATTGATATTTTTGATTCTTAGCTTGCGGTGTGGATATTCTGC
CCCCGAGGTCGTCACCGCCGCAACACAGTCATTCATGCCTCTGTCTCCAA
GATACACGAGGTCTGTGTTTAAAGGCATATATTAGAACTTTTGCGTCCAT
CCGTCTGAGGGACGCCTTCGTATCGCTACAAACTATTTTTCTGATAACTT
TTTTTCTGATAATATCTTCGTCCGTTTTTTCCGGATTTTTCGATAACGTT
TCCTCCGAAAGCGCTTCCTCCGAAAAAAAGTGATCCGAAAACACGTTTTT
CTGATCCATAAGATCGACTTTGTGGTGGTCATCAGTTTTTTTTTTCGGTA
ACGTTTTTTCTGATCCATAAGATCGGGCCTAATTATAACAAACCATGCTA
GAAGTACCAGCACTCAAGTTATATTTTATTACTCACCCAAGTGGAAAGTA
CTACCACTCAGTTGTGTTGTATAACTCACCCAAGTGGAAAGTACTACCAC
TCAGTTATGTTGTTTAACTCACCCAGGTGGAAAGTACAACCACTCAGTTG
TGTTGTATAACTCACCCAGATGGAGAGTACTACAACTCAGTTGTGTTGAA
TAACTCACCCAGGTGGAAAGTACCACCACTCCGTTATGTTGTACAACTCA
CCGCTGAGTTATGTGAAAATGAGTTAACTTGAGTTGAGTTGTCCGATGTG
TGGAAGGCTCCAACACTAGCCAAAAAATAAATAAATAACAAGTTCAGGGA
AACAAAAAAGCAGGTTGGGGCAGGAAAAACCCCAACATGGAAGTAGAGCC
CATCGCTCCAAACTCGGAAGCTGAGTCACAAACAAACCAAAAAATATATA
GGGGTACCAATCAGGTACAAAACTAAATTTGAAGACGACGCTATCAACAA
TCACTGTCGACTGGATGAAGTGTATCAGCATGTCAGCGAGGTTCGGAAAA
CAGCAATCGTTCTCACGACAACTTGGGGCGATGTTTTTCCCGCAGGAACG
ACTCGGGCTTCGAGAAGTCTAACGTGGCCATAGATGCGACGAAGACCTTG
AGCCTAGGGGACGCTTTTGGTGGTAAGCGTGCCCTCGATGTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7589:7745..10939-

>mRNA_F-serratus_M_contig7589.18839.1 ID=mRNA_F-serratus_M_contig7589.18839.1|Name=mRNA_F-serratus_M_contig7589.18839.1|organism=Fucus serratus male|type=CDS|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig7589:7745..10939- (Fucus serratus male)
ATGTCACCCTTCTGGGAGAGGTCGGATTCGACACGTCGTCATTGCTGCAG
CAGGGACAGATGTCACCCTTCTGGGAGAGGTCGGATTCGACACGTCGTCA
TTGCTGCAGCAGGGACAGGAACGACTCGGGCTTCGAGAAGTCTAACGTGG
CCATAGATGCGACGAAGACCTTGAGCCTAGGGGACGCTTTTGGTGGTAAG
CGTGCCCTCGATGTGTAGGAACGACTCGGGCTTCGAGAAGTCTAACGTGG
CCATAGATGCGACGAAGACCTTGAGCCTAGGGGACGCTTTTGGTGGTAAG
CGTGCCCTCGATGTGTAG
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