mRNA_F-serratus_M_contig7582.18838.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7582.18838.1
Unique NamemRNA_F-serratus_M_contig7582.18838.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7582.18838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7582contigF-serratus_M_contig7582:16201..16389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog2880.D8LC03
KEGG koko:K03361,ko:K22071
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000746,GO:0000747,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030674,GO:0031145,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0044764,GO:0050789,GO:0050794,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029,ko04121
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932280.404401-CDS-F-serratus_M_contig7582:16200..163891622932280.404401-CDS-F-serratus_M_contig7582:16200..16389Fucus serratus maleCDSF-serratus_M_contig7582 16201..16389 -
1690964232.687569-CDS-F-serratus_M_contig7582:16200..163891690964232.687569-CDS-F-serratus_M_contig7582:16200..16389Fucus serratus maleCDSF-serratus_M_contig7582 16201..16389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7582.18838.1prot_F-serratus_M_contig7582.18838.1Fucus serratus malepolypeptideF-serratus_M_contig7582 16201..16389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7582.18838.1

>prot_F-serratus_M_contig7582.18838.1 ID=prot_F-serratus_M_contig7582.18838.1|Name=mRNA_F-serratus_M_contig7582.18838.1|organism=Fucus serratus male|type=polypeptide|length=63bp
LAVATSSADVDVIDLNGMKRRFTLTGHLMAVASLTALDGGDRLASGSHDT
FIRYQTKQPTLTC
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mRNA from alignment at F-serratus_M_contig7582:16201..16389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7582.18838.1 ID=mRNA_F-serratus_M_contig7582.18838.1|Name=mRNA_F-serratus_M_contig7582.18838.1|organism=Fucus serratus male|type=mRNA|length=189bp|location=Sequence derived from alignment at F-serratus_M_contig7582:16201..16389- (Fucus serratus male)
CTCGCTGTGGCGACGTCTTCGGCCGACGTAGACGTGATCGATCTCAACGG
CATGAAAAGACGATTCACGCTGACAGGACATCTCATGGCGGTGGCAAGTC
TCACTGCACTCGACGGGGGTGATAGACTAGCTTCGGGCTCACACGATACT
TTCATCAGGTATCAGACCAAGCAACCGACTTTGACTTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig7582:16201..16389-

>mRNA_F-serratus_M_contig7582.18838.1 ID=mRNA_F-serratus_M_contig7582.18838.1|Name=mRNA_F-serratus_M_contig7582.18838.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig7582:16201..16389- (Fucus serratus male)
CTCGCTGTGGCGACGTCTTCGGCCGACGTAGACGTGATCGATCTCAACGG
CATGAAAAGACGATTCACGCTGACAGGACATCTCATGGCGGTGGCAAGTC
TCACTGCACTCGACGGGGGTGATAGACTAGCTTCGGGCTCACACGATACT
TTCATCAGGTATCAGACCAAGCAACCGACTTTGACTTGTCTCGCTGTGGC
GACGTCTTCGGCCGACGTAGACGTGATCGATCTCAACGGCATGAAAAGAC
GATTCACGCTGACAGGACATCTCATGGCGGTGGCAAGTCTCACTGCACTC
GACGGGGGTGATAGACTAGCTTCGGGCTCACACGATACTTTCATCAGGTA
TCAGACCAAGCAACCGACTTTGACTTGT
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