mRNA_F-serratus_M_contig757.18828.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig757.18828.1
Unique NamemRNA_F-serratus_M_contig757.18828.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig757.18828.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.430e-18
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  239 ADILVTLAEIVPSDNFLFFAGVCRAWREAWGERPKATRAVTKHTSPSQLQECFQCGLRRRKALCVSIVGECNLEVLQCARANGCPWDANT 508
            +D+   L E V  + FLFFAGVCRAW+EAWG+RP  TRAVT+ T+ +QL + FQCGL     +C S+     L++LQCAR +GC W+  T
Sbjct:    9 SDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
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BLAST of mRNA_F-serratus_M_contig757.18828.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.230e-18
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 2 
Query:  245 ILVTLAEIVPSDNFLFFAGVCRAWREAWGERPKATRAVTKHTSPSQLQECFQCGLRRRKALCVSIVGECNLEVLQCARANGCPWDANT 508
            +L  LAE V  +  LFFA V R WR+ WG+RP  T+A+T  TS  QL   F+CGLRR  A+C ++ G   L++LQ ARA GCPW+ NT
Sbjct:   27 LLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENT 114
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BLAST of mRNA_F-serratus_M_contig757.18828.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.050e-15
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = 2 
Query:  218 MEGPLGTADILVTLAEIVPSDNFLFFAGVCRAWREAWGERPKATRAVTKHTSPSQLQECFQCGLRRRKALCVSIVGECNLEVLQCARA-NGCPWDANTSSMAARKG 532
            M  PL   DI+  L E V  + ++FFAGV R WR+AW  RP  TRA T  T   QL + F+CGL  R  +C  I     L++L  AR  + CPWD  T S A+  G
Sbjct:    1 MPNPLMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENG 106
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BLAST of mRNA_F-serratus_M_contig757.18828.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.140e-14
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:  263 EIVPSDNFLFFAGVCRAWREAWGERPKATRAVTKHTSPSQLQECFQCGLRRRKALCVSIVGECNLEVLQCARAN-GCPWDANTSSMAARKG 532
            E V  + +LFFAGV R WR+AW  RP  TRAVT  T   QL + F+CGL RR  +C  I     L++L  AR    CPWD +T S A+  G
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENG 92
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BLAST of mRNA_F-serratus_M_contig757.18828.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.150e-14
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 2 
Query:  242 DILVTLAEIVPSDNFLFFAGVCRAWREAWGERPKATRAVTKHTSPSQLQECFQCGLRR-RKALCVSIVGECNLEVLQCARANGCPWDANTSSMAA 523
            D+L ++   V    FLFFA V RAWREAWG RP  T  VT+ +S SQL+  F+ GL R R  LC +I    NLE+L+ AR +GC W+  T S AA
Sbjct:   62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig757.18828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8V2_ECTSI1.430e-1851.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE6.230e-1851.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM75_9PHAE1.050e-1543.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI1.140e-1447.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE6.150e-1449.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig757contigF-serratus_M_contig757:342080..344791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue7.1e-10
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Exons2
Model size2303
Cds size1209
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig757.18828.1prot_F-serratus_M_contig757.18828.1Fucus serratus malepolypeptideF-serratus_M_contig757 342679..343887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932277.2139294-UTR-F-serratus_M_contig757:342079..3422401622932277.2139294-UTR-F-serratus_M_contig757:342079..342240Fucus serratus maleUTRF-serratus_M_contig757 342080..342240 +
1690964231.1219888-UTR-F-serratus_M_contig757:342079..3422401690964231.1219888-UTR-F-serratus_M_contig757:342079..342240Fucus serratus maleUTRF-serratus_M_contig757 342080..342240 +
1622932277.2257648-UTR-F-serratus_M_contig757:342649..3426781622932277.2257648-UTR-F-serratus_M_contig757:342649..342678Fucus serratus maleUTRF-serratus_M_contig757 342650..342678 +
1690964231.1352007-UTR-F-serratus_M_contig757:342649..3426781690964231.1352007-UTR-F-serratus_M_contig757:342649..342678Fucus serratus maleUTRF-serratus_M_contig757 342650..342678 +
1622932277.2585638-UTR-F-serratus_M_contig757:343887..3447911622932277.2585638-UTR-F-serratus_M_contig757:343887..344791Fucus serratus maleUTRF-serratus_M_contig757 343888..344791 +
1690964231.1562402-UTR-F-serratus_M_contig757:343887..3447911690964231.1562402-UTR-F-serratus_M_contig757:343887..344791Fucus serratus maleUTRF-serratus_M_contig757 343888..344791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932277.2374392-CDS-F-serratus_M_contig757:342678..3438871622932277.2374392-CDS-F-serratus_M_contig757:342678..343887Fucus serratus maleCDSF-serratus_M_contig757 342679..343887 +
1690964231.1453433-CDS-F-serratus_M_contig757:342678..3438871690964231.1453433-CDS-F-serratus_M_contig757:342678..343887Fucus serratus maleCDSF-serratus_M_contig757 342679..343887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig757.18828.1

>prot_F-serratus_M_contig757.18828.1 ID=prot_F-serratus_M_contig757.18828.1|Name=mRNA_F-serratus_M_contig757.18828.1|organism=Fucus serratus male|type=polypeptide|length=403bp
MIARTYSAAMEGPLGTADILVTLAEIVPSDNFLFFAGVCRAWREAWGERP
KATRAVTKHTSPSQLQECFQCGLRRRKALCVSIVGECNLEVLQCARANGC
PWDANTSSMAARKGRLEVLQWAIDQGCPYDARVSAFAAEAGHLEVLRWVQ
ASSLPWDGSTCSSAAKGGHLYVLQWARENGCDWDPRTCAAAARGGHLNVL
RWAHTNGCPWDTATASSAAEGGHLNILRWARANGCPWNRLTCSAAARGGH
LEVLQWARGNACPWGGLTVSIAAEGGHFGMLRWARANGCPWGIRTCSGAA
EAGCLDIIQWARANGCPWDRLTCAAAARNGHLFVLQWVRSRDCPWDEATC
YNAAKGGHLHVLQWARANGCPWDWKTRNGAAINGHSAVVEWAIANGCPEY
IG*
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mRNA from alignment at F-serratus_M_contig757:342080..344791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig757.18828.1 ID=mRNA_F-serratus_M_contig757.18828.1|Name=mRNA_F-serratus_M_contig757.18828.1|organism=Fucus serratus male|type=mRNA|length=2712bp|location=Sequence derived from alignment at F-serratus_M_contig757:342080..344791+ (Fucus serratus male)
TCGAAAGTACGGACACATTATGTCGCTCAAATCATTCCTCGCTTGCTGTA
TGTTTCATCAGGTACCGATAGAGAACCTACGCACACGTATTTCCGACGGA
CGGGTGCAGCGCTCGCGACGGCACTACGCTATTACTAGCATCCCGGGGAG
GAATTTCGAAGGTAGATCGCACGTGTCTATTTTTGTTAGTTACAAGCGAG
CTTGGTCTCCCACCACACAGCAAAATCGCAGGATCGCAGTATCGCAGTAT
CGCAGTACTGTATCCAAGATGAATACGGTGGAAATCTGAACCGCCCAACG
TACCTGGTACCAGTTTTTGCCACAGCACAGTAAATATACTCGCGGTGGTA
TTAGTCGCACCACATATATTAATAGGACAATTGTCATTCGTGTATACCAC
ATCCGTCATTGGTGAGCTCGATGAGGCCCTCTCTCTCTTTCTCTCTAAAG
CTATACGAGGTGGATGTTACCATCCTCATCCCCTGAATTCCCTATACCAC
ATGTTGCACTTGTACATTTATTTGTCGACGTGCGGTCGGTGTCCTTCATG
GGCTTCGCGACCTTGCCCAGGCAATCAATCCTAAGCTGGACCCCGGAAGA
TGATCGCCAGGACCTACAGTGCTGCCATGGAAGGCCCGCTGGGTACTGCA
GACATTTTAGTTACATTGGCAGAGATCGTACCCAGCGATAACTTCCTCTT
TTTCGCGGGTGTGTGCAGGGCATGGAGGGAAGCTTGGGGTGAGCGACCAA
AGGCAACGCGGGCGGTGACGAAGCACACCTCCCCTTCGCAGCTCCAGGAA
TGCTTTCAGTGCGGCCTCAGGCGAAGGAAGGCGCTGTGCGTGTCCATCGT
CGGCGAGTGTAACCTAGAGGTGTTGCAGTGCGCCAGGGCGAACGGTTGTC
CATGGGACGCGAACACGAGCAGCATGGCTGCTCGAAAAGGCCGCTTGGAG
GTTTTGCAGTGGGCCATTGATCAAGGGTGCCCTTACGACGCACGGGTCTC
TGCTTTCGCCGCCGAGGCAGGTCACCTTGAAGTGCTCCGGTGGGTACAGG
CGAGCAGCCTGCCATGGGACGGCTCGACGTGCTCTTCAGCCGCCAAAGGC
GGACACCTGTACGTCCTGCAGTGGGCGAGAGAAAACGGTTGCGACTGGGA
CCCGCGCACTTGCGCCGCTGCTGCAAGAGGAGGCCACCTTAACGTTCTCC
GGTGGGCACATACTAACGGCTGCCCATGGGATACTGCGACAGCGTCGTCT
GCTGCGGAGGGAGGGCACTTGAACATCCTCCGCTGGGCTCGAGCCAACGG
CTGTCCGTGGAATCGCCTGACGTGCTCGGCGGCTGCCCGTGGAGGGCACC
TGGAAGTGCTACAGTGGGCAAGAGGTAATGCCTGCCCCTGGGGAGGTCTC
ACGGTCAGCATAGCTGCAGAGGGAGGCCACTTCGGCATGTTGCGGTGGGC
GCGTGCGAACGGGTGTCCGTGGGGTATTAGGACGTGCAGTGGCGCGGCCG
AGGCGGGCTGTTTAGACATCATCCAATGGGCACGGGCAAACGGGTGTCCT
TGGGATCGACTGACGTGTGCAGCAGCTGCGCGAAACGGCCACCTATTTGT
CCTCCAGTGGGTCAGATCCCGAGACTGCCCGTGGGACGAGGCCACTTGCT
ACAACGCTGCCAAGGGAGGACATCTACATGTCCTTCAATGGGCTCGGGCG
AACGGGTGCCCGTGGGACTGGAAAACCCGTAATGGTGCAGCGATCAACGG
CCATAGCGCTGTCGTCGAGTGGGCGATCGCGAATGGGTGTCCTGAGTACA
TTGGCTAACCGCCAGGTAGCAGAGAGAAGCAAAGCGTCAATTTTTTGCAG
GGGAGGCTCCCGGAAGGCTTCGATTTCGAGAGCTCCGTTTTGAGCTACAT
CAGCGCCTCCTTAAACAGTTTGTGTTCCACCGTCAGGGGGCAGGTGTCGA
TACCAGGTATATATTATATTCCAATGTATTTATCAAGACCAAGATTACTT
GCAACCAAGGAGAGATTTGCATGTTTACCGCACCTCTTTATAGAAGGCAT
GGGCGTTTTGCTTTCCCTCCCCCATTCATTGTCGGAAATACGTCCGTCAG
TTCATGAGTTGGTGAGATCATTCGGACTTCGGTAATATTTTGTAGACTCA
GCTCCCTGCGGCGCACGAGCATGTCTGTGTATTTCCAATCTAGTCTGTGA
ACAGTACTTCCAAGCTAGCCTGTGTTCTTCTGAGCTATTTTAAATGGTCT
GTGTTCTTCCAAGCTAAAATATGTAATGAGAGTAGAGGCTACGTGGGTGT
ACATACGTGTTTACCCTGCGTTCTCGTATATCGTATATCCTTGGACAGCG
GAGGCAGAATTCGTCCGAGACAGCCCCGGGATAACCGCGCTGATCCGCCC
CCGCCGCGTCCTCAGAGGCGCTTAGAATATATTTTTCTGGCAGTGATGCC
TTCCTCTCCCACTCGCCTCACACGGACACACGGGGTTTTATACGGAGGAA
AAAGAGTTATTGGTATTTGTTGTGTGGTTGACGGCGGATACTTTAGTAGA
ATCCTGCTCTTTTGACCTATTGATCGAGCTCTAATGTATAAGCCCCTGCG
TATATCAACGTATTCTTTATGTTCTGATAGGAGTCGCCGGGCATGGTCTG
CAGAAAGGAGTGTCCCGACTGGCAATGCTCATCCGTGTCGCCGTTTTTAT
AGCCCCTGGCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig757:342080..344791+

>mRNA_F-serratus_M_contig757.18828.1 ID=mRNA_F-serratus_M_contig757.18828.1|Name=mRNA_F-serratus_M_contig757.18828.1|organism=Fucus serratus male|type=CDS|length=2418bp|location=Sequence derived from alignment at F-serratus_M_contig757:342080..344791+ (Fucus serratus male)
ATGATCGCCAGGACCTACAGTGCTGCCATGGAAGGCCCGCTGGGTACTGC
AGACATTTTAGTTACATTGGCAGAGATCGTACCCAGCGATAACTTCCTCT
TTTTCGCGGGTGTGTGCAGGGCATGGAGGGAAGCTTGGGGTGAGCGACCA
AAGGCAACGCGGGCGGTGACGAAGCACACCTCCCCTTCGCAGCTCCAGGA
ATGCTTTCAGTGCGGCCTCAGGCGAAGGAAGGCGCTGTGCGTGTCCATCG
TCGGCGAGTGTAACCTAGAGGTGTTGCAGTGCGCCAGGGCGAACGGTTGT
CCATGGGACGCGAACACGAGCAGCATGGCTGCTCGAAAAGGCCGCTTGGA
GGTTTTGCAGTGGGCCATTGATCAAGGGTGCCCTTACGACGCACGGGTCT
CTGCTTTCGCCGCCGAGGCAGGTCACCTTGAAGTGCTCCGGTGGGTACAG
GCGAGCAGCCTGCCATGGGACGGCTCGACGTGCTCTTCAGCCGCCAAAGG
CGGACACCTGTACGTCCTGCAGTGGGCGAGAGAAAACGGTTGCGACTGGG
ACCCGCGCACTTGCGCCGCTGCTGCAAGAGGAGGCCACCTTAACGTTCTC
CGGTGGGCACATACTAACGGCTGCCCATGGGATACTGCGACAGCGTCGTC
TGCTGCGGAGGGAGGGCACTTGAACATCCTCCGCTGGGCTCGAGCCAACG
GCTGTCCGTGGAATCGCCTGACGTGCTCGGCGGCTGCCCGTGGAGGGCAC
CTGGAAGTGCTACAGTGGGCAAGAGGTAATGCCTGCCCCTGGGGAGGTCT
CACGGTCAGCATAGCTGCAGAGGGAGGCCACTTCGGCATGTTGCGGTGGG
CGCGTGCGAACGGGTGTCCGTGGGGTATTAGGACGTGCAGTGGCGCGGCC
GAGGCGGGCTGTTTAGACATCATCCAATGGGCACGGGCAAACGGGTGTCC
TTGGGATCGACTGACGTGTGCAGCAGCTGCGCGAAACGGCCACCTATTTG
TCCTCCAGTGGGTCAGATCCCGAGACTGCCCGTGGGACGAGGCCACTTGC
TACAACGCTGCCAAGGGAGGACATCTACATGTCCTTCAATGGGCTCGGGC
GAACGGGTGCCCGTGGGACTGGAAAACCCGTAATGGTGCAGCGATCAACG
GCCATAGCGCTGTCGTCGAGTGGGCGATCGCGAATGGGTGTCCTGAGTAC
ATTGGCTAAATGATCGCCAGGACCTACAGTGCTGCCATGGAAGGCCCGCT
GGGTACTGCAGACATTTTAGTTACATTGGCAGAGATCGTACCCAGCGATA
ACTTCCTCTTTTTCGCGGGTGTGTGCAGGGCATGGAGGGAAGCTTGGGGT
GAGCGACCAAAGGCAACGCGGGCGGTGACGAAGCACACCTCCCCTTCGCA
GCTCCAGGAATGCTTTCAGTGCGGCCTCAGGCGAAGGAAGGCGCTGTGCG
TGTCCATCGTCGGCGAGTGTAACCTAGAGGTGTTGCAGTGCGCCAGGGCG
AACGGTTGTCCATGGGACGCGAACACGAGCAGCATGGCTGCTCGAAAAGG
CCGCTTGGAGGTTTTGCAGTGGGCCATTGATCAAGGGTGCCCTTACGACG
CACGGGTCTCTGCTTTCGCCGCCGAGGCAGGTCACCTTGAAGTGCTCCGG
TGGGTACAGGCGAGCAGCCTGCCATGGGACGGCTCGACGTGCTCTTCAGC
CGCCAAAGGCGGACACCTGTACGTCCTGCAGTGGGCGAGAGAAAACGGTT
GCGACTGGGACCCGCGCACTTGCGCCGCTGCTGCAAGAGGAGGCCACCTT
AACGTTCTCCGGTGGGCACATACTAACGGCTGCCCATGGGATACTGCGAC
AGCGTCGTCTGCTGCGGAGGGAGGGCACTTGAACATCCTCCGCTGGGCTC
GAGCCAACGGCTGTCCGTGGAATCGCCTGACGTGCTCGGCGGCTGCCCGT
GGAGGGCACCTGGAAGTGCTACAGTGGGCAAGAGGTAATGCCTGCCCCTG
GGGAGGTCTCACGGTCAGCATAGCTGCAGAGGGAGGCCACTTCGGCATGT
TGCGGTGGGCGCGTGCGAACGGGTGTCCGTGGGGTATTAGGACGTGCAGT
GGCGCGGCCGAGGCGGGCTGTTTAGACATCATCCAATGGGCACGGGCAAA
CGGGTGTCCTTGGGATCGACTGACGTGTGCAGCAGCTGCGCGAAACGGCC
ACCTATTTGTCCTCCAGTGGGTCAGATCCCGAGACTGCCCGTGGGACGAG
GCCACTTGCTACAACGCTGCCAAGGGAGGACATCTACATGTCCTTCAATG
GGCTCGGGCGAACGGGTGCCCGTGGGACTGGAAAACCCGTAATGGTGCAG
CGATCAACGGCCATAGCGCTGTCGTCGAGTGGGCGATCGCGAATGGGTGT
CCTGAGTACATTGGCTAA
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