mRNA_F-serratus_M_contig757.18827.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig757.18827.1
Unique NamemRNA_F-serratus_M_contig757.18827.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig757.18827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig757contigF-serratus_M_contig757:269082..273957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_001820.1
Exons7
Model size1497
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932278.9084282-UTR-F-serratus_M_contig757:269081..2693831622932278.9084282-UTR-F-serratus_M_contig757:269081..269383Fucus serratus maleUTRF-serratus_M_contig757 269082..269383 +
1690964231.978778-UTR-F-serratus_M_contig757:269081..2693831690964231.978778-UTR-F-serratus_M_contig757:269081..269383Fucus serratus maleUTRF-serratus_M_contig757 269082..269383 +
1622932279.076121-UTR-F-serratus_M_contig757:273488..2739571622932279.076121-UTR-F-serratus_M_contig757:273488..273957Fucus serratus maleUTRF-serratus_M_contig757 273489..273957 +
1690964232.0890284-UTR-F-serratus_M_contig757:273488..2739571690964232.0890284-UTR-F-serratus_M_contig757:273488..273957Fucus serratus maleUTRF-serratus_M_contig757 273489..273957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932278.9236627-CDS-F-serratus_M_contig757:269383..2694611622932278.9236627-CDS-F-serratus_M_contig757:269383..269461Fucus serratus maleCDSF-serratus_M_contig757 269384..269461 +
1690964231.990165-CDS-F-serratus_M_contig757:269383..2694611690964231.990165-CDS-F-serratus_M_contig757:269383..269461Fucus serratus maleCDSF-serratus_M_contig757 269384..269461 +
1622932278.9426258-CDS-F-serratus_M_contig757:270445..2705251622932278.9426258-CDS-F-serratus_M_contig757:270445..270525Fucus serratus maleCDSF-serratus_M_contig757 270446..270525 +
1690964232.0019119-CDS-F-serratus_M_contig757:270445..2705251690964232.0019119-CDS-F-serratus_M_contig757:270445..270525Fucus serratus maleCDSF-serratus_M_contig757 270446..270525 +
1622932278.9640465-CDS-F-serratus_M_contig757:270890..2709581622932278.9640465-CDS-F-serratus_M_contig757:270890..270958Fucus serratus maleCDSF-serratus_M_contig757 270891..270958 +
1690964232.0180757-CDS-F-serratus_M_contig757:270890..2709581690964232.0180757-CDS-F-serratus_M_contig757:270890..270958Fucus serratus maleCDSF-serratus_M_contig757 270891..270958 +
1622932278.9813309-CDS-F-serratus_M_contig757:271244..2713771622932278.9813309-CDS-F-serratus_M_contig757:271244..271377Fucus serratus maleCDSF-serratus_M_contig757 271245..271377 +
1690964232.032508-CDS-F-serratus_M_contig757:271244..2713771690964232.032508-CDS-F-serratus_M_contig757:271244..271377Fucus serratus maleCDSF-serratus_M_contig757 271245..271377 +
1622932279.0000193-CDS-F-serratus_M_contig757:272304..2724001622932279.0000193-CDS-F-serratus_M_contig757:272304..272400Fucus serratus maleCDSF-serratus_M_contig757 272305..272400 +
1690964232.0494018-CDS-F-serratus_M_contig757:272304..2724001690964232.0494018-CDS-F-serratus_M_contig757:272304..272400Fucus serratus maleCDSF-serratus_M_contig757 272305..272400 +
1622932279.019413-CDS-F-serratus_M_contig757:272862..2729561622932279.019413-CDS-F-serratus_M_contig757:272862..272956Fucus serratus maleCDSF-serratus_M_contig757 272863..272956 +
1690964232.0620096-CDS-F-serratus_M_contig757:272862..2729561690964232.0620096-CDS-F-serratus_M_contig757:272862..272956Fucus serratus maleCDSF-serratus_M_contig757 272863..272956 +
1622932279.0533683-CDS-F-serratus_M_contig757:273311..2734881622932279.0533683-CDS-F-serratus_M_contig757:273311..273488Fucus serratus maleCDSF-serratus_M_contig757 273312..273488 +
1690964232.073206-CDS-F-serratus_M_contig757:273311..2734881690964232.073206-CDS-F-serratus_M_contig757:273311..273488Fucus serratus maleCDSF-serratus_M_contig757 273312..273488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig757.18827.1prot_F-serratus_M_contig757.18827.1Fucus serratus malepolypeptideF-serratus_M_contig757 269384..273488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig757.18827.1

>prot_F-serratus_M_contig757.18827.1 ID=prot_F-serratus_M_contig757.18827.1|Name=mRNA_F-serratus_M_contig757.18827.1|organism=Fucus serratus male|type=polypeptide|length=242bp
MDSTGFNIATRSDSAARTPATGVAERGSSGLEAMTADILVQVCAYIRPGD
IIRLSMASPVAFEDYVWRQLHLARYGLPRQGSVKPLPSPQASKLKLQSDH
PIHHVRMLTIRHHHSAIRSLLQRGNQCPRLIFAVETLRREEQFLREDETA
RRLNRADGRKRQHKIRAATLREFYLARRANVNERTTLGNIRATVERHAYP
PGRRPTNTQPVSWLDRNKGVDTTTGGIVCRRPSLAGIFCHE*
back to top

mRNA from alignment at F-serratus_M_contig757:269082..273957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig757.18827.1 ID=mRNA_F-serratus_M_contig757.18827.1|Name=mRNA_F-serratus_M_contig757.18827.1|organism=Fucus serratus male|type=mRNA|length=4876bp|location=Sequence derived from alignment at F-serratus_M_contig757:269082..273957+ (Fucus serratus male)
GCTTCACCCGTACAGTCTCACCCTGTTGCCGAAAGGCTACAGAATCAGCG
GTTTCAACCTTGTCTACCATTACCCTTGCTCATCTCGAAGTTCATCCGGT
GCACCTTGTAGTGGCGCCCAAGGCACGCAGTAAAACGTGCTGCACAGCAG
TACCAAAGTGCACCTCGTTCGGCTGTCCAGTACATATGGTTATTTTGCCG
TTGAGGGATACCAATAATTAGCCGAATCCTTCTGGGGAGGCGATACTTTG
AAGAGGCGAGACGTACGTGTATGCCGGATAGGATAGCGGGCGCCAACCGC
ACATGGATTCTACAGGCTTTAATATAGCCACAAGATCTGACTCTGCTGCG
AGAACACCCGCGACAGGAGTTGCGGAACGGGTAATGAAAGAATCAAACGC
GTTACGATCGCTCCAAGTAGCGCAAGCTTCGAGATGCATCTTATCCCACG
ATAGAGAATTACATATTTTTTCGAGGTCTGATGTGGTGGCCAGCTTGCTC
TTGTGCAAACGTATCCTGTGCTATTTTTTACCATTGACAGTCGGGATCCC
ATCGCCACACACTCGCAAGATGAAAATCCGTCAGGATGTTTGTACCATGA
GGAGGCTCATATACCTCGGTTTGTGTATTTTTGCGATGATCATTCCGTAC
TTACTGCGTAGACGTCATCTTCGTATAGTCGCGCCGCGTAAGATGGCGTT
CATTCTCAATATTAGTGTGGTTTTTGAGGAAATGAAGAGATACTAATAAT
ATTGGAAATGGCTATTTGGCCCACCGGTGGGCCAGTCCCAAATTTACCCC
ACCACCTGTAACTGGCATCAGAAGACACGGTTGGCCACAGTACATGCATG
AGTGTATTGGCGCGTCGCAGGGCTACCATGGGGTCTGTCGTGCAGCCCAA
ACGGTCCTGTCGACGTGCTGTTACGGCCGGTGGGGTGGTTGGCGTTTTCT
GGTATGTAAGGGTAAATAGCCAAACATACCAGAAAAAACCAACCACCCCA
CCGGCCGTGGCAGCACGTAGACAGGACCGTTTGGGCTGCACGATAGACCC
CATGATAGCTAACCCTAACCCTAACACGCCCATGCATGTACTGTGACCAA
CCAAGTCTTCTGACGCGAGAACCAGGTGGGGGGGTAAACAAGAGAATAGC
CCACCGGTGGGGCAAATAGCCATACCGATTAATATTTTACTCAAAAACTT
TCTGCTTGCAAATACGAAGTACAAGACCAAAAAATGGGGGGAAAAGTGTT
GAAATTCGTCTGCCATTAGCTTCAATGATATTTCAACTCTAACTATAAGT
AGTATTGGTCTGAGGCTGTTCCCGACGATCCTCCTACATGCTGCATCGCC
GAATTCAATGCAAGGGCTCGTCGGGGTTGGAGGCCATGACAGCCGATATT
CTGGTTCAGGTTTGCGCGTACATTCGACCTGGTGATATCATCAGGTCCGC
CAAAATATTGCAGGATGGGCGCAGTTCTTTAGACGGTATTTGGGGTTTTA
GTTTTGCAGTGGGGCATTGCAGTAGTACTACCTTGGATAGATTATAATTC
TCCACCACTGTCGGAGCAGCATTGGGTTCAAGTTTTGCTGTGTGGTCGGC
AGTACCTTCGATAGGCTAGAATTTTCCACCATCCCCAAAGCACACTCACA
CGGGCATCTTGACCGAAAATTCACACCGTGTGTATATTGAAGTCGCGATC
ACATGACAAGCGCATCATCCGATTTCCTTCAAAGAGATGTCCTCGCATTC
ATTCGTTTCCTTGATGCCTCTCCGCCCTTACGGCACATACTACCACGCCC
TGGTCCTAGATTGTCCATGGCGTCTCCCGTCGCTTTCGAGGATTATGTGT
GGCGGCAGCTACATCTCGCTCGATACGGTGAGATGAAGGGCAAACGGTCG
ATCAGATACAATACTTCCGTTGATTCATCGACAGTACGTGCTAGTATTTC
GACCGACTCTCAGGAGTGAGGGAGACTGATGGTCAATCGCGAGATCCTAA
ATGCGATTTTACACAGTACCACTACAACCTGCCATATTCGAAAACTACGC
TGTAACGCACGGGCTGGGCGGTCAGATGTCCATAGGAAAATAAATTTCAA
AAAGTCCCAGTTCAGGTGCTCGCACATCCTCCGAGCGTCATGGTGAATCG
CTTCTGTCTCCAGGCCTACCAAGACAAGGTTCCGTCAAGCCCCTTCCTTC
TCCCCAAGCTTCAAAGCTGAAGCTCCAAAGTGACCATCCGATCCACCACG
TCCGCATGCTTACTATTCGACATCATCACTCGGCTATTCGTTCACTGTGA
GAATTTTCCAGCCAGTTGTCGTAGGAGAGTTCTTGACGGTATTGAGTTGC
ACAGAGGGTACAGATGAAGTATTGCTGAAGGAGGTTGTTGGTAGAGTAAT
GAATGGTATTGAGCCCGGTGGTTCAGACACCCATTCGGGCTCGAGCTTTT
CCCGTTAGTATCCCCTGCCATCGCCCTAATAGTAACTTGTAGCCAATCGT
CGTAAACTGAAGGTATTTCTTTTGAAGAACGTACTATCAATATTAATAGT
ACGCAATAATACTTAATAATATCGTATTTTACAAAATTGTTGCCCATGAT
TCCTAGTAATCGATCAAAAGTCGCAGAGATGTCAAAGTTACTCCATTCCT
AAATTTTAGTATGTGCAGTACGCAATTGAGTTCACATTGTTGCAAAATCG
CAGTCGTCGTGACGGAGCTAGCTTAACTCCAAGTTCTTGGCATTCGTAAT
ATGTGTGGCAAAGCTACATGAAGCGGCCATTTTTTCGGACAGAGCTTGAC
CAATGCGGCTCAGTCAGGCTGAGTCTACAGCATGCCCGGAATCCGATGTA
GATAAGGGGCTCGATCTATTTTGTCAATATCGTAACTCCACCCGCTTAGG
CTTATTATACTATAATGTCAATATCTTAAGAACTTCTCCACGAATGGACC
GTGACAAGCGATTTCCACATAATAAATAAAAACTAAAACGTTGCAGAACG
GTATCTATTTCTTCAAGTTCACGCCAATCGCCTGTCAGCCTCGACAATTT
GTATGACCATTAGCGCGTCGTGACGCGAAATCTACCGAAGTCCCACGGTG
AATGGCCATAATACCGTATTATTAATATATTGTACAAGTCTTGGACGATC
AAACCGCGCCTCGCTCATTCTAACATCTGATCTGCTGCATTCTCAACTGT
TACGCCACCAATTACTCGTCAAGGTTACAGAGGGGCAATCAATGCCCACG
TTTGATATTTGCCGTCGAAACCCTGCGACGGGAGGAACAGTTTTTACGCG
AAGACGAGACTGCTAGACGGTGAGAACAAGAATCATAATCATTCATACAA
TGGCGCAAAGCAGGACGACTCAAGAACAGCATGTGCAGCATGTACAGTAT
GCCATTCGCACGATTTCGCGAGGAAAAATGTAGACCAGTTCACGCCAGTA
GTGTCCCTTGAATAGTATATATATCATCCCTTTCAAGTTCTCGATTGCGT
ACATGTAGGCCTTCATATACGAATCGCCTTATTTAGCTTATACGTTCGGA
GTATCATGTTGTTAAACTAAGCAGTACGGTACTAGAACCCACCCAGGCGT
TTCAAGGTTGTGGGTGCCGATCGCCCTTCTGGCGCGCACGAAATCCCGAT
CAGATGGGCCGATTGGGTACGCTCTGGTTGTCATTTGATCATCGTCGTTA
TCTGCCATCCCTTGAAGGTGAATTCAATAGATTGGACTCGCTGTCTCCTG
TGCATGTTTTATGTTATACTCGTGGACAAAGACTCAACAGGGCGGATGGT
AGAAAGAGGCAACACAAGATTCGGGCGGCCACCCTGCGAGAGTTTTATCT
TGCTAGGAGAGCCAACGTTAATGAGGTTCGCTGTTTGCCATTTACAGGGC
GTGAGTCCACGGCTGTTTGCGAGTGGTTGCGGAGTGTTCGGCTTTTGTTT
TGTCCTTGAAGCAATATCGCTACTGTAGAGCAGGTCGTCGTGTGGAAGCA
ATATCGCAACCACACTCTTGTTTTCTTTCTTTCCGACGTCATTTGCGTCA
TCTTCCTTTGCTACGCATTCTTGCTTCACGTCGTTGCCCAGTTCCATTTA
TCTTGCCACCTGCTCGGTACGCGCCAGGTTGAGAATATGTTTCGTCCAAC
TTACGGGCCACCCTCCAGAACCTTCTAACCCCCCCCCCCATCTTACCGTT
ACTATTTGTACCTTGTTGTCGTGACAAAAGCGAACGACACTTGGAAACAT
ACGGGCCACGGTGGAGCGTCACGCTTACCCTCCTGGTCGACGACCGACAA
ATACTCAACCGGTGTCGTGGCTAGATCGGAACAAGGGAGTAGACACTACA
ACAGGGGGCATAGTATGTCGCCGTCCTTCCCTGGCCGGTATTTTTTGCCA
TGAATGACGTCTGACACTTAGGGAAAGGATGTTGCGTTTTTCTAAAGGGA
CGGGGGAGGTAGGTAGTTGATAATCCCGAATGGCATTCGAGGTATAGATA
GCACGAGGTTTGCTCGAAGTTTCGAAGAAACTTATAATATGGCGGGATAT
TTTAGATGCGAACAACTCTCTCCCTTTCCCTGATGGCCTGTAGTAAGATG
TTGTAACCACCTTCATTTCTAGGGACTTCGTACAAAGTTGTAATTTATCG
TGCTTCGACACGATCGAAATTCCCTACACAATACGACGAACCCAACAATT
TGTTACAGATGATTCGGAGGGGAAAATGAGGCTACGAAAAAGTGCTCGCC
GTTTAATACGTATAGAAAACATAATGCGCACTACGACTGTCTTCTCTCGA
ATGTGTAGGGTGTAATCCTGAACTCTGGACTTGAACAGAGTTGAGAGGCA
GATCAACGATTAAACAAAACAGGTAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig757:269082..273957+

>mRNA_F-serratus_M_contig757.18827.1 ID=mRNA_F-serratus_M_contig757.18827.1|Name=mRNA_F-serratus_M_contig757.18827.1|organism=Fucus serratus male|type=CDS|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig757:269082..273957+ (Fucus serratus male)
ATGGATTCTACAGGCTTTAATATAGCCACAAGATCTGACTCTGCTGCGAG
AACACCCGCGACAGGAGTTGCGGAACGGATGGATTCTACAGGCTTTAATA
TAGCCACAAGATCTGACTCTGCTGCGAGAACACCCGCGACAGGAGTTGCG
GAACGGGGCTCGTCGGGGTTGGAGGCCATGACAGCCGATATTCTGGTTCA
GGTTTGCGCGTACATTCGACCTGGTGATATCATCAGGGCTCGTCGGGGTT
GGAGGCCATGACAGCCGATATTCTGGTTCAGGTTTGCGCGTACATTCGAC
CTGGTGATATCATCAGATTGTCCATGGCGTCTCCCGTCGCTTTCGAGGAT
TATGTGTGGCGGCAGCTACATCTCGCTCGATACGATTGTCCATGGCGTCT
CCCGTCGCTTTCGAGGATTATGTGTGGCGGCAGCTACATCTCGCTCGATA
CGGCCTACCAAGACAAGGTTCCGTCAAGCCCCTTCCTTCTCCCCAAGCTT
CAAAGCTGAAGCTCCAAAGTGACCATCCGATCCACCACGTCCGCATGCTT
ACTATTCGACATCATCACTCGGCTATTCGTTCACTGCCTACCAAGACAAG
GTTCCGTCAAGCCCCTTCCTTCTCCCCAAGCTTCAAAGCTGAAGCTCCAA
AGTGACCATCCGATCCACCACGTCCGCATGCTTACTATTCGACATCATCA
CTCGGCTATTCGTTCACTGTTACAGAGGGGCAATCAATGCCCACGTTTGA
TATTTGCCGTCGAAACCCTGCGACGGGAGGAACAGTTTTTACGCGAAGAC
GAGACTGCTAGACGGTTACAGAGGGGCAATCAATGCCCACGTTTGATATT
TGCCGTCGAAACCCTGCGACGGGAGGAACAGTTTTTACGCGAAGACGAGA
CTGCTAGACGACTCAACAGGGCGGATGGTAGAAAGAGGCAACACAAGATT
CGGGCGGCCACCCTGCGAGAGTTTTATCTTGCTAGGAGAGCCAACGTTAA
TGAGACTCAACAGGGCGGATGGTAGAAAGAGGCAACACAAGATTCGGGCG
GCCACCCTGCGAGAGTTTTATCTTGCTAGGAGAGCCAACGTTAATGAGCG
AACGACACTTGGAAACATACGGGCCACGGTGGAGCGTCACGCTTACCCTC
CTGGTCGACGACCGACAAATACTCAACCGGTGTCGTGGCTAGATCGGAAC
AAGGGAGTAGACACTACAACAGGGGGCATAGTATGTCGCCGTCCTTCCCT
GGCCGGTATTTTTTGCCATGAATGACGAACGACACTTGGAAACATACGGG
CCACGGTGGAGCGTCACGCTTACCCTCCTGGTCGACGACCGACAAATACT
CAACCGGTGTCGTGGCTAGATCGGAACAAGGGAGTAGACACTACAACAGG
GGGCATAGTATGTCGCCGTCCTTCCCTGGCCGGTATTTTTTGCCATGAAT
GA
back to top