mRNA_F-serratus_M_contig7567.18821.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7567.18821.1
Unique NamemRNA_F-serratus_M_contig7567.18821.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7567.18821.1 vs. uniprot
Match: A0A6H5JTG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.310e-8
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 MDVHFRLLRQDFVEPLREAVLGYRREQ 81
            +D HFRLLRQDFVEPLR+AVLGYRREQ
Sbjct:   70 LDTHFRLLRQDFVEPLRDAVLGYRREQ 96
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BLAST of mRNA_F-serratus_M_contig7567.18821.1 vs. uniprot
Match: D8LCR9_ECTSI (NF-X1 finger and helicase domain protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.120e-8
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 MDVHFRLLRQDFVEPLREAVLGYRREQ 81
            +D HFRLLRQDFVEPLREAVLGYRREQ
Sbjct:  379 LDTHFRLLRQDFVEPLREAVLGYRREQ 405
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7567.18821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTG9_9PHAE1.310e-888.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR9_ECTSI5.120e-892.59NF-X1 finger and helicase domain protein, putative... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7567contigF-serratus_M_contig7567:1048..1158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932277.0769641-CDS-F-serratus_M_contig7567:1047..11581622932277.0769641-CDS-F-serratus_M_contig7567:1047..1158Fucus serratus maleCDSF-serratus_M_contig7567 1048..1158 +
1690964231.0744405-CDS-F-serratus_M_contig7567:1047..11581690964231.0744405-CDS-F-serratus_M_contig7567:1047..1158Fucus serratus maleCDSF-serratus_M_contig7567 1048..1158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7567.18821.1prot_F-serratus_M_contig7567.18821.1Fucus serratus malepolypeptideF-serratus_M_contig7567 1048..1158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7567.18821.1

>prot_F-serratus_M_contig7567.18821.1 ID=prot_F-serratus_M_contig7567.18821.1|Name=mRNA_F-serratus_M_contig7567.18821.1|organism=Fucus serratus male|type=polypeptide|length=37bp
MDVHFRLLRQDFVEPLREAVLGYRREQKDVSTLNCF*
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mRNA from alignment at F-serratus_M_contig7567:1048..1158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7567.18821.1 ID=mRNA_F-serratus_M_contig7567.18821.1|Name=mRNA_F-serratus_M_contig7567.18821.1|organism=Fucus serratus male|type=mRNA|length=111bp|location=Sequence derived from alignment at F-serratus_M_contig7567:1048..1158+ (Fucus serratus male)
ATGGATGTCCACTTTCGACTTCTGCGCCAGGACTTCGTCGAGCCCTTGCG
CGAGGCGGTGCTCGGCTATCGCCGTGAGCAGAAGGATGTGAGCACCCTGA
ACTGTTTTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7567:1048..1158+

>mRNA_F-serratus_M_contig7567.18821.1 ID=mRNA_F-serratus_M_contig7567.18821.1|Name=mRNA_F-serratus_M_contig7567.18821.1|organism=Fucus serratus male|type=CDS|length=222bp|location=Sequence derived from alignment at F-serratus_M_contig7567:1048..1158+ (Fucus serratus male)
ATGGATGTCCACTTTCGACTTCTGCGCCAGGACTTCGTCGAGCCCTTGCG
CGAGGCGGTGCTCGGCTATCGCCGTGAGCAGAAGGATGTGAGCACCCTGA
ACTGTTTTTAAATGGATGTCCACTTTCGACTTCTGCGCCAGGACTTCGTC
GAGCCCTTGCGCGAGGCGGTGCTCGGCTATCGCCGTGAGCAGAAGGATGT
GAGCACCCTGAACTGTTTTTAA
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