mRNA_F-serratus_M_contig756.18820.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig756.18820.1
Unique NamemRNA_F-serratus_M_contig756.18820.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig756.18820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig756contigF-serratus_M_contig756:331127..332210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig756.18820.1prot_F-serratus_M_contig756.18820.1Fucus serratus malepolypeptideF-serratus_M_contig756 331127..331561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932276.2783582-CDS-F-serratus_M_contig756:331126..3315611622932276.2783582-CDS-F-serratus_M_contig756:331126..331561Fucus serratus maleCDSF-serratus_M_contig756 331127..331561 -
1690964230.7413375-CDS-F-serratus_M_contig756:331126..3315611690964230.7413375-CDS-F-serratus_M_contig756:331126..331561Fucus serratus maleCDSF-serratus_M_contig756 331127..331561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932276.296046-UTR-F-serratus_M_contig756:331561..3316271622932276.296046-UTR-F-serratus_M_contig756:331561..331627Fucus serratus maleUTRF-serratus_M_contig756 331562..331627 -
1690964230.7524278-UTR-F-serratus_M_contig756:331561..3316271690964230.7524278-UTR-F-serratus_M_contig756:331561..331627Fucus serratus maleUTRF-serratus_M_contig756 331562..331627 -
1622932276.3146956-UTR-F-serratus_M_contig756:332063..3322101622932276.3146956-UTR-F-serratus_M_contig756:332063..332210Fucus serratus maleUTRF-serratus_M_contig756 332064..332210 -
1690964230.7623672-UTR-F-serratus_M_contig756:332063..3322101690964230.7623672-UTR-F-serratus_M_contig756:332063..332210Fucus serratus maleUTRF-serratus_M_contig756 332064..332210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig756.18820.1

>prot_F-serratus_M_contig756.18820.1 ID=prot_F-serratus_M_contig756.18820.1|Name=mRNA_F-serratus_M_contig756.18820.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MESISSTLQEPVGGSVASESLSMLSTTNARRAAKKNMKKRRYKFNKKARR
ALARFYMMIMTELREYFSRSFDPKRQTKRAECIKTSKEAEEGKFMAFEDS
WSRTAMNEVEQMTDVLKEVEAMAYEDIMSTMVNNKDEEMVVVMME
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mRNA from alignment at F-serratus_M_contig756:331127..332210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig756.18820.1 ID=mRNA_F-serratus_M_contig756.18820.1|Name=mRNA_F-serratus_M_contig756.18820.1|organism=Fucus serratus male|type=mRNA|length=1084bp|location=Sequence derived from alignment at F-serratus_M_contig756:331127..332210- (Fucus serratus male)
AAAAAACTACAGGGAAGCGGATTCGTAACTTCCTTCAACACGGTCGGCCG
CCTGGAAGCTTCTCTTGAGGTCTGGTTACCACCAATAGAGCCTTGAGTGC
ATCCGCAGCGTTGAAGACTATCTATATTGTCGGCGCAAGCGAAATAGGCA
AGCACATGGCCTTCGTCTTGCCCTCAGGAATGACCAGAGCCAACGAACCC
AACACTTCGACGAAGACCGCTAACATCCGCTCCAAACCACGCGGCGACCG
CGACACGATGCATACGTCGTCAGAACAAAGCATTCCTCAAATTCACCACG
CGCATTTCAGTGCTGTTTAAGGGTGAACCTTTGGCGGCTGCGTAGATCCG
GTGTCTCTTCCATGAATGAATAATAATTTTGAAGGACGTTTCTTCCTCCC
CGCTCGAGCTTTACGATTTATCTTCGGACAAAATAACAACTTTGAAGTTG
GAAATTTTAAACCGTAATACGTGCTACAGCATTATCTTCGATGTAGACTT
TAAATTGGTGAGATCAACTTCCGAATGAAACAAAATTACACTCAACTGAT
CCAAAGACCCCACTCGGCATTTGCATCAAGCAGGGGAACAGCCTCGCCAC
GATCACTTCGACTCGGACACCGGCACTACCAGGAAATCGGTGTACAGCAA
TGGAGTCGATTTCCTCTACCCTCCAGGAGCCAGTAGGCGGCAGCGTGGCG
TCCGAATCTTTGTCTATGCTCTCGACGACTAATGCTCGGAGAGCCGCCAA
GAAAAATATGAAAAAGCGGCGCTATAAATTTAACAAGAAAGCACGCAGGG
CTTTGGCGCGTTTTTACATGATGATCATGACCGAGCTAAGGGAATATTTT
TCTCGATCATTCGATCCGAAGCGCCAAACGAAGCGCGCGGAATGTATAAA
AACAAGCAAGGAGGCAGAGGAGGGGAAATTCATGGCCTTTGAGGATAGCT
GGTCAAGAACGGCCATGAATGAGGTGGAACAAATGACGGATGTATTGAAG
GAGGTGGAGGCCATGGCCTATGAGGATATCATGTCAACAATGGTGAATAA
TAAAGACGAGGAGATGGTGGTGGTAATGATGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig756:331127..332210-

>mRNA_F-serratus_M_contig756.18820.1 ID=mRNA_F-serratus_M_contig756.18820.1|Name=mRNA_F-serratus_M_contig756.18820.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig756:331127..332210- (Fucus serratus male)
ATGGAGTCGATTTCCTCTACCCTCCAGGAGCCAGTAGGCGGCAGCGTGGC
GTCCGAATCTTTGTCTATGCTCTCGACGACTAATGCTCGGAGAGCCGCCA
AGAAAAATATGAAAAAGCGGCGCTATAAATTTAACAAGAAAGCACGCAGG
GCTTTGGCGCGTTTTTACATGATGATCATGACCGAGCTAAGGGAATATTT
TTCTCGATCATTCGATCCGAAGCGCCAAACGAAGCGCGCGGAATGTATAA
AAACAAGCAAGGAGGCAGAGGAGGGGAAATTCATGGCCTTTGAGGATAGC
TGGTCAAGAACGGCCATGAATGAGGTGGAACAAATGACGGATGTATTGAA
GGAGGTGGAGGCCATGGCCTATGAGGATATCATGTCAACAATGGTGAATA
ATAAAGACGAGGAGATGGTGGTGGTAATGATGGAGATGGAGTCGATTTCC
TCTACCCTCCAGGAGCCAGTAGGCGGCAGCGTGGCGTCCGAATCTTTGTC
TATGCTCTCGACGACTAATGCTCGGAGAGCCGCCAAGAAAAATATGAAAA
AGCGGCGCTATAAATTTAACAAGAAAGCACGCAGGGCTTTGGCGCGTTTT
TACATGATGATCATGACCGAGCTAAGGGAATATTTTTCTCGATCATTCGA
TCCGAAGCGCCAAACGAAGCGCGCGGAATGTATAAAAACAAGCAAGGAGG
CAGAGGAGGGGAAATTCATGGCCTTTGAGGATAGCTGGTCAAGAACGGCC
ATGAATGAGGTGGAACAAATGACGGATGTATTGAAGGAGGTGGAGGCCAT
GGCCTATGAGGATATCATGTCAACAATGGTGAATAATAAAGACGAGGAGA
TGGTGGTGGTAATGATGGAG
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