mRNA_F-serratus_M_contig756.18819.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig756.18819.1
Unique NamemRNA_F-serratus_M_contig756.18819.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig756.18819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig756contigF-serratus_M_contig756:328321..330456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog164328.Phyra94220
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.EF-hand domain pair
EggNOG OGs3QCJD@4776,KOG2562@1,KOG2562@2759
COG Functional cat.A
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons4
Model size1136
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig756.18819.1prot_F-serratus_M_contig756.18819.1Fucus serratus malepolypeptideF-serratus_M_contig756 328781..330431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932276.142564-UTR-F-serratus_M_contig756:328320..3287801622932276.142564-UTR-F-serratus_M_contig756:328320..328780Fucus serratus maleUTRF-serratus_M_contig756 328321..328780 -
1690964230.6651802-UTR-F-serratus_M_contig756:328320..3287801690964230.6651802-UTR-F-serratus_M_contig756:328320..328780Fucus serratus maleUTRF-serratus_M_contig756 328321..328780 -
1622932276.2279751-UTR-F-serratus_M_contig756:330431..3304561622932276.2279751-UTR-F-serratus_M_contig756:330431..330456Fucus serratus maleUTRF-serratus_M_contig756 330432..330456 -
1690964230.7316613-UTR-F-serratus_M_contig756:330431..3304561690964230.7316613-UTR-F-serratus_M_contig756:330431..330456Fucus serratus maleUTRF-serratus_M_contig756 330432..330456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932276.1570659-CDS-F-serratus_M_contig756:328780..3291071622932276.1570659-CDS-F-serratus_M_contig756:328780..329107Fucus serratus maleCDSF-serratus_M_contig756 328781..329107 -
1690964230.6797705-CDS-F-serratus_M_contig756:328780..3291071690964230.6797705-CDS-F-serratus_M_contig756:328780..329107Fucus serratus maleCDSF-serratus_M_contig756 328781..329107 -
1622932276.1836023-CDS-F-serratus_M_contig756:329625..3297131622932276.1836023-CDS-F-serratus_M_contig756:329625..329713Fucus serratus maleCDSF-serratus_M_contig756 329626..329713 -
1690964230.6906095-CDS-F-serratus_M_contig756:329625..3297131690964230.6906095-CDS-F-serratus_M_contig756:329625..329713Fucus serratus maleCDSF-serratus_M_contig756 329626..329713 -
1622932276.1995804-CDS-F-serratus_M_contig756:330018..3301401622932276.1995804-CDS-F-serratus_M_contig756:330018..330140Fucus serratus maleCDSF-serratus_M_contig756 330019..330140 -
1690964230.7054136-CDS-F-serratus_M_contig756:330018..3301401690964230.7054136-CDS-F-serratus_M_contig756:330018..330140Fucus serratus maleCDSF-serratus_M_contig756 330019..330140 -
1622932276.214697-CDS-F-serratus_M_contig756:330317..3304311622932276.214697-CDS-F-serratus_M_contig756:330317..330431Fucus serratus maleCDSF-serratus_M_contig756 330318..330431 -
1690964230.7178454-CDS-F-serratus_M_contig756:330317..3304311690964230.7178454-CDS-F-serratus_M_contig756:330317..330431Fucus serratus maleCDSF-serratus_M_contig756 330318..330431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig756.18819.1

>prot_F-serratus_M_contig756.18819.1 ID=prot_F-serratus_M_contig756.18819.1|Name=mRNA_F-serratus_M_contig756.18819.1|organism=Fucus serratus male|type=polypeptide|length=217bp
MHVTYMFVAYWQSEVAPFDGCERYFRMVANPRTGTIPKAELQPFILAMVR
RHPDLSSIFLDDGSHYVNNVLAVAFHKHSCGVLRSKKLKGSGFVTFFNTV
GRLEASLEGNSLATTTSTRTTAALPGNRCTAMESISSTLQEPVGGIVESE
CLFKLSTANARRAAKKKMKKRRYKFNKKARRALARFYMMVMTELREYFSR
SIDPKRQTKRAECKIG*
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mRNA from alignment at F-serratus_M_contig756:328321..330456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig756.18819.1 ID=mRNA_F-serratus_M_contig756.18819.1|Name=mRNA_F-serratus_M_contig756.18819.1|organism=Fucus serratus male|type=mRNA|length=2136bp|location=Sequence derived from alignment at F-serratus_M_contig756:328321..330456- (Fucus serratus male)
CCTTACCGTGAAACCGCTGCCTCCGATGCATGTCACGTATATGTTCGTGG
CTTATTGGCAAAGTGAAGTTGCACCGTTCGACGGATGTGAGCGATACTTC
AGAATGGTCGCAAACCCTAGGACCGGTACCATCCCCAAGGTACAATTTAG
TTCGATAAAGTACAGTACGGGATGGGGCAGTGATGCACATAACTGGTAGT
AATGGAAGTCCCTTGGCTGCTCCGCCTGCTTTGATTCATGCTTCTGTTGT
CTTCGTCTATGGTGCATTAGTTGACCCCATTTTCTACCAACGTGATCCCC
ACACCTCCGTCCCTAGGCGGAGCTGCAGCCGTTTATTCTTGCGATGGTGC
GAAGGCACCCCGACCTTAGCTCCATATTCCTGGACGATGGATCTCATTAC
GTGAACAATGTGCTGGCTGTAGCCTTCCACAAGCATAGGTAGGCTGAGTG
AAGAGAGGTACCGTACTCGTTGGCGATGGATGTGACTTGCCGGCACCATA
CCGTATTATTGTAGAAGGCTTTCGGATCTCGATATGCAACGCAGCTTCTA
CCACCAATAGGTTACTCTTCTACCCGATAGTTCCCTTGCCGATCGGATCC
CGGCGGTGAGTTCCGAGTTCCTTCTCTCTCGCCGCTTTGCCCCGCTGTCC
CACTATCATTTCATTGAGATAAATAATCTGACCAATTTCGACGATACGTT
GCGGCCTGTCCTGATTGTTTCTTGTGTTGCTACATTCCAGCAGTTGTGGT
GTCTTGAGATCGAAAAAACTCAAGGGAAGCGGATTCGTAACTTTCTTCAA
CACGGTCGGCCGCCTGGAAGCATCCCTTGAGGTCTGGTTACCATCAATAG
AGCCTTGAGTGCATCCGCAGCGTAGAAGACTATCTACATTGTCGGCGCAA
GCGAAATCGGCAAGCACATGGCCTCCGTCTTGCCCTCAGGAATGGCCAGA
GTCAATGAACCCAACACTTCGACGAAGACCGCTAACATCCGCTCCAAACC
ACGCGGCGACCGCGACATGATGTACACGTCGTCAGAACAAAGCATTCCTC
AAATACACCACGCGCATTTCAGTGCTGTTTTCGGGTAAACCTTTGGCGGC
TACGTAGATCCGGTGTCTCTTCCATGGATGAATAATAATTTTGAAGGACC
TTTCCTCCTCCCCGCTCGAGCTTTACAATTTATCCTCGGACAAAATAATA
AGTAAGTTTGAAGTTGGAAATTTTAAACCGTAATACGTGCTACAGCATTA
TCTTCGATGTAGACTTTAAGTTGATCAGATCAACTTCCGAATGGAACAAC
ATTATACTCAACTGATCCAAAGACCTCACCCGGCATTTGCATCAAGCAGG
GGAACAGCCTCGCCACGACCACTTCGACTCGGACGACTGCAGCACTACCA
GGAAATCGGTGTACAGCAATGGAGTCGATTTCCTCTACTCTCCAGGAGCC
AGTAGGCGGTATCGTGGAGTCCGAATGTTTGTTTAAGCTCTCGACGGCTA
ATGCTCGGAGAGCCGCCAAGAAAAAGATGAAAAAGCGGCGCTATAAATTT
AACAAGAAAGCACGCAGGGCTTTGGCGCGTTTTTACATGATGGTCATGAC
CGAGCTAAGGGAATATTTTTCTCGATCAATCGATCCGAAGCGCCAAACGA
AGCGAGCGGAATGTAAGATAGGTTAGCTATCGCTCTACGCTCGCTAAAGG
ATAGTTGTGTAACTATCGTCAGCTTAATACAGGTGCCGGTGTAATGTATG
GTTTGTGGTTGGCTTGTTGTACTGGCGTCGTCCTCAACACTGTACGGAAA
AGTGCGGCGCGCCTGATCTTAAGAAAAGAAGCAGGCTGACGCAGCAGGTA
GTCGCCTTTCTCGAAGGCATTTTCTGTGCGGCGCGTTGTTGTGTAATTGT
TCATCGGCGGAGCGTGAAGGTCTATCTACATATCATGCGCAGCGGGAATG
CTCAGCAGAACCCGATGTGCGGCATCCTGTCATTAAGAATTTTCACATAT
CTCCCCGGTTCTCGCCTAAGTGTTTTTATCGCGATTCAAATTCAGAACTC
CTACTAGCACACCTTTGTACAGCAGTAGTAATAGGTTCTATGCGCAGAAT
CGTTTGTTCAAAATTGTTCAAGATGAGAGCGTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig756:328321..330456-

>mRNA_F-serratus_M_contig756.18819.1 ID=mRNA_F-serratus_M_contig756.18819.1|Name=mRNA_F-serratus_M_contig756.18819.1|organism=Fucus serratus male|type=CDS|length=1302bp|location=Sequence derived from alignment at F-serratus_M_contig756:328321..330456- (Fucus serratus male)
ATGCATGTCACGTATATGTTCGTGGCTTATTGGCAAAGTGAAGTTGCACC
GTTCGACGGATGTGAGCGATACTTCAGAATGGTCGCAAACCCTAGGACCG
GTACCATCCCCAAGATGCATGTCACGTATATGTTCGTGGCTTATTGGCAA
AGTGAAGTTGCACCGTTCGACGGATGTGAGCGATACTTCAGAATGGTCGC
AAACCCTAGGACCGGTACCATCCCCAAGGCGGAGCTGCAGCCGTTTATTC
TTGCGATGGTGCGAAGGCACCCCGACCTTAGCTCCATATTCCTGGACGAT
GGATCTCATTACGTGAACAATGTGCTGGCTGTAGCCTTCCACAAGCATAG
GCGGAGCTGCAGCCGTTTATTCTTGCGATGGTGCGAAGGCACCCCGACCT
TAGCTCCATATTCCTGGACGATGGATCTCATTACGTGAACAATGTGCTGG
CTGTAGCCTTCCACAAGCATAGTTGTGGTGTCTTGAGATCGAAAAAACTC
AAGGGAAGCGGATTCGTAACTTTCTTCAACACGGTCGGCCGCCTGGAAGC
ATCCCTTGAGTTGTGGTGTCTTGAGATCGAAAAAACTCAAGGGAAGCGGA
TTCGTAACTTTCTTCAACACGGTCGGCCGCCTGGAAGCATCCCTTGAGGG
GAACAGCCTCGCCACGACCACTTCGACTCGGACGACTGCAGCACTACCAG
GAAATCGGTGTACAGCAATGGAGTCGATTTCCTCTACTCTCCAGGAGCCA
GTAGGCGGTATCGTGGAGTCCGAATGTTTGTTTAAGCTCTCGACGGCTAA
TGCTCGGAGAGCCGCCAAGAAAAAGATGAAAAAGCGGCGCTATAAATTTA
ACAAGAAAGCACGCAGGGCTTTGGCGCGTTTTTACATGATGGTCATGACC
GAGCTAAGGGAATATTTTTCTCGATCAATCGATCCGAAGCGCCAAACGAA
GCGAGCGGAATGTAAGATAGGTTAGGGGAACAGCCTCGCCACGACCACTT
CGACTCGGACGACTGCAGCACTACCAGGAAATCGGTGTACAGCAATGGAG
TCGATTTCCTCTACTCTCCAGGAGCCAGTAGGCGGTATCGTGGAGTCCGA
ATGTTTGTTTAAGCTCTCGACGGCTAATGCTCGGAGAGCCGCCAAGAAAA
AGATGAAAAAGCGGCGCTATAAATTTAACAAGAAAGCACGCAGGGCTTTG
GCGCGTTTTTACATGATGGTCATGACCGAGCTAAGGGAATATTTTTCTCG
ATCAATCGATCCGAAGCGCCAAACGAAGCGAGCGGAATGTAAGATAGGTT
AG
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