mRNA_F-serratus_M_contig754.18807.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig754.18807.1
Unique NamemRNA_F-serratus_M_contig754.18807.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig754.18807.1 vs. uniprot
Match: A0A6H5K5G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G3_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 3.450e-66
Identity = 126/228 (55.26%), Postives = 149/228 (65.35%), Query Frame = 1 
Query:  106 FHDHSALTPPSPDAFTRHNHVGYRRDPAYGPDGAWG--------NGAPRGQTEH----------------------------IQRVDAAPVLVLQPGWGVTLPPYFLGMADPKQPRNLPMKMLWELRAEALSGHPDEVLVEMRQVPGYLDFLAEIMPPDMLKFRWATRCWDTLLGKNESRHLLEKAAGALHNLGLVPLPPDSALRQVYDDLVSHTRNGE-GITSYSVN 678
            FHDH+AL+  +P+  T+   +GYRR PA+GP+G WG         G  RG +                                RVD+ PVLVLQPGWGVTLPPYFLGM DPK+PR++P+KMLWELRAE L G  D VLVEMRQVPGYLDFLAEIMP DMLKFRW+ RCW+TL GKNESR LLE+AA AL +LGLVP+P  S+LR VYDD V+       G+ S S+N
Sbjct:  587 FHDHNALSAAAPEILTQ---MGYRRAPAFGPEGIWGANDAGASVGGGARGHSVAPXXXXXXXPAAMPVAPAGVAPXXAPGGAAARVDSPPVLVLQPGWGVTLPPYFLGMMDPKRPRSVPVKMLWELRAEPLPGAADSVLVEMRQVPGYLDFLAEIMPADMLKFRWSLRCWETLQGKNESRALLEEAAAALSHLGLVPMPLGSSLRLVYDDFVARRAVAAIGVNSGSIN 811
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig754.18807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5G3_9PHAE3.450e-6655.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig754contigF-serratus_M_contig754:122723..124041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size736
Cds size735
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig754.18807.1prot_F-serratus_M_contig754.18807.1Fucus serratus malepolypeptideF-serratus_M_contig754 122723..124041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932274.4008198-CDS-F-serratus_M_contig754:122722..1229831622932274.4008198-CDS-F-serratus_M_contig754:122722..122983Fucus serratus maleCDSF-serratus_M_contig754 122723..122983 -
1690964229.8052597-CDS-F-serratus_M_contig754:122722..1229831690964229.8052597-CDS-F-serratus_M_contig754:122722..122983Fucus serratus maleCDSF-serratus_M_contig754 122723..122983 -
1622932274.417252-CDS-F-serratus_M_contig754:123275..1233891622932274.417252-CDS-F-serratus_M_contig754:123275..123389Fucus serratus maleCDSF-serratus_M_contig754 123276..123389 -
1690964229.818162-CDS-F-serratus_M_contig754:123275..1233891690964229.818162-CDS-F-serratus_M_contig754:123275..123389Fucus serratus maleCDSF-serratus_M_contig754 123276..123389 -
1622932274.435819-CDS-F-serratus_M_contig754:123681..1240411622932274.435819-CDS-F-serratus_M_contig754:123681..124041Fucus serratus maleCDSF-serratus_M_contig754 123682..124041 -
1690964229.8306394-CDS-F-serratus_M_contig754:123681..1240411690964229.8306394-CDS-F-serratus_M_contig754:123681..124041Fucus serratus maleCDSF-serratus_M_contig754 123682..124041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig754.18807.1

>prot_F-serratus_M_contig754.18807.1 ID=prot_F-serratus_M_contig754.18807.1|Name=mRNA_F-serratus_M_contig754.18807.1|organism=Fucus serratus male|type=polypeptide|length=245bp
MSMLPIDNMPPQNGNHRTQMALAPASDPTTFVTAPFHDHSALTPPSPDAF
TRHNHVGYRRDPAYGPDGAWGNGAPRGQTEHIQRVDAAPVLVLQPGWGVT
LPPYFLGMADPKQPRNLPMKMLWELRAEALSGHPDEVLVEMRQVPGYLDF
LAEIMPPDMLKFRWATRCWDTLLGKNESRHLLEKAAGALHNLGLVPLPPD
SALRQVYDDLVSHTRNGEGITSYSVNRGGKTSHSTLEITRSRPAS
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mRNA from alignment at F-serratus_M_contig754:122723..124041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig754.18807.1 ID=mRNA_F-serratus_M_contig754.18807.1|Name=mRNA_F-serratus_M_contig754.18807.1|organism=Fucus serratus male|type=mRNA|length=1319bp|location=Sequence derived from alignment at F-serratus_M_contig754:122723..124041- (Fucus serratus male)
ATGTCGATGCTCCCCATAGATAACATGCCGCCGCAGAACGGGAACCACCG
GACGCAGATGGCACTTGCGCCAGCATCGGACCCAACCACGTTTGTTACGG
CGCCATTCCACGACCACAGCGCGCTTACCCCGCCCTCCCCAGACGCGTTT
ACTCGGCACAACCACGTGGGATATCGACGAGACCCGGCGTACGGGCCTGA
TGGGGCTTGGGGCAACGGAGCGCCTCGGGGGCAAACGGAACACATTCAGC
GTGTGGACGCGGCACCGGTCTTGGTTCTGCAACCAGGCTGGGGTGTTACA
CTTCCGCCTTACTTCTTGGGTATGGCGGATCCCAAGCAGCCGCGGAATCT
TCCTATGAAGGTAAGCCGCTTGTGGAACTGGAGATGCTTTGGAGAAAAGG
CCAGTCTCGCAAAGAACCATTCGCCTCTCGCGTGTCCGGAGCGTTATCAC
GTCGAGGCTTACGGTGTTAAGAGCTATGTCACCTCTCGTGGACTTAACCG
AAAACGCCCCCCCCCCCCCCGAAGGATACTGGATTCTGCCATCAGTTGCT
ACTGCCCGCGTTCTTATGACATAAGCGTGGGATGCACATGGTAAAACTTT
CAAACGTCGCGGTGATCAACCAAGCATCTGTGTCCTACCCTGTTACCAAC
AGATGCTGTGGGAACTCCGAGCGGAGGCATTATCGGGCCACCCTGATGAG
GTTCTAGTGGAGATGCGGCAGGTGCCGGGGTACCTTGACTTCCTAGCGGA
GATCATGCCACCAGATGTGAGACAAAACGTATTGTACCCATCCCCAAAAA
TGAAACGAAGGTTTTGAGGTAAATACCGTCGCTGTAGCGGGATCGCCTCA
ACAGGTTCTGATTCAATTAGTTCCGCTTCCTAAGCAAGCAAGATGCTTAC
TACTCAACATCCGTTTTCGTCGGCCCTGATGGAATCAAAATAAAAGAAGA
TCTCAAGGTACCTTTGCGTGCAGTTGCGACGTCTCCATGAGCTCGTCTGT
TATCTTGAACGGTATCGCCGGACTTTCTGTGCTTGCATACGTGCTGTACT
GGGTTCAGATGCTCAAATTCCGCTGGGCGACGCGGTGTTGGGATACTCTT
TTGGGCAAGAATGAATCTCGACACCTCCTCGAAAAAGCAGCTGGAGCACT
GCACAACTTAGGGCTCGTGCCCCTACCGCCAGACTCGGCGCTACGTCAGG
TCTATGATGACTTAGTTTCCCACACCAGGAACGGCGAGGGCATTACATCG
TACTCGGTGAATAGGGGAGGTAAAACCTCTCATAGCACCCTCGAAATCAC
CCGTTCCCGCCCAGCCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig754:122723..124041-

>mRNA_F-serratus_M_contig754.18807.1 ID=mRNA_F-serratus_M_contig754.18807.1|Name=mRNA_F-serratus_M_contig754.18807.1|organism=Fucus serratus male|type=CDS|length=1470bp|location=Sequence derived from alignment at F-serratus_M_contig754:122723..124041- (Fucus serratus male)
ATGTCGATGCTCCCCATAGATAACATGCCGCCGCAGAACGGGAACCACCG
GACGCAGATGGCACTTGCGCCAGCATCGGACCCAACCACGTTTGTTACGG
CGCCATTCCACGACCACAGCGCGCTTACCCCGCCCTCCCCAGACGCGTTT
ACTCGGCACAACCACGTGGGATATCGACGAGACCCGGCGTACGGGCCTGA
TGGGGCTTGGGGCAACGGAGCGCCTCGGGGGCAAACGGAACACATTCAGC
GTGTGGACGCGGCACCGGTCTTGGTTCTGCAACCAGGCTGGGGTGTTACA
CTTCCGCCTTACTTCTTGGGTATGGCGGATCCCAAGCAGCCGCGGAATCT
TCCTATGAAGATGTCGATGCTCCCCATAGATAACATGCCGCCGCAGAACG
GGAACCACCGGACGCAGATGGCACTTGCGCCAGCATCGGACCCAACCACG
TTTGTTACGGCGCCATTCCACGACCACAGCGCGCTTACCCCGCCCTCCCC
AGACGCGTTTACTCGGCACAACCACGTGGGATATCGACGAGACCCGGCGT
ACGGGCCTGATGGGGCTTGGGGCAACGGAGCGCCTCGGGGGCAAACGGAA
CACATTCAGCGTGTGGACGCGGCACCGGTCTTGGTTCTGCAACCAGGCTG
GGGTGTTACACTTCCGCCTTACTTCTTGGGTATGGCGGATCCCAAGCAGC
CGCGGAATCTTCCTATGAAGATGCTGTGGGAACTCCGAGCGGAGGCATTA
TCGGGCCACCCTGATGAGGTTCTAGTGGAGATGCGGCAGGTGCCGGGGTA
CCTTGACTTCCTAGCGGAGATCATGCCACCAGATATGCTGTGGGAACTCC
GAGCGGAGGCATTATCGGGCCACCCTGATGAGGTTCTAGTGGAGATGCGG
CAGGTGCCGGGGTACCTTGACTTCCTAGCGGAGATCATGCCACCAGATAT
GCTCAAATTCCGCTGGGCGACGCGGTGTTGGGATACTCTTTTGGGCAAGA
ATGAATCTCGACACCTCCTCGAAAAAGCAGCTGGAGCACTGCACAACTTA
GGGCTCGTGCCCCTACCGCCAGACTCGGCGCTACGTCAGGTCTATGATGA
CTTAGTTTCCCACACCAGGAACGGCGAGGGCATTACATCGTACTCGGTGA
ATAGGGGAGGTAAAACCTCTCATAGCACCCTCGAAATCACCCGTTCCCGC
CCAGCCAGCATGCTCAAATTCCGCTGGGCGACGCGGTGTTGGGATACTCT
TTTGGGCAAGAATGAATCTCGACACCTCCTCGAAAAAGCAGCTGGAGCAC
TGCACAACTTAGGGCTCGTGCCCCTACCGCCAGACTCGGCGCTACGTCAG
GTCTATGATGACTTAGTTTCCCACACCAGGAACGGCGAGGGCATTACATC
GTACTCGGTGAATAGGGGAGGTAAAACCTCTCATAGCACCCTCGAAATCA
CCCGTTCCCGCCCAGCCAGC
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