mRNA_F-serratus_M_contig753.18799.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig753.18799.1
Unique NamemRNA_F-serratus_M_contig753.18799.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.250e-50
Identity = 79/101 (78.22%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPAGVA 672
            ++VEE LERI+VQPGVEGYVICDM+GQVLRR PTMSQETAE+YA +M HLA KARGV RDLNPK E+ Y+RIRAKRHEV+VAFD++FLAI+IQRWQPAG +
Sbjct:    2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAGTS 102
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 6.420e-45
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRD 627
            SEVEE LERI+VQPGVEGYVICDMEGQVLRR PTMSQETAE+YAEAMRHLA+KARGV RD+NPKGE+KYMRIRAKRHEVLVAF  +
Sbjct:    2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.300e-43
Identity = 70/99 (70.71%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPAG 666
            SEVEE LER++VQ GVEGYVIC+ +G VLRR P MSQE AE YA++MRHLA KARGV RDLNP+ E++Y+RIRAKRHEV++AFD +FL I+IQ+W PAG
Sbjct:    2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPAG 100
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.380e-43
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPAG 666
            SEVEE LER++VQPGVEGYVIC+ +GQVLRR P+M Q+ AELYA++MR LA KARGV RDLNP+ E++Y+RIRA+R EV+VA+D +FL I+IQRWQPA 
Sbjct:    2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPAA 100
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN)

HSP 1 Score: 146 bits (369), Expect = 7.350e-42
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPAG 666
            SEVEE LER+++Q GVEGYVIC  +GQVLRRLP+M+Q  AE+YA+ M  L+ KARGV RDLNPK E++Y+R+RAKRHEVLVAFD++FL I+IQRW PA 
Sbjct:    2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.350e-37
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPAG 666
            SEVEE +ERI+VQ GVEGYVIC+ +GQVLRR PTMS E AE YA  M  L  +ARGV RDL+PK E+ Y+R+RAKRHE++VA+D  F+ I+IQRW PA 
Sbjct:    2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPAA 100
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI)

HSP 1 Score: 127 bits (318), Expect = 2.160e-34
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAF 618
            SEVEE +ERI+VQPGVEGYVIC+ +GQVLRR PTM+QETAE Y+EAM  L+ +AR V RDLNPK E+KY+R+RAKRHE++VAF
Sbjct:    1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.450e-32
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:  352 VIFVAKSEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPA 663
            ++ +  SEVE  +ERI+   GVEGYVIC+  GQVLRR PTMS + A+ YA  M  L  +ARGV RDL+PK ++KY+R+R+K+HE++VAFD  F+ II+QRW  A
Sbjct:    2 ILSIKMSEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQFVVIILQRWSAA 105
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.860e-32
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPAGVA 672
            S+VEE LERI+++PGV GYVIC+ +G VLRR P+M+ E A+ YA AM+ LA KA GV RD+NP   ++Y+RIR KR EV+VA D  FL I+IQRW PA  A
Sbjct:    2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPAEQA 102
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BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.980e-32
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:  370 SEVEENLERIRVQPGVEGYVICDMEGQVLRRLPTMSQE--TAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIIIQRWQPA 663
            SEVEE LERI+ + GVEGYVIC+  G VLRR P   ++   A +YAE+MR LA KAR V RDL+P+ E++Y+RIRAK HEV+VAFD +FL ++IQ+W+PA
Sbjct:    7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig753.18799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIL5_9STRA1.250e-5078.22Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
D7FWL6_ECTSI6.420e-4587.21Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6T7GUX9_9STRA3.300e-4370.71Dynein light chain roadblock n=1 Tax=Florenciella ... [more]
A0A6U1LT09_9STRA9.380e-4369.70Dynein light chain roadblock n=1 Tax=Fibrocapsa ja... [more]
F0Y2Y8_AURAN7.350e-4268.69Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A7S3H6W3_9STRA1.350e-3764.65Dynein light chain roadblock n=1 Tax=Spumella elon... [more]
A0A812SWU6_SYMMI2.160e-3472.29DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A7S0SZ17_9STRA2.450e-3254.81Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S1XSI3_9STRA4.860e-3259.41Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2F8W6_9STRA5.980e-3260.00Dynein light chain roadblock n=1 Tax=Dictyocha spe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig753contigF-serratus_M_contig753:231654..233324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue7.1e-23
Seed eggNOG ortholog2880.D7FWL6
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0045505,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-11_002380.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons3
Model size675
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig753.18799.1prot_F-serratus_M_contig753.18799.1Fucus serratus malepolypeptideF-serratus_M_contig753 232092..233324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932272.9320881-UTR-F-serratus_M_contig753:231653..2320911622932272.9320881-UTR-F-serratus_M_contig753:231653..232091Fucus serratus maleUTRF-serratus_M_contig753 231654..232091 +
1690964229.1876168-UTR-F-serratus_M_contig753:231653..2320911690964229.1876168-UTR-F-serratus_M_contig753:231653..232091Fucus serratus maleUTRF-serratus_M_contig753 231654..232091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932272.9528952-CDS-F-serratus_M_contig753:232091..2321031622932272.9528952-CDS-F-serratus_M_contig753:232091..232103Fucus serratus maleCDSF-serratus_M_contig753 232092..232103 +
1690964229.198454-CDS-F-serratus_M_contig753:232091..2321031690964229.198454-CDS-F-serratus_M_contig753:232091..232103Fucus serratus maleCDSF-serratus_M_contig753 232092..232103 +
1622932272.969251-CDS-F-serratus_M_contig753:232550..2327191622932272.969251-CDS-F-serratus_M_contig753:232550..232719Fucus serratus maleCDSF-serratus_M_contig753 232551..232719 +
1690964229.2065895-CDS-F-serratus_M_contig753:232550..2327191690964229.2065895-CDS-F-serratus_M_contig753:232550..232719Fucus serratus maleCDSF-serratus_M_contig753 232551..232719 +
1622932272.9894156-CDS-F-serratus_M_contig753:233268..2333241622932272.9894156-CDS-F-serratus_M_contig753:233268..233324Fucus serratus maleCDSF-serratus_M_contig753 233269..233324 +
1690964229.2144923-CDS-F-serratus_M_contig753:233268..2333241690964229.2144923-CDS-F-serratus_M_contig753:233268..233324Fucus serratus maleCDSF-serratus_M_contig753 233269..233324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig753.18799.1

>prot_F-serratus_M_contig753.18799.1 ID=prot_F-serratus_M_contig753.18799.1|Name=mRNA_F-serratus_M_contig753.18799.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MEGQVLRRLPTMSQETAELYAEAMRHLAVKARGVARDLNPKGEMKYMRIR
AKRHEVLVAFDRDFLAIIIQRWQPAGVA*
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mRNA from alignment at F-serratus_M_contig753:231654..233324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig753.18799.1 ID=mRNA_F-serratus_M_contig753.18799.1|Name=mRNA_F-serratus_M_contig753.18799.1|organism=Fucus serratus male|type=mRNA|length=1671bp|location=Sequence derived from alignment at F-serratus_M_contig753:231654..233324+ (Fucus serratus male)
GTATAACCGTTGTTACAAGCTCGCTAGCGTCGAAAGCTTCCGAGTTCTGT
AGTAGTGGTTCGTGAGTGCTCCCATTGATGATATACATCGTATAAACAGA
AAAAAAGGGCAGCACAAGTACTATTAATACTATATAAATATAGTaCAGGC
AGTACAAAAATAATGGCTAGACATAAAAACACACTGTAGCGTCCCTCTTC
TATCTTTGCAATAAATACCGGGTGTGTACTACTGTACCGTGAGGTACCGC
GTCAGTTTCCTCTTCACTTCGCACACAAGTAATATTTTTGTCGGCTTGGC
GATGGATTTTCTCGCTCACGCCCGACCCTTCATTCTCCTCTTTTGTTATA
CGTGATTTTCGTGGCCAAGTCGGAGGTAGAGGAGAATCTCGAGCGAATCA
GAGTGCAGCCCGGTGTGGAGGGGTATGTTATCTGCGACATGGAAGGACAG
GTGAAAGAACTAGCGATATATATATATATATATATATATTATATACTGCA
GGCTCAAAGCTCTTCGCCATGGGATTCTCCTTGCTCGAATCTCGTGACTT
CATCCTGAAGCTCCGAGTGCTTTTCTCCATACTAATATTATTATCTGGGG
TGGGACGCACTGTGCAGCGCGATCGCGGTCACGTGGGCCTCGTAATATAA
TTCCCTCCTCCAAATGCGCCAAGGCCGACCGCGGTGTTACCCTGTGCTGT
ATCGTAGTCTAGAACAAGTTTTACAGTTTTACGAGGCAATAGCAACACTC
AGCAGTCGTCGTTGTAGCAACTAAGCTTAAAAAGGTTGCGTCCTCCACGA
ACGTGGGAAGTTCCAAGGGCAAGCTCTCGTAATTAGCTTGAATCCCTTAA
ATGCGCCCGTCGGAAACCGCGTCGAGTCTTTTGTTCGTCCCACGCAGGTG
TTGAGAAGATTGCCGACGATGTCGCAAGAGACTGCCGAACTGTACGCGGA
GGCCATGCGACACCTAGCGGTCAAGGCCCGCGGAGTGGCGAGAGATCTCA
ACCCCAAGGGCGAGATGAAGTACATGCGCATCCGCGCAAAGCGGCACGAG
GTTCTCGTGGCATTCGGTGAGCATAGGACGCGCCAGCCGGCGGTTTCACG
AGCGAGATAAATATCACCAAGAAAATAAAAAGCAAGTAAACCTTTGGCGA
GGCAGGGCTCTTCTTCGCGCGAACAAAGATGTACGTGGGAATTTTTCTGA
GCGAAGCATGACGCCAAACGCAGGGAGGGTGTAGTAGTCGTAGAAGAGGT
TTTCTCCGCTGTTCCGGCTTGCTGCACACTGCTGTACCAGACAATATGTA
TTTGGAGGGCTCGCGGTGAAAACTCACACTCGAATCGTACTCGTGCTTTG
GCCTTGTACGGTCGCTTAGCCTTGTTCTGCTGCGTTGTTGGTGATGGTAA
CCGTCGCGGGGAGGGGTTTTACCTCGGAATCGAAGCAAGCGCACGTTTTT
GCTGCCAATGAGCAAGCTTTGAAATATAGACTCTAGCGTACCAATCTTCT
CAAACCCAGCTCCGACTTGGTATGGCTCCCTCTCTTGCCTGCGCCCGCCG
TGCGTTCGCCCCCCCAATCGTGCTCGTGCCTACCATCCTGTCGTCGTCGT
CGTCGGCATCGTCAGACCGCGATTTTCTCGCCATAATCATCCAGCGTTGG
CAACCTGCTGGGGTGGCATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig753:231654..233324+

>mRNA_F-serratus_M_contig753.18799.1 ID=mRNA_F-serratus_M_contig753.18799.1|Name=mRNA_F-serratus_M_contig753.18799.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig753:231654..233324+ (Fucus serratus male)
ATGGAAGGACAGATGGAAGGACAGGTGTTGAGAAGATTGCCGACGATGTC
GCAAGAGACTGCCGAACTGTACGCGGAGGCCATGCGACACCTAGCGGTCA
AGGCCCGCGGAGTGGCGAGAGATCTCAACCCCAAGGGCGAGATGAAGTAC
ATGCGCATCCGCGCAAAGCGGCACGAGGTTCTCGTGGCATTCGGTGTTGA
GAAGATTGCCGACGATGTCGCAAGAGACTGCCGAACTGTACGCGGAGGCC
ATGCGACACCTAGCGGTCAAGGCCCGCGGAGTGGCGAGAGATCTCAACCC
CAAGGGCGAGATGAAGTACATGCGCATCCGCGCAAAGCGGCACGAGGTTC
TCGTGGCATTCGACCGCGATTTTCTCGCCATAATCATCCAGCGTTGGCAA
CCTGCTGGGGTGGCATGAACCGCGATTTTCTCGCCATAATCATCCAGCGT
TGGCAACCTGCTGGGGTGGCATGA
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