mRNA_F-serratus_M_contig753.18796.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig753.18796.1
Unique NamemRNA_F-serratus_M_contig753.18796.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig753.18796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig753contigF-serratus_M_contig753:117550..117928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size379
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932271.491815-CDS-F-serratus_M_contig753:117549..1178911622932271.491815-CDS-F-serratus_M_contig753:117549..117891Fucus serratus maleCDSF-serratus_M_contig753 117550..117891 +
1690964228.4296236-CDS-F-serratus_M_contig753:117549..1178911690964228.4296236-CDS-F-serratus_M_contig753:117549..117891Fucus serratus maleCDSF-serratus_M_contig753 117550..117891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932271.5118206-UTR-F-serratus_M_contig753:117891..1179281622932271.5118206-UTR-F-serratus_M_contig753:117891..117928Fucus serratus maleUTRF-serratus_M_contig753 117892..117928 +
1690964228.4461832-UTR-F-serratus_M_contig753:117891..1179281690964228.4461832-UTR-F-serratus_M_contig753:117891..117928Fucus serratus maleUTRF-serratus_M_contig753 117892..117928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig753.18796.1prot_F-serratus_M_contig753.18796.1Fucus serratus malepolypeptideF-serratus_M_contig753 117550..117891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig753.18796.1

>prot_F-serratus_M_contig753.18796.1 ID=prot_F-serratus_M_contig753.18796.1|Name=mRNA_F-serratus_M_contig753.18796.1|organism=Fucus serratus male|type=polypeptide|length=114bp
LHCLARSDVLHKVATRYHALWCKSRPRPLLLNHTPHVHSIFLHLGWAELP
NVFPHTRCVLDCAASTCLSHRGLDGITSRRFLGWCYYYKRGSRAAARIVR
NFHAPLVRWVFSV*
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mRNA from alignment at F-serratus_M_contig753:117550..117928+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig753.18796.1 ID=mRNA_F-serratus_M_contig753.18796.1|Name=mRNA_F-serratus_M_contig753.18796.1|organism=Fucus serratus male|type=mRNA|length=379bp|location=Sequence derived from alignment at F-serratus_M_contig753:117550..117928+ (Fucus serratus male)
CTGCATTGCCTTGCTCGCTCGGACGTACTTCATAAGGTGGCCACACGTTA
TCACGCGCTCTGGTGCAAGTCCCGACCTCGGCCACTTCTTCTTAACCACA
CACCTCACGTTCATTCCATCTTCCTTCACCTCGGCTGGGCTGAGCTCCCG
AACGTATTTCCACACACCCGATGTGTTCTTGACTGCGCGGCCAGCACATG
CCTCTCCCACCGCGGGTTGGATGGGATCACCAGCAGGCGGTTCTTGGGGT
GGTGCTACTACTACAAGCGAGGAAGCAGAGCCGCCGCCCGCATCGTCCGC
AACTTCCATGCGCCTTTAGTGCGTTGGGTATTCAGTGTGTGAGCGGCTTT
GGCTGATGTGGCTGGGGCGTGTGTGTGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig753:117550..117928+

>mRNA_F-serratus_M_contig753.18796.1 ID=mRNA_F-serratus_M_contig753.18796.1|Name=mRNA_F-serratus_M_contig753.18796.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig753:117550..117928+ (Fucus serratus male)
CTGCATTGCCTTGCTCGCTCGGACGTACTTCATAAGGTGGCCACACGTTA
TCACGCGCTCTGGTGCAAGTCCCGACCTCGGCCACTTCTTCTTAACCACA
CACCTCACGTTCATTCCATCTTCCTTCACCTCGGCTGGGCTGAGCTCCCG
AACGTATTTCCACACACCCGATGTGTTCTTGACTGCGCGGCCAGCACATG
CCTCTCCCACCGCGGGTTGGATGGGATCACCAGCAGGCGGTTCTTGGGGT
GGTGCTACTACTACAAGCGAGGAAGCAGAGCCGCCGCCCGCATCGTCCGC
AACTTCCATGCGCCTTTAGTGCGTTGGGTATTCAGTGTGTGACTGCATTG
CCTTGCTCGCTCGGACGTACTTCATAAGGTGGCCACACGTTATCACGCGC
TCTGGTGCAAGTCCCGACCTCGGCCACTTCTTCTTAACCACACACCTCAC
GTTCATTCCATCTTCCTTCACCTCGGCTGGGCTGAGCTCCCGAACGTATT
TCCACACACCCGATGTGTTCTTGACTGCGCGGCCAGCACATGCCTCTCCC
ACCGCGGGTTGGATGGGATCACCAGCAGGCGGTTCTTGGGGTGGTGCTAC
TACTACAAGCGAGGAAGCAGAGCCGCCGCCCGCATCGTCCGCAACTTCCA
TGCGCCTTTAGTGCGTTGGGTATTCAGTGTGTGA
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