mRNA_F-serratus_M_contig752.18789.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig752.18789.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE) HSP 1 Score: 434 bits (1115), Expect = 2.930e-120 Identity = 390/812 (48.03%), Postives = 454/812 (55.91%), Query Frame = 1
Query: 4423 STTRNMAEAEDRARDFSEEATRLRGQLENRSTRLEELQEAFRSEAQSAARIPTLEGDLEAERVGRRELEGEVRALREDVRATEKIKEAFARENEEIMSAMQGQVDSANKERDAAQAGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKVVGLEEKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVAENEEAAEGGKTAKEDLETKVKRLKILLSKLQKSNQSKDADIAALKTP-PPPTVFTVDLRVRYRGSVWCLLTTNPSGAEGTRLTATAGPEEGGAADRDGLTAEGLLKHK----QWVNEDKLRAWMAGGTSRSDDSLWPTVVQDDLEKKAAAAKEEARAAEARAASKQAELETLSSDFAKYKARAHTALKKATSSGADDKRKIEVIAELESDRDRL---IEELGQTRAEFEKQIAEATSAAKLTQDDLQTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELKSQLKVARAQATESSCITQRLQDELERVAKEREASDGR---RGSWDPRSDGGWAGQQMLD--------SRRGMGTEPSRGF---PNQLRLSEDAIPPRTPDSVAAISATASDVGVDDLIGEASNSFPAVAAQPVHLMAFAELERRNISVESKKQAEVSEMRTELAEALLRVEQLSDQEAVLKATIRALEVELKTERDLGSSESGSVNVAYLKSAVVRYMSTRDTGEQRSLLRVISTILQLTRLEVEAVEARIAELERTMMGRAGNMVGGAXXXXXXVVGGVVGFVWRGGGKAEPGMEAGAAEEGENGRDEG 6792
+ T + EAED R SEE+ LR LE R RLEE SAAR P LE DL AER GRREL M A+QGQVD+AN XXXXXXX XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX V E E+ A K+AKEDLE KVKRLK LLSKLQKS+ SKDAD+AALK P PPP FTV LRVR+ GS WC + + T+ AT+ E+GG +D AE K QWV EDK R W+AGG+S SD +LWP VVQ+ E++A AA EAR A A + + ELE LS++FAKYKARAHTALKKATS+GA+DKRK E+IA L+S+ RL +E DELKSQLK A+AQA ESSCI QRLQ+ELE V K R D R GSWD R+DGGWAGQQ+L +R EP+ + LSE +PP + + + ++ A QPV LMA AELERR+ S+E QAEV+EMR ELAEALLRVEQLS QE++LK+TIRALE +L TER+LGS E+ +NVAYLKSAVVRYMSTRD GEQRSLLRVISTILQ T+ EV VEARI ELE+TM+ RAG+MVGGA XXXXXVVGGVVG VW GGG+A + + E+G +EG
Sbjct: 959 NATCRLREAEDLLRSTSEESMVLRRGLEERCQRLEE----------SAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGALQGQVDAANXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREDEFAKMVGEKEQVAAAEKSAKEDLEVKVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFV-------KATQQPATS--EDGG---KDTAPAEASAAPKPDKQQWVTEDKARTWLAGGSSSSDVALWPKVVQEAFEERAVAAAAEARVAAEGALATRQELEALSTEFAKYKARAHTALKKATSNGAEDKRKDELIAALQSEVARLTKRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAELETAQEQVRGLQGSLRDQERKLAQLQEAEEGHSEEMSALREARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNGNGSWDARADGGWAGQQLLXXXXXXXXXARLQATDEPAAALGVSKGGVPLSEGGVPPLPAAGLGGMPSASASPXXXXXXXXXXXFAEGGAGQPVQLMAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVW-GGGRAAAADDGDGVDVTEDGGEEG 1747
BLAST of mRNA_F-serratus_M_contig752.18789.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI) HSP 1 Score: 192 bits (487), Expect = 3.400e-52 Identity = 122/174 (70.11%), Postives = 139/174 (79.89%), Query Frame = 1
Query: 6268 MAFAELERRNISVESKKQAEVSEMRTELAEALLRVEQLSDQEAVLKATIRALEVELKTERDLGSSESGSVNVAYLKSAVVRYMSTRDTGEQRSLLRVISTILQLTRLEVEAVEARIAELERTMMGRAGNMVGGAXXXXXXVVGGVVGFVWRGGGKAEPGMEAGAAEEGENGRDE 6789
MA AELERR+ SVE QAEV+EMR ELAEALLRVEQLS QE++LK+TIRALE +L TER+LGS E+ +NVAYLKSAVVRYMSTRD GEQRSLLRVISTILQ T+ EV VEARI ELE+TM+ RAG+MVGG XXXXXXVV VVG VW GGG+A P + E+G +E
Sbjct: 1 MAVAELERRHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGXXXXXXXVVXXVVGLVW-GGGRAAPADGGDGVDVTEDGGEE 173
BLAST of mRNA_F-serratus_M_contig752.18789.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 7.470e-12 Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 5089 VKRLKILLSKLQKSNQSKDADIAALKTP-PPPTVFTVDLRVRYRGSVWCLL 5238
VKRLK LLSKLQKS+ SKDAD+AALK P PPP FTV LRVR+ GS WC +
Sbjct: 2 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFV 52
BLAST of mRNA_F-serratus_M_contig752.18789.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.680e-6 Identity = 168/538 (31.23%), Postives = 229/538 (42.57%), Query Frame = 1
Query: 34 GLEAELDTLRSEVDGERTRVACVKEELDEAVKAKEEAEANR-AATEESGRGAGAVRQELEAECGALSARLSEAEGAKSKXXXXXXXXXXXXXXXXXXXXXXXXXXENATAAFEARDSEGSARNGERDGETVQAASERAAESEEPA--DGERSSEE-------------VALLARCQELEQEAAAATQKIALLEKAVTE-GAAGQAAAGEGEERELDSQLKAPTPEPEEAGKASSSPPRTG-----------------DEESQA---LLEDRLRIAEAEVKES-KQTAAEMEGIIAGLRKEEAALEERLLQLTTDVSAAKXXXXVAQEELETATEEN----RKLSERASGTEALVQEL-----QKKRDVATKATGDAEEVFRGEKSNLEARVLELTDEVSASKKAASIAQEGLEAAREEAQRLNERASAAEALLQELQENREAATRTANDAEEVLRKEKVVLEARLEEAAQEVDRSRKALLESASAAMAATEAIQAEKAKAEEESSSLRKQVAAQKEKISKAVTHMRSLKADKEAATEE 1506
GL+ EL+ R+E++GER RVAC+ +EL +A K KEEAEA AA+++ + A+R E +A LSARL+ AE XXXXXXXXXXXXXXXX E+E P+ DGER E AL ARC+ELE AA A++KIA LE V + A + AG+ +EES A LL+ RLR EVKE+ K+ A E EG++AGLR+E+AAL R+L+LT +V+AA+ +QE LE E+ R+L+ERA E +E +++RD+ + EA EK LE RLEEAA+E R R+ L + S + A+ E AKAE E ++L +QVA QK+K+ KA +RSLK +++AATE+
Sbjct: 351 GLKGELEASRAELEGERERVACLGQELRQAFKDKEEAEARADAASQDLATSSAALRAERDA----LSARLATAEXXXXXXXXXXXXXXXXXXXXX--------------------------------------------ETEAPSVGDGERPEEXXXXXXXXXXXXXIAALRARCEELEIGAAVASEKIAALEARVRDVDAVSSSTAGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESVAQLELLKKRLR----EVKEAAKEPAREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQECLEREREDGLRQARQLTERAEAAEQAAEEAAAAGQERERDLEEQRXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXAAEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKASLEGRLEEAAEETSRLRQELTAAISGSTASQEGAAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEK 836 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig752.18789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig752.18789.1 >prot_F-serratus_M_contig752.18789.1 ID=prot_F-serratus_M_contig752.18789.1|Name=mRNA_F-serratus_M_contig752.18789.1|organism=Fucus serratus male|type=polypeptide|length=795bp MASTTRNMAEAEDRARDFSEEATRLRGQLENRSTRLEELQEAFRSEAQSAback to top mRNA from alignment at F-serratus_M_contig752:277854..302139+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig752.18789.1 ID=mRNA_F-serratus_M_contig752.18789.1|Name=mRNA_F-serratus_M_contig752.18789.1|organism=Fucus serratus male|type=mRNA|length=24286bp|location=Sequence derived from alignment at F-serratus_M_contig752:277854..302139+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig752:277854..302139+ >mRNA_F-serratus_M_contig752.18789.1 ID=mRNA_F-serratus_M_contig752.18789.1|Name=mRNA_F-serratus_M_contig752.18789.1|organism=Fucus serratus male|type=CDS|length=4770bp|location=Sequence derived from alignment at F-serratus_M_contig752:277854..302139+ (Fucus serratus male)back to top |