mRNA_F-serratus_M_contig750.18784.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig750.18784.1
Unique NamemRNA_F-serratus_M_contig750.18784.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig750.18784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig750contigF-serratus_M_contig750:185589..186504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932269.343455-CDS-F-serratus_M_contig750:185588..1856671622932269.343455-CDS-F-serratus_M_contig750:185588..185667Fucus serratus maleCDSF-serratus_M_contig750 185589..185667 +
1690964227.3841767-CDS-F-serratus_M_contig750:185588..1856671690964227.3841767-CDS-F-serratus_M_contig750:185588..185667Fucus serratus maleCDSF-serratus_M_contig750 185589..185667 +
1622932269.3678036-CDS-F-serratus_M_contig750:186303..1865031622932269.3678036-CDS-F-serratus_M_contig750:186303..186503Fucus serratus maleCDSF-serratus_M_contig750 186304..186503 +
1690964227.3935754-CDS-F-serratus_M_contig750:186303..1865031690964227.3935754-CDS-F-serratus_M_contig750:186303..186503Fucus serratus maleCDSF-serratus_M_contig750 186304..186503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig750.18784.1prot_F-serratus_M_contig750.18784.1Fucus serratus malepolypeptideF-serratus_M_contig750 185589..186503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig750.18784.1

>prot_F-serratus_M_contig750.18784.1 ID=prot_F-serratus_M_contig750.18784.1|Name=mRNA_F-serratus_M_contig750.18784.1|organism=Fucus serratus male|type=polypeptide|length=93bp
KEGDKSPWVWPESFIEFIVHLPLHLQGDHTFCSSDCAGAEKHIIVEEDCE
GGILPSANAAGRVADFFAETMGLKQGESIDEELYMTDATNESV
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mRNA from alignment at F-serratus_M_contig750:185589..186504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig750.18784.1 ID=mRNA_F-serratus_M_contig750.18784.1|Name=mRNA_F-serratus_M_contig750.18784.1|organism=Fucus serratus male|type=mRNA|length=916bp|location=Sequence derived from alignment at F-serratus_M_contig750:185589..186504+ (Fucus serratus male)
AAGGAGGGAGATAAATCGCCATGGGTTTGGCCCGAGTCTTTCATCGAATT
TATCGTTCACCTCCCATTGCATCTACAAGGTAAAAACGATACTTTTTCAT
TATGCGTTTCGCTTTTTTCCTTGTCGCGTGCAAAAGTAGCCAAGCGCACA
AAAACAAATAGCTCACAAATGGATGAATGGTGTGGTTGCCTCCCTGTGCA
CACGTTATCACCACGGTTCCTGGTCGTTGGGTGTTACTATAGTCAGACTT
GTTTGGAACCGTGAGCGTTCTATAGTTGTGTGCGTGCACACGTACGCCTA
CACTATATGAGTGGTTCATCCAATGGGGGGACGGGGATGTCGAAAATGTT
TACTCGTTTTGGTAGGGAACGGCGCGATAAATAGACCCGGCTACATATAT
GCCCAACTCCTTGCGGAAATGAATTGTATTCGGGGCAAGCTTGCCGACCA
TGAATACCTGGAAGGTGGGACGTCTTGGTGACCACCCCGGGGACGGAATC
GACGTACCCCCGCCCCCTCAATCGTTGAACGAATCATATACAGTACTCTG
GGGGCCGGGCGCATGGGAACTGAGTTTTTTGGGTCGACGATTTCAGGCCG
TCAAAATGCCCCATATCACGTGCTCCGTATCATTGGGCAACTGTAAAGTG
AGAGTCTGTAATACCTTGCAAAACGTACACCGCCTGCCCCTTTTCTTGCG
CGATCTCCCTGACAGGAGACCACACGTTCTGCTCTTCCGATTGTGCAGGT
GCTGAAAAGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGCC
GTCCGCCAACGCTGCCGGAAGGGTCGCCGACTTTTTTGCCGAGACGATGG
GGCTCAAGCAGGGCGAGAGCATCGATGAGGAGCTTTACATGACAGATGCG
ACTAACGAGTCGGTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig750:185589..186504+

>mRNA_F-serratus_M_contig750.18784.1 ID=mRNA_F-serratus_M_contig750.18784.1|Name=mRNA_F-serratus_M_contig750.18784.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig750:185589..186504+ (Fucus serratus male)
AAGGAGGGAGATAAATCGCCATGGGTTTGGCCCGAGTCTTTCATCGAATT
TATCGTTCACCTCCCATTGCATCTACAAGAAGGAGGGAGATAAATCGCCA
TGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATTGCA
TCTACAAGGAGACCACACGTTCTGCTCTTCCGATTGTGCAGGTGCTGAAA
AGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGCCGTCCGCC
AACGCTGCCGGAAGGGTCGCCGACTTTTTTGCCGAGACGATGGGGCTCAA
GCAGGGCGAGAGCATCGATGAGGAGCTTTACATGACAGATGCGACTAACG
AGTCGGTCGAGACCACACGTTCTGCTCTTCCGATTGTGCAGGTGCTGAAA
AGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGCCGTCCGCC
AACGCTGCCGGAAGGGTCGCCGACTTTTTTGCCGAGACGATGGGGCTCAA
GCAGGGCGAGAGCATCGATGAGGAGCTTTACATGACAGATGCGACTAACG
AGTCGGTC
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