mRNA_F-serratus_M_contig75.18782.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18782.1
Unique NamemRNA_F-serratus_M_contig75.18782.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:937281..940283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1487
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18782.1prot_F-serratus_M_contig75.18782.1Fucus serratus malepolypeptideF-serratus_M_contig75 937814..940181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932258.0773075-UTR-F-serratus_M_contig75:937280..9378131622932258.0773075-UTR-F-serratus_M_contig75:937280..937813Fucus serratus maleUTRF-serratus_M_contig75 937281..937813 -
1690964222.0632577-UTR-F-serratus_M_contig75:937280..9378131690964222.0632577-UTR-F-serratus_M_contig75:937280..937813Fucus serratus maleUTRF-serratus_M_contig75 937281..937813 -
1622932258.2086122-UTR-F-serratus_M_contig75:940181..9402831622932258.2086122-UTR-F-serratus_M_contig75:940181..940283Fucus serratus maleUTRF-serratus_M_contig75 940182..940283 -
1690964222.142745-UTR-F-serratus_M_contig75:940181..9402831690964222.142745-UTR-F-serratus_M_contig75:940181..940283Fucus serratus maleUTRF-serratus_M_contig75 940182..940283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932258.0911028-CDS-F-serratus_M_contig75:937813..9379311622932258.0911028-CDS-F-serratus_M_contig75:937813..937931Fucus serratus maleCDSF-serratus_M_contig75 937814..937931 -
1690964222.0765254-CDS-F-serratus_M_contig75:937813..9379311690964222.0765254-CDS-F-serratus_M_contig75:937813..937931Fucus serratus maleCDSF-serratus_M_contig75 937814..937931 -
1622932258.1223242-CDS-F-serratus_M_contig75:938274..9384051622932258.1223242-CDS-F-serratus_M_contig75:938274..938405Fucus serratus maleCDSF-serratus_M_contig75 938275..938405 -
1690964222.0883899-CDS-F-serratus_M_contig75:938274..9384051690964222.0883899-CDS-F-serratus_M_contig75:938274..938405Fucus serratus maleCDSF-serratus_M_contig75 938275..938405 -
1622932258.1348407-CDS-F-serratus_M_contig75:938671..9387471622932258.1348407-CDS-F-serratus_M_contig75:938671..938747Fucus serratus maleCDSF-serratus_M_contig75 938672..938747 -
1690964222.0992246-CDS-F-serratus_M_contig75:938671..9387471690964222.0992246-CDS-F-serratus_M_contig75:938671..938747Fucus serratus maleCDSF-serratus_M_contig75 938672..938747 -
1622932258.1519809-CDS-F-serratus_M_contig75:939046..9392251622932258.1519809-CDS-F-serratus_M_contig75:939046..939225Fucus serratus maleCDSF-serratus_M_contig75 939047..939225 -
1690964222.110873-CDS-F-serratus_M_contig75:939046..9392251690964222.110873-CDS-F-serratus_M_contig75:939046..939225Fucus serratus maleCDSF-serratus_M_contig75 939047..939225 -
1622932258.1713998-CDS-F-serratus_M_contig75:939586..9397181622932258.1713998-CDS-F-serratus_M_contig75:939586..939718Fucus serratus maleCDSF-serratus_M_contig75 939587..939718 -
1690964222.1245458-CDS-F-serratus_M_contig75:939586..9397181690964222.1245458-CDS-F-serratus_M_contig75:939586..939718Fucus serratus maleCDSF-serratus_M_contig75 939587..939718 -
1622932258.1883576-CDS-F-serratus_M_contig75:939965..9401811622932258.1883576-CDS-F-serratus_M_contig75:939965..940181Fucus serratus maleCDSF-serratus_M_contig75 939966..940181 -
1690964222.1341584-CDS-F-serratus_M_contig75:939965..9401811690964222.1341584-CDS-F-serratus_M_contig75:939965..940181Fucus serratus maleCDSF-serratus_M_contig75 939966..940181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18782.1

>prot_F-serratus_M_contig75.18782.1 ID=prot_F-serratus_M_contig75.18782.1|Name=mRNA_F-serratus_M_contig75.18782.1|organism=Fucus serratus male|type=polypeptide|length=284bp
MLAKRRQAARAVFGSVLEKWQEDDVETHTPETSGLGLGVGKVNPPAGRQF
GLGVDGTWLQALEAKMGAIERQMDQIKTPLFSTLRRRGLGAKNAREGKHD
ERDDSGEVVIVKYDPKKKMPWKEDASDVEDYLAGRARRPTLLLQVEMRST
PMPPRVKGPKSRDAVGVHQSGIEPFRSASVAPPAELERPCEASGNAIERQ
QAIRSTPDGERASVRRQQQTQHERRQVENNDEEGKVATLVEMVGKDPTKR
RQELRSFIARARRKCPAEKSDLGVQKVDRVSPV*
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mRNA from alignment at F-serratus_M_contig75:937281..940283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18782.1 ID=mRNA_F-serratus_M_contig75.18782.1|Name=mRNA_F-serratus_M_contig75.18782.1|organism=Fucus serratus male|type=mRNA|length=3003bp|location=Sequence derived from alignment at F-serratus_M_contig75:937281..940283- (Fucus serratus male)
GCGAAAGCTGGCGGCGATGATGCGACGGAGGGACCTTTTCTCTCGCCGTT
CGCCCGAGGAAAGGACGAGAACGCCAGCTTGAACGAAGCTGAGGGAAAAA
AAATGTTGGCGAAGCGAAGGCAGGCTGCAAGAGCTGTCTTTGGCTCCGTC
CTCGAAAAGTGGCAGGAAGATGACGTTGAAACACACACTCCAGAGACGAG
TGGATTGGGTCTCGGCGTTGGAAAAGTCAACCCTCCGGCCGGCCGGCAGT
TTGGCCTCGGTGTAGACGGTACTTGGTTGCAAGCGCTGGAGGCCAAGATG
GGAGCCATCGAGAGACAGGTACTGTCGCGAAATAGCTCGATCCTTTTCAG
CCAAGCGCGTGCCATTTTATTTTCTAAAAAACAATGTGTTCGTTCAATAA
ATCACACTGACGGCACGGGCCATCTCAAATAAAAAAGTGCTGGTGGGGAT
ATCACAGTTTCAGCAATATTCTAGCTGCGCGGCGTAAACGGTAGAGGTCA
TGATAACACCCCTTGTCTGCCTTCTTCACTCAACCGCGCTGTCTACGATA
TCCTCCCGCCTCCAGATGGATCAGATCAAAACGCCGTTGTTTTCTACGCT
TCGTCGCCGCGGTCTGGGTGCCAAGAACGCACGCGAAGGGAAGCATGATG
AACGCGACGATTCTGGGGAAGTTGTGATCGTCAAGTATGATCCGAAGGTA
GTTAGTTGGCCTCGAGAGTACCGGAACCCCCTAGAACGGTGTGACGGCCT
TATATGATTTATGTCTTCGAGCTGCCCTCAGACCACCGTTACATGATTCA
CTGAAGGCGGGCGGTCTTCTTGAGGACGACAATGTCCGCCTCGACGTCAT
ATCCCCGATCGTGAGGCCCGAAGCCAAACGTTGGGGTGATATTTCGTGTG
CTCTACCTGACGGACGGTAGAGAGCTTTCGAAGCCTTCTCTGGCTTCGAT
GTCCCACTCATATGAAACTCTTGTACGGCATCACCCCACGCTAGCGGACC
GACGGAAAATGAAATGCAACCCCGGCTTCGTGCACTCCTCGTTATGATGA
ATCGACAGAAAAAAATGCCTTGGAAGGAGGATGCGTCCGACGTAGAGGAT
TACCTGGCCGGTCGGGCTAGACGTCCCACTCTTTTGCTACAGGTGGAGAT
GAGATCGACTCCGATGCCACCGCGTGTCAAGGGGCCGAAGTCGCGGGACG
CAGTAGGCGTTCACCAGAGCGGGATCGAGCCTTTCAGGTGTGTTTATGTG
TGTTGGCAAGGATATCATCCTGAACCATGCCATTGAGCAGTCTGTAATGC
GGAAGAGACGTGTTTAATGTCGTGTTTTGCCTGTCCATCCGGCGGGGAAC
GCGAAATATCCATTTGAGCAAGCGGTGCCGTGGAAGCAAATGTTTTCATT
GCCGCCCCGCGTGCCTGTCCATCGGGCGAGAAGTTGGCATATTTCGCTTG
TCTGCTATTATACTGCTGCCTTTTTTATCTGTCGTTTTGCTGTTGTGTTT
CTCTCTTCATCGTGCCCTCTATGCTTCGGTATGAAGGTCCGCTTCTGTCG
CTCCTCCGGCGGAATTGGAACGGCCCTGCGAGGCCTCGGGCAACGCGATA
GAACGACAGCAAGTGAGACGCTAGTGTAGGATCAACACGCGACGCGTGTC
ACCGCTGCAGCCGAGAACGCCCCACACCACGCGGGATGACCCTTGAGTGT
CCCCGATGAAGATGCCGGAAAAAATGCTCCCAGCAGCGTCACCTCCCGCT
GGCACTGCACGGTATAATGGTTTATGTATAGAATAAACTCATTTCCGCAC
GAGATGTATCGAATGTTGACGCCAGCGAGGACATGATGTATATCCTCTCG
TTTCCCGCCGTACCTGAACGTGTTACAGGCTATTCGGTCCACCCCAGACG
GCGAGCGGGCCAGCGTACGTCGGCAACAGCAAACCCAGCACGAGAGACGG
CAAGTGGAAAACAATGATGAGGAGGGAAAGGTAGCGACATTGGTGGAGAT
GGTGGGAAAGTGAGTATAAGCCATGCGCCAAATCGATTGTTTTCAGCCGC
GTTTGGCTGCGATCAAGGACAAGTAGCAAGTTAGGTCATTACAAAACAGC
TGGAAACTTGAGCCTCGCGGTTTCAAACGCTTGTCACGCGGTAGGCGCGT
ACCTGGTGCATGATATCCTCTGTGTGAGACGCGCAGGAAGTTAGGTCTGA
AGATATTATTATTATTAACCTGAAAATTACAATCGCTGGGTGCAAAAGCA
CTGTAGACAAAAGCAAGCAAGCGCAATGTTCAAGTACCACCTGGGACTTG
AGATAAACATTGTTACCGTGTATCGTTACCGCGTCGCATTTTTCAATCGA
AGGGACCCTACAAAGAGAAGACAAGAGCTCCGCTCCTTCATCGCCAGGGC
CCGGCGGAAGTGTCCAGCCGAGAAATCCGATTTGGGCGTACAGAAGGTTG
ATAGGGTATCGCCGGTGTAGAAGAACACGGGCAAGGTTTCAGATGTTGGT
GTTTGTAATCTGTTAGAGCACCTTAGATAGCTCTCCTGGCAGAAGATGAC
AAAACAAAAACGATATTAGAGCGCTAGAGCTATTTGTGACGAGCAATGCG
GAATTTTGGGGTTGTCGAACGCGTATCGTCTCCGCGTAACCGAGTAACCT
CCTTGACGGTCACTTGATCGGGAGGTTTTTGTATTGTTTGGAAGTTTTTC
AAATTGAAGTGTTGTCTTCCTTCAGCGTGTAGACCTGCTCTCCGATTCGA
TTATAGGTGCCTTCCTTGAACACTTCGTCGGGAGTCGGGAGATTTTCGAA
TCGACATATTACAGTATTATATCCTATCGTCTTTATTCGATGCATAAGGC
ATCCGCGCTCGCTCGTAAAACATGTTGGTGACGATGAAATCTACTATAAT
AATAACCGTATGTCCTTCTGGCGTTTGGTAACCTGATGATGTTATTCGGA
TTAGAGGGATCGCTTACACCGTGGCAAAATATAAATTATGTACTACCTAC
TTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig75:937281..940283-

>mRNA_F-serratus_M_contig75.18782.1 ID=mRNA_F-serratus_M_contig75.18782.1|Name=mRNA_F-serratus_M_contig75.18782.1|organism=Fucus serratus male|type=CDS|length=1704bp|location=Sequence derived from alignment at F-serratus_M_contig75:937281..940283- (Fucus serratus male)
ATGTTGGCGAAGCGAAGGCAGGCTGCAAGAGCTGTCTTTGGCTCCGTCCT
CGAAAAGTGGCAGGAAGATGACGTTGAAACACACACTCCAGAGACGAGTG
GATTGGGTCTCGGCGTTGGAAAAGTCAACCCTCCGGCCGGCCGGCAGTTT
GGCCTCGGTGTAGACGGTACTTGGTTGCAAGCGCTGGAGGCCAAGATGGG
AGCCATCGAGAGACAGATGTTGGCGAAGCGAAGGCAGGCTGCAAGAGCTG
TCTTTGGCTCCGTCCTCGAAAAGTGGCAGGAAGATGACGTTGAAACACAC
ACTCCAGAGACGAGTGGATTGGGTCTCGGCGTTGGAAAAGTCAACCCTCC
GGCCGGCCGGCAGTTTGGCCTCGGTGTAGACGGTACTTGGTTGCAAGCGC
TGGAGGCCAAGATGGGAGCCATCGAGAGACAGATGGATCAGATCAAAACG
CCGTTGTTTTCTACGCTTCGTCGCCGCGGTCTGGGTGCCAAGAACGCACG
CGAAGGGAAGCATGATGAACGCGACGATTCTGGGGAAGTTGTGATCGTCA
AGTATGATCCGAAGATGGATCAGATCAAAACGCCGTTGTTTTCTACGCTT
CGTCGCCGCGGTCTGGGTGCCAAGAACGCACGCGAAGGGAAGCATGATGA
ACGCGACGATTCTGGGGAAGTTGTGATCGTCAAGTATGATCCGAAGAAAA
AAATGCCTTGGAAGGAGGATGCGTCCGACGTAGAGGATTACCTGGCCGGT
CGGGCTAGACGTCCCACTCTTTTGCTACAGGTGGAGATGAGATCGACTCC
GATGCCACCGCGTGTCAAGGGGCCGAAGTCGCGGGACGCAGTAGGCGTTC
ACCAGAGCGGGATCGAGCCTTTCAGAAAAAAATGCCTTGGAAGGAGGATG
CGTCCGACGTAGAGGATTACCTGGCCGGTCGGGCTAGACGTCCCACTCTT
TTGCTACAGGTGGAGATGAGATCGACTCCGATGCCACCGCGTGTCAAGGG
GCCGAAGTCGCGGGACGCAGTAGGCGTTCACCAGAGCGGGATCGAGCCTT
TCAGGTCCGCTTCTGTCGCTCCTCCGGCGGAATTGGAACGGCCCTGCGAG
GCCTCGGGCAACGCGATAGAACGACAGCAAGTCCGCTTCTGTCGCTCCTC
CGGCGGAATTGGAACGGCCCTGCGAGGCCTCGGGCAACGCGATAGAACGA
CAGCAAGCTATTCGGTCCACCCCAGACGGCGAGCGGGCCAGCGTACGTCG
GCAACAGCAAACCCAGCACGAGAGACGGCAAGTGGAAAACAATGATGAGG
AGGGAAAGGTAGCGACATTGGTGGAGATGGTGGGAAAGCTATTCGGTCCA
CCCCAGACGGCGAGCGGGCCAGCGTACGTCGGCAACAGCAAACCCAGCAC
GAGAGACGGCAAGTGGAAAACAATGATGAGGAGGGAAAGGTAGCGACATT
GGTGGAGATGGTGGGAAAGGACCCTACAAAGAGAAGACAAGAGCTCCGCT
CCTTCATCGCCAGGGCCCGGCGGAAGTGTCCAGCCGAGAAATCCGATTTG
GGCGTACAGAAGGTTGATAGGGTATCGCCGGTGTAGGGACCCTACAAAGA
GAAGACAAGAGCTCCGCTCCTTCATCGCCAGGGCCCGGCGGAAGTGTCCA
GCCGAGAAATCCGATTTGGGCGTACAGAAGGTTGATAGGGTATCGCCGGT
GTAG
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