mRNA_F-serratus_M_contig75.18768.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig75.18768.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 487 bits (1253), Expect = 1.570e-153 Identity = 381/760 (50.13%), Postives = 442/760 (58.16%), Query Frame = 1
Query: 1102 MPAAKVKADVISLTSAIHACSGPAGNWEKAYQLLDGMWQDDTGPRPNKRTYDLVIQACGNGGEWELAVALVDDMRDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWKRAIEVFDEARYVRGXXXXXXXXXXXXXXXXXXXXXXXXSLYFDRMIADGIAPDATAACKGTLAAAELRDGRRALSILEGEKPQRLRDRRL-------------GSEARSADDPLVASPSEAGA-KAKGCR-----RARVEGEXXXXXXXXXXXXXXXEKKR--------------------------------------------------------GGWEAATPSLLNSVLHALDSAGEDAAVLETVERGREKGVKLNGGVYRSALKACGNLGDHDRATALLGRMVEEERITPDIVHWNHALRASATTARWREARSLLEEMRSCDVSPDEFSYSMALKACSAGLWSGDSWSNS-GWSTPDEKDQEEDEELSP---ILRTQGSRDGG---RRGGLPAGGRAKNAIELLQEMESLGIRVRERSFNLAMAACLEGHRDGCTETGHGK-----PPDADIRLAEAALSLFDQLIEAEETPTVLSYALALKACARTANKRRASDLLFDMLQ--------------------AAEDGSSEGAGANAPL--------HIRPGHLESAIAAYNAAEDGAGAQELWRQALRWGVSPRSLG*GAVIVAAVRAKDIGAGSMLFKES*RLGLELGEG 3036
MPAAKVK DVIS TSAIHAC+GP GNWEKAYQLLD MWQD G +P+K TYDLVIQACG+GGEWEL V L+DDMRDLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EWKRA E+FD+ARYV +Y DRM+ADG+A DA A LAAAEL DGRRALS+LEG + + R R GS+ R D L AG + G R + +EGE +KR GGWE TP LLNSVL ALD ED+AVLE V+RGREKG+ LN +YR ALKACGNLGD+ +A +L RM EE +TPDIVHWNHALRASA ARW+E R L+EM + +PDEFSYSMALKACSAGLWSGDSW +S GW EED S L ++G D + +P R K+AIELLQEM+ G+R+ ++ LAMAACLEGHRD E G PP AD+RLAEA L LFD+L+ A ETPT +YA ALKACARTAN +RA+ L + ML A+ D + G ++P +RP HL S I AY+AA D AGA++LW +ALR GVSPRS G A + AA+RA D A L +E+ L LEL G
Sbjct: 1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEGEPEALLERRQRAATAGGEKRHGEESEVRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEES-LTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGA------EEDTSSSRRRNALSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPPQPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLELARG 753
BLAST of mRNA_F-serratus_M_contig75.18768.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 479 bits (1234), Expect = 4.550e-146 Identity = 397/808 (49.13%), Postives = 456/808 (56.44%), Query Frame = 1
Query: 946 VARSGREDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLEVEMPAAKVKADVISLTSAIHACSGPAGNWEKAYQLLDGMWQDDTGPRPNKRTYDLVIQACGNGGEWELAVALVDDMRDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWKRAIEVFDEARYVRGXXXXXXXXXXXXXXXXXXXXXXXXSLYFDRMIADGIAPDATAACKGTLAAAELRDGRRALSILEGEKPQRLRDRRL--------GSEARSADD------------PLVASPSEAG------------------------AKAKGCRRARVEGEXXXXXXXXXXXXXXXEKKR------------------------------GGWEAATPSLLNSVLHALDSAGEDAAVLETVERGREKGVKLNGGVYRSALKACGNLGDHDRATALLGRMVEEERITPDIVHWNHALRASATTARWREARSLLEEMRSCDVSPDEFSYSMALKACSAGLWSGDSWSNS-GWSTPDEKDQEEDEELSPILRTQGSRDGG---RRGGLPAGGRAKNAIELLQEMESLGIRVRERSFNLAMAACLEGHRDGCTETGHGK-----PPDADIRLAEAALSLFDQLIEAEETPTVLSYALALKACARTANKRRASDLLFDMLQAAE------------------------DGSSEGAGANAPLH----IRPGHLESAIAAYNAAEDGAGAQELWRQALRWGVSPRSLG*GAVIVAAVRAKDIGAGSMLFKES*RLGLELGEG 3036
VARSGREDVA XXXXXXXXXXXX LLEV+MPAAKVK +GP GNWEKAYQLLD MWQD G +P+K TYDLVIQACG+GGEWEL V L+DDMRDLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EWKRA E+FDEARYV +Y DRM+ADG+A DA A LAAAEL DGRRALS+LEG + + R R G E +D+ P + G A A G +R E E E++ GGWE TP LL SVL ALD ED+AVLE V+RGREKGV LN +YR ALKACGNLGD+D+A +L RM EE +TPDIVHWNHALRASA ARW+E R L+EM + +PDEFSYSMALKACSAGLWSGDSW +S GW ++K L +G DG + +P R KNAIELLQEM+ G+R+ ++ LAMAACLEGHRD E G PP AD+RLAEAAL LFD+L+ A ETPT +YA ALKACARTAN +RA+ L + ML AA DG + +P +RP HL SAIAAY+AA D GA++LW +ALR GVSPRS G A + A+RA D A L +E+ L LEL G
Sbjct: 366 VARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDSVDDGVGGWEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEES-LTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSCR---RKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLELARG 1169 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig75.18768.1 >prot_F-serratus_M_contig75.18768.1 ID=prot_F-serratus_M_contig75.18768.1|Name=mRNA_F-serratus_M_contig75.18768.1|organism=Fucus serratus male|type=polypeptide|length=958bp MDAYRLRGSIMAAGRQGRWAEVLRVLGRWEKQANTRAKLDTKTYNFAVSAback to top mRNA from alignment at F-serratus_M_contig75:711801..726291- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig75.18768.1 ID=mRNA_F-serratus_M_contig75.18768.1|Name=mRNA_F-serratus_M_contig75.18768.1|organism=Fucus serratus male|type=mRNA|length=14491bp|location=Sequence derived from alignment at F-serratus_M_contig75:711801..726291- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig75:711801..726291- >mRNA_F-serratus_M_contig75.18768.1 ID=mRNA_F-serratus_M_contig75.18768.1|Name=mRNA_F-serratus_M_contig75.18768.1|organism=Fucus serratus male|type=CDS|length=5748bp|location=Sequence derived from alignment at F-serratus_M_contig75:711801..726291- (Fucus serratus male)back to top |