mRNA_F-serratus_M_contig75.18758.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: D7FQ99_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ99_ECTSI) HSP 1 Score: 252 bits (643), Expect = 2.660e-81 Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHT-ASGTP 417
MFLQLFVVNKSGGLIYNQNLSSAAPRL SNDWLRLGSTFHSLHAIA+Q VAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLG VLQEIYELYTDYVLKNPFYELEMPIRCELFTL+LE LIERH+ A G P
Sbjct: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLNSNDWLRLGSTFHSLHAIAAQ-VAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAGGAP 139
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: A0A835ZDL6_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL6_9STRA) HSP 1 Score: 204 bits (519), Expect = 9.150e-63 Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHTAS 408
MFLQLF++NKSG LI++Q+LS AAPRL+SND LRLGSTFHSLHAIA+Q VAP+ SSGIEKLET T++L+ QTLTG KFVITA+ TP+L VLQ IYELYTDYVLKNPFYELEMPIRCELFT HLE L+ER+ A+
Sbjct: 1 MFLQLFIINKSGSLIFHQDLSPAAPRLSSNDSLRLGSTFHSLHAIAAQ-VAPIASSGIEKLETATYRLRCLQTLTGAKFVITAQPNTPELEVVLQGIYELYTDYVLKNPFYELEMPIRCELFTQHLEKLVERYNAA 135
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: A0A7S2RJT7_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJT7_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.170e-58 Identity = 98/143 (68.53%), Postives = 115/143 (80.42%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHTASGTPGAKG 429
MFL LF++++SGGLI+NQ+LS APRL +NDWLRLGSTFH HAIASQ +APV SSGIEKLETD+F L+ FQ TG+KFVITAEAGT DL VLQ +Y+ YTDYVLKNPFYELEMPIRCELFT + +I+ H G+ KG
Sbjct: 1 MFLHLFIISRSGGLIFNQDLSELAPRLNANDWLRLGSTFHGFHAIASQ-IAPVVSSGIEKLETDSFVLRCFQPPTGIKFVITAEAGTQDLEVVLQRVYQAYTDYVLKNPFYELEMPIRCELFTEAIARVIQSH---GSQTGKG 139
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: K8Z5G7_NANGC (Trafficking protein particle complex subunit (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z5G7_NANGC) HSP 1 Score: 189 bits (481), Expect = 6.640e-57 Identity = 95/134 (70.90%), Postives = 113/134 (84.33%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHT 402
MFL LFV+++SGGLIYN++LSS+APRLT N+WL LGSTFH LH+IA+Q VAP+ SSGIEKLE D KLQ FQ+ TGVKFV+TAE GTPDL VL IYELY DYVLKNPFYE++MPIRC+LF +E LIER++
Sbjct: 4 MFLHLFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQ-VAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNS 136
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: K3WRL1_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRL1_GLOUD) HSP 1 Score: 179 bits (455), Expect = 5.650e-53 Identity = 89/138 (64.49%), Postives = 108/138 (78.26%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHTASGT 414
M L+++NKSGGL+Y Q+LSSAAP+L+SND LRLGSTFHS+HAIA +PV S GIE LETDTF+LQ FQT TG+KF +TA GTPDL AVL+ +YELY DYVLKNPFYELEMPIRC LF L+ +++ A +
Sbjct: 1 MLHSLYIINKSGGLVYQQDLSSAAPKLSSNDHLRLGSTFHSMHAIAVL-ASPVASGGIETLETDTFRLQCFQTPTGLKFFLTAALGTPDLDAVLRTVYELYVDYVLKNPFYELEMPIRCSLFNSGLKTFVDKFNADSS 137
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: A0A2D4CAE8_PYTIN (Trafficking protein particle complex subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAE8_PYTIN) HSP 1 Score: 179 bits (453), Expect = 1.130e-52 Identity = 91/135 (67.41%), Postives = 104/135 (77.04%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHTA 405
M L+++NKSGGLIY +LSSAAPRL+SND LRLGSTFHS+HAIA APV S GIE LETDTF+LQ FQT TG+KF ITA GTPDL L+ IYELY DYVLKNPFYELEMPIRC LF L+ +++ A
Sbjct: 1 MLHSLYIINKSGGLIYQLDLSSAAPRLSSNDHLRLGSTFHSMHAIAVL-AAPVASGGIESLETDTFRLQCFQTPTGIKFFITAALGTPDLDHALRTIYELYVDYVLKNPFYELEMPIRCSLFNAGLKSFVDKFNA 134
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: F0WDB3_9STRA (Trafficking protein particle complex subunit n=3 Tax=Albugo TaxID=65356 RepID=F0WDB3_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.350e-50 Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIER 396
M L+++NKSGGLIY Q+LS AAP+L+SND LRLGSTFHS+HAIA+ APV S GI LETDTF+LQ FQTLTG+KF ITA+ GT D+ L+ IYELY DYVLKNPFYELEMPIRC LF L+ +++
Sbjct: 1 MLHALYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAAL-AAPVASGGINSLETDTFRLQCFQTLTGIKFFITAQLGTLDIDNALKTIYELYVDYVLKNPFYELEMPIRCTLFNAGLKLFVDK 131
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: A0A7S4A735_9STRA (Trafficking protein particle complex subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A735_9STRA) HSP 1 Score: 170 bits (431), Expect = 2.520e-49 Identity = 84/138 (60.87%), Postives = 106/138 (76.81%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHTASGT 414
M+LQL ++NKSGGL+YNQ+LS A +L SNDWLR+GSTFHSLH IA + + P SSGI LET +F L+ +T+TG+KFV+TAE GT L VL+ +YELY+DYVLKNPF++LEMPIRC LFT H+ L E +GT
Sbjct: 1 MYLQLMIINKSGGLVYNQDLSPQAAQLDSNDWLRIGSTFHSLHEIA-RSIPPGRSSGIVALETSSFALRCLETITGIKFVLTAERGTQVLEPVLRMVYELYSDYVLKNPFHDLEMPIRCRLFTEHVTELFESFHTTGT 137
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: A0A397BNG8_9STRA (Trafficking protein particle complex subunit n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BNG8_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.040e-48 Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITA--EAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIERHTASGT 414
M L LFV+NK+GG++Y Q+LS+ AP+++SND LRLGSTFHS+HAIA+ APV S GI ++TD+F+LQ FQTLTG KF ITA + DL AVL++IYELY DYVLKNPFYELEMPIRC LF +L+ L+++ S T
Sbjct: 9 MLLSLFVINKAGGVVYQQDLSAEAPKISSNDRLRLGSTFHSIHAIAAL-AAPVASKGIVSMDTDSFRLQCFQTLTGTKFFITALPNISSGDLEAVLRQIYELYADYVLKNPFYELEMPIRCHLFYTNLQLLVDKVNTSST 147
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Match: A0A6G0XR37_9STRA (Trafficking protein particle complex subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR37_9STRA) HSP 1 Score: 167 bits (423), Expect = 3.010e-48 Identity = 87/134 (64.93%), Postives = 106/134 (79.10%), Query Frame = 1
Query: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITA--EAGTPDLGAVLQEIYELYTDYVLKNPFYELEMPIRCELFTLHLEGLIER 396
M L L+V+NK+GGLIY Q+LSS AP+L+SND+LRLGSTFHS+HAIA+ APV S GI +ETD+F+LQ FQ +TG KF ITA + +L AVL +IYELY DYVLKNPFYELEMPIRC LF +L+ L+ER
Sbjct: 1 MLLSLYVINKAGGLIYQQDLSSEAPKLSSNDYLRLGSTFHSMHAIAAL-AAPVLSKGILSMETDSFRLQCFQAMTGTKFFITALPVLSSAELDAVLLQIYELYADYVLKNPFYELEMPIRCHLFHSNLQLLVER 133 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig75.18758.1 >prot_F-serratus_M_contig75.18758.1 ID=prot_F-serratus_M_contig75.18758.1|Name=mRNA_F-serratus_M_contig75.18758.1|organism=Fucus serratus male|type=polypeptide|length=144bp MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIASQQVback to top mRNA from alignment at F-serratus_M_contig75:414636..417549- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig75.18758.1 ID=mRNA_F-serratus_M_contig75.18758.1|Name=mRNA_F-serratus_M_contig75.18758.1|organism=Fucus serratus male|type=mRNA|length=2914bp|location=Sequence derived from alignment at F-serratus_M_contig75:414636..417549- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig75:414636..417549- >mRNA_F-serratus_M_contig75.18758.1 ID=mRNA_F-serratus_M_contig75.18758.1|Name=mRNA_F-serratus_M_contig75.18758.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig75:414636..417549- (Fucus serratus male)back to top |