mRNA_F-serratus_M_contig75.18753.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18753.1
Unique NamemRNA_F-serratus_M_contig75.18753.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig75.18753.1 vs. uniprot
Match: A0A6H5L5C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.560e-16
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 3 
Query:  336 MVETPAEIRAAFGLYDMEGEGCVSGEHLETWLFDAGFRLSARYLTSLLRSLCKATEDGKRLLFEYRRRLGKRGTE 560
            M+ETPAE+RAAFGL+D EG+G V+ + L+  L DA  R+SARYL  LL  +C+   DGKRL FEY+ RL    TE
Sbjct:    1 MMETPAEVRAAFGLFDSEGKGYVAADLLQARLLDASSRISARYLKQLLSRVCRVAGDGKRLFFEYKLRLKNLTTE 75
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BLAST of mRNA_F-serratus_M_contig75.18753.1 vs. uniprot
Match: D7FQA6_ECTSI (DBC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.830e-6
Identity = 37/75 (49.33%), Postives = 44/75 (58.67%), Query Frame = 3 
Query:    3 GASGDLCVATIADLIQGGG------TSGEDNVGEN------QSASDATFEARLGAEFLWGLVSRDWAALMLDCLR 191
            G  GDL  ATI+DL+          TSG   V         +   +ATFEA+LGA FLWGLVSRDWA ++LDCLR
Sbjct:  567 GTPGDLHTATISDLVSRKSSDVVPSTSGTVEVTRGGGGHKARKGLEATFEAKLGAIFLWGLVSRDWAGVLLDCLR 641
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5C6_9PHAE3.560e-1656.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQA6_ECTSI2.830e-649.33DBC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:352815..355696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDBC1/CARP1 catalytically inactive NUDIX hydrolase domain
Ec32 orthologEc-01_006840.1
Exons5
Model size1459
Cds size573
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932262.0847857-UTR-F-serratus_M_contig75:352814..3535271622932262.0847857-UTR-F-serratus_M_contig75:352814..353527Fucus serratus maleUTRF-serratus_M_contig75 352815..353527 -
1690964224.0630276-UTR-F-serratus_M_contig75:352814..3535271690964224.0630276-UTR-F-serratus_M_contig75:352814..353527Fucus serratus maleUTRF-serratus_M_contig75 352815..353527 -
1622932262.1913216-UTR-F-serratus_M_contig75:355062..3551191622932262.1913216-UTR-F-serratus_M_contig75:355062..355119Fucus serratus maleUTRF-serratus_M_contig75 355063..355119 -
1690964224.1136365-UTR-F-serratus_M_contig75:355062..3551191690964224.1136365-UTR-F-serratus_M_contig75:355062..355119Fucus serratus maleUTRF-serratus_M_contig75 355063..355119 -
1622932262.2115955-UTR-F-serratus_M_contig75:355580..3556961622932262.2115955-UTR-F-serratus_M_contig75:355580..355696Fucus serratus maleUTRF-serratus_M_contig75 355581..355696 -
1690964224.1270618-UTR-F-serratus_M_contig75:355580..3556961690964224.1270618-UTR-F-serratus_M_contig75:355580..355696Fucus serratus maleUTRF-serratus_M_contig75 355581..355696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932262.1055748-CDS-F-serratus_M_contig75:353527..3538251622932262.1055748-CDS-F-serratus_M_contig75:353527..353825Fucus serratus maleCDSF-serratus_M_contig75 353528..353825 -
1690964224.0769067-CDS-F-serratus_M_contig75:353527..3538251690964224.0769067-CDS-F-serratus_M_contig75:353527..353825Fucus serratus maleCDSF-serratus_M_contig75 353528..353825 -
1622932262.120598-CDS-F-serratus_M_contig75:354103..3541951622932262.120598-CDS-F-serratus_M_contig75:354103..354195Fucus serratus maleCDSF-serratus_M_contig75 354104..354195 -
1690964224.086215-CDS-F-serratus_M_contig75:354103..3541951690964224.086215-CDS-F-serratus_M_contig75:354103..354195Fucus serratus maleCDSF-serratus_M_contig75 354104..354195 -
1622932262.1445386-CDS-F-serratus_M_contig75:354485..3546511622932262.1445386-CDS-F-serratus_M_contig75:354485..354651Fucus serratus maleCDSF-serratus_M_contig75 354486..354651 -
1690964224.094522-CDS-F-serratus_M_contig75:354485..3546511690964224.094522-CDS-F-serratus_M_contig75:354485..354651Fucus serratus maleCDSF-serratus_M_contig75 354486..354651 -
1622932262.165329-CDS-F-serratus_M_contig75:355045..3550621622932262.165329-CDS-F-serratus_M_contig75:355045..355062Fucus serratus maleCDSF-serratus_M_contig75 355046..355062 -
1690964224.1038187-CDS-F-serratus_M_contig75:355045..3550621690964224.1038187-CDS-F-serratus_M_contig75:355045..355062Fucus serratus maleCDSF-serratus_M_contig75 355046..355062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18753.1prot_F-serratus_M_contig75.18753.1Fucus serratus malepolypeptideF-serratus_M_contig75 353528..355062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18753.1

>prot_F-serratus_M_contig75.18753.1 ID=prot_F-serratus_M_contig75.18753.1|Name=mRNA_F-serratus_M_contig75.18753.1|organism=Fucus serratus male|type=polypeptide|length=191bp
MLDCLRLYAKAPDGETDRAVTSSDDAATTADPTGRREKLPQVDRQGQGGQ
DICEMVETPAEIRAAFGLYDMEGEGCVSGEHLETWLFDAGFRLSARYLTS
LLRSLCKATEDGKRLLFEYRRRLGKRGTETHDAGSGGSAPPQPQPPELNK
AVQAAYGVDVSVAASGSPSTVDESARAAAENTDASDGGQT*
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mRNA from alignment at F-serratus_M_contig75:352815..355696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18753.1 ID=mRNA_F-serratus_M_contig75.18753.1|Name=mRNA_F-serratus_M_contig75.18753.1|organism=Fucus serratus male|type=mRNA|length=2882bp|location=Sequence derived from alignment at F-serratus_M_contig75:352815..355696- (Fucus serratus male)
AGGGAGCATCTGGGGACCTCTGCGTCGCCACCATTGCTGACCTCATCCAA
GGTGGCGGGACCTCGGGCGAGGACAATGTCGGCGAGAACCAAAGTGCTTC
GGATGCCACCTTCGAGGTTGGTATCGCGAGAGGCGAGATCGTTTGACGCC
CGCGAGGGGTGCTATTGCGTTATCATAGATCATAGGTCATGGCTTGGACG
TTGTGCAAAAGGTGGTTTTATATTTTTTAATGAAGCGATACTCCGGAGTA
TTTTCGAGCGTCTTTCCAATATGAGCTTGCCGACCGTTGCTATAAATGTA
TGATACCGTAAAACAGGCGGGCTTGGCTACTATATATGACTTACGGAGTA
TATTTTTATCTTGTACGTAGTGTAGCGATGGTCGCAGCGGCAGTCGCAGT
AACGGCGCGCGTCAGCCTCGTGCTCGGCCGAAACGCTTTTGAAGAAGTCA
ACACGAGCGATCTTGCCCTTCGTCCTGATGGGGTCACCGGTGCTTTTTTT
TTCTTGAGTCTCTTCGTCTACCGTACAAAATCTTTACCGGCTTTCTGTAT
TTTCTCTCCATAAATACCATTTGGCAGGCTCGGCTCGGGGCAGAGTTCTT
GTGGGGGCTAGTGTCACGGGATTGGGCGGCCTTGATGCTGGACTGCCTTA
GGTCAGTCGGGTCTGTGTCTGTGGTGAATTGAAATGAATCATTCGAGGTT
TGGACGAGCCGTAAGCGAGGAGGCACTTGTTCCGCGGCCCTCCGCCATCG
AGAATAACTAACCTGCTCAAGAACATTTGATATACCATGACATGCACCTG
AGTTCTCGGCCAGTACTCTTGTCGAGGTTCGAAGGGCCGATGGCATACAT
TTTGATTTTTATTGTCGATTCCTGTACGTCTTTTTTTGTGGGTGTGACGC
TAATGACCCTTCGCCTCAAAATCTAGTGAGGACGCTCTCGCCCAAATTGT
GTCCTGAGTATGAAGTATACAACCATGACCTCGACCTCGACCTTGGGATT
ATTGTTGCTATGAAAACTACAAATCATTCTATGTCGCCTGTGCAGGCTTT
ACGCAAAAGCTCCGGATGGAGAGACGGATCGGGCGGTCACCTCTTCGGAC
GATGCGGCAACAACCGCAGACCCCACCGGAAGGCGGGAAAAGTTACCGCA
AGTTGACCGCCAGGGGCAAGGAGGACAAGATATTTGCGAGATGGTAGAGA
CGCCCGCAGAGGTAAGGGGAGTCCTGTGTATGACGTACTTCATAAGACCA
TGCTTGACAGATGGAGCAAATCAGCGCCATCGATTTTATTTTGAGCGTGA
AAGCCTGTGCGCTCATGCGGCGTGCAGCGGGAAGTTTTGCGTTGTGTTTT
TGTGTTGTTACGGGGGTGGGGTCTTATGGAAGTTGTAGGTATGTTTATGC
GTATCATGGTAGCGTTATTTTGTGTCCGTTGTGTTTACTCGGCTGTCTGA
TTCCCAGCTGCAGCTTGTCCTGTATCCTGGTATGTTTTAACGTCGAGTCA
GATCCGAGCAGCCTTTGGGCTTTACGACATGGAAGGAGAAGGCTGCGTGT
CGGGCGAACATCTGGAGACGTGGCTATTCGACGCCGGCTTCAGGTACAGT
AGCTTAGCTCGCGCGCCCTCATCATCACCGTATCGTGCGTCTTTAACAAC
AGACGGCTTTCACAAAAGGGTGGTCAAGCGGCGGATGGCAGCCTCAAAAA
AAACCTTAGATCTTGTATTAAAAATCGGTACCGTTGCCTTAAATTTTATC
CTTTCAAACACAAGAGTCGAACGATCGAAGTCACCATCCCACATTTTTTG
GAGGAGCAAAAGGGACGCACGTACTGAGCCTTCTGCCCCCGTCCCGATCC
CCGCGCTCGAGTAATGAGCAGACTATCGGCGCGTTACTTAACATCTCTCC
TGCGGAGCCTCTGTAAAGCCACAGAAGACGGCAAGCGCTTGTTGTTCGAG
TACAGGCGGCGTCTCGGGAAGCGGGGAACGGAGACTCACGATGCCGGCTC
GGGAGGCTCTGCGCCGCCACAGCCGCAGCCACCTGAACTCAACAAGGCGG
TGCAGGCTGCTTATGGTGTTGATGTTAGCGTCGCCGCGAGCGGGAGCCCA
TCTACCGTGGACGAGTCGGCACGGGCAGCCGCCGAAAATACTGACGCGAG
CGACGGCGGCCAGACCTGAAAATATGTGGATGAAACCGGTACACACGAGC
ACTTTGTTCAGGTGCTGTCATCCTTGAAGGGTCGATTGAGAACAGGAATA
TGTAACCGTCGCTGAAAAGAAAGGTCTGGTTAAAGGGACGAGCGAGCGAA
CATTGAGACAAGGGCGAAATGAAATGGCGCTCGAGTGGGGGCGGCGGGAG
GGCGAACACGCAGGGAGGCCAATCAACCTAAGACTCGAGTAGCTGCTTTG
AAGGCAGCTCCGCTGTAGTCGCTTTTAATATGGAGCCATTTTTTAGAATC
GCGCTTCTCTTGAAACCTGCGGCCAAAACGGTAATTTTTTCCTCAAACGG
CCGTCTTCGTCTTGTGTAGTTTTGGTGGTAGATAGTGACCATTTGGGGCG
CTCTTACTTGCTTTCAATACGGTACTACCCCGAAAGTGTTTGGGGGGGTC
TGTTGCTTACTTGTGTAGGAGGTGGATAGCGAAAAATTTCAAGTCTCATT
CAGTCATCAGCGCGAACGATTGAGAATAGGAAGCGTTACACAGTATTACA
CTTGCTCCCCCATTGCGCGGAAAGGTCCCTCGCCGCTCAACTTGGACAAT
GTGCGAACATTATACATTATACATTATACATTATACAACCTACGCAGTAA
AAGGACGACTCGTGTATTCTGGTGACGTATCGTTTTCAATAATACTATTA
ATAGAATACAAAACCTCTTGAGTTCCGCGTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig75:352815..355696-

>mRNA_F-serratus_M_contig75.18753.1 ID=mRNA_F-serratus_M_contig75.18753.1|Name=mRNA_F-serratus_M_contig75.18753.1|organism=Fucus serratus male|type=CDS|length=1146bp|location=Sequence derived from alignment at F-serratus_M_contig75:352815..355696- (Fucus serratus male)
ATGCTGGACTGCCTTAGATGCTGGACTGCCTTAGGCTTTACGCAAAAGCT
CCGGATGGAGAGACGGATCGGGCGGTCACCTCTTCGGACGATGCGGCAAC
AACCGCAGACCCCACCGGAAGGCGGGAAAAGTTACCGCAAGTTGACCGCC
AGGGGCAAGGAGGACAAGATATTTGCGAGATGGTAGAGACGCCCGCAGAG
GCTTTACGCAAAAGCTCCGGATGGAGAGACGGATCGGGCGGTCACCTCTT
CGGACGATGCGGCAACAACCGCAGACCCCACCGGAAGGCGGGAAAAGTTA
CCGCAAGTTGACCGCCAGGGGCAAGGAGGACAAGATATTTGCGAGATGGT
AGAGACGCCCGCAGAGATCCGAGCAGCCTTTGGGCTTTACGACATGGAAG
GAGAAGGCTGCGTGTCGGGCGAACATCTGGAGACGTGGCTATTCGACGCC
GGCTTCAGATCCGAGCAGCCTTTGGGCTTTACGACATGGAAGGAGAAGGC
TGCGTGTCGGGCGAACATCTGGAGACGTGGCTATTCGACGCCGGCTTCAG
ACTATCGGCGCGTTACTTAACATCTCTCCTGCGGAGCCTCTGTAAAGCCA
CAGAAGACGGCAAGCGCTTGTTGTTCGAGTACAGGCGGCGTCTCGGGAAG
CGGGGAACGGAGACTCACGATGCCGGCTCGGGAGGCTCTGCGCCGCCACA
GCCGCAGCCACCTGAACTCAACAAGGCGGTGCAGGCTGCTTATGGTGTTG
ATGTTAGCGTCGCCGCGAGCGGGAGCCCATCTACCGTGGACGAGTCGGCA
CGGGCAGCCGCCGAAAATACTGACGCGAGCGACGGCGGCCAGACCTGAAC
TATCGGCGCGTTACTTAACATCTCTCCTGCGGAGCCTCTGTAAAGCCACA
GAAGACGGCAAGCGCTTGTTGTTCGAGTACAGGCGGCGTCTCGGGAAGCG
GGGAACGGAGACTCACGATGCCGGCTCGGGAGGCTCTGCGCCGCCACAGC
CGCAGCCACCTGAACTCAACAAGGCGGTGCAGGCTGCTTATGGTGTTGAT
GTTAGCGTCGCCGCGAGCGGGAGCCCATCTACCGTGGACGAGTCGGCACG
GGCAGCCGCCGAAAATACTGACGCGAGCGACGGCGGCCAGACCTGA
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