mRNA_F-serratus_M_contig75.18752.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18752.1
Unique NamemRNA_F-serratus_M_contig75.18752.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig75.18752.1 vs. uniprot
Match: A0A6H5L288_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 6.640e-48
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 GVESAAVLGAVLAAAWGGWMAGQHAEKLFWGIVMAVAGGIIGNWFSDLNQGGEGRVNWGNWRCNALAFAGLVSAGRYAASLEPEERLAVLESAFFPALVGQGIGTISG 324
            G E  A++ AV A AWG WMAGQH  KL WGI+MAV GGIIGNWFS LN G EGR+ WG+WRCNAL+FAG+++AGRYAASLEPEER A LESAFF ALV QG GTISG
Sbjct:  146 GAEKTALVAAVAAMAWGSWMAGQHPHKLGWGIIMAVMGGIIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG 253
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L288_9PHAE6.640e-4873.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:348734..349668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size339
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18752.1prot_F-serratus_M_contig75.18752.1Fucus serratus malepolypeptideF-serratus_M_contig75 348734..349668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932261.97837-CDS-F-serratus_M_contig75:348733..3488451622932261.97837-CDS-F-serratus_M_contig75:348733..348845Fucus serratus maleCDSF-serratus_M_contig75 348734..348845 +
1690964224.0264528-CDS-F-serratus_M_contig75:348733..3488451690964224.0264528-CDS-F-serratus_M_contig75:348733..348845Fucus serratus maleCDSF-serratus_M_contig75 348734..348845 +
1622932262.0019383-CDS-F-serratus_M_contig75:349216..3492741622932262.0019383-CDS-F-serratus_M_contig75:349216..349274Fucus serratus maleCDSF-serratus_M_contig75 349217..349274 +
1690964224.038592-CDS-F-serratus_M_contig75:349216..3492741690964224.038592-CDS-F-serratus_M_contig75:349216..349274Fucus serratus maleCDSF-serratus_M_contig75 349217..349274 +
1622932262.0260675-CDS-F-serratus_M_contig75:349499..3496681622932262.0260675-CDS-F-serratus_M_contig75:349499..349668Fucus serratus maleCDSF-serratus_M_contig75 349500..349668 +
1690964224.0498602-CDS-F-serratus_M_contig75:349499..3496681690964224.0498602-CDS-F-serratus_M_contig75:349499..349668Fucus serratus maleCDSF-serratus_M_contig75 349500..349668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18752.1

>prot_F-serratus_M_contig75.18752.1 ID=prot_F-serratus_M_contig75.18752.1|Name=mRNA_F-serratus_M_contig75.18752.1|organism=Fucus serratus male|type=polypeptide|length=113bp
GVESAAVLGAVLAAAWGGWMAGQHAEKLFWGIVMAVAGGIIGNWFSDLNQ
GGEGRVNWGNWRCNALAFAGLVSAGRYAASLEPEERLAVLESAFFPALVG
QGIGTISGEPRRE
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mRNA from alignment at F-serratus_M_contig75:348734..349668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18752.1 ID=mRNA_F-serratus_M_contig75.18752.1|Name=mRNA_F-serratus_M_contig75.18752.1|organism=Fucus serratus male|type=mRNA|length=935bp|location=Sequence derived from alignment at F-serratus_M_contig75:348734..349668+ (Fucus serratus male)
GGAGTGGAGAGTGCGGCAGTCTTGGGCGCGGTGTTGGCGGCAGCGTGGGG
CGGCTGGATGGCAGGGCAGCATGCGGAAAAGCTCTTCTGGGGAATCGTCA
TGGCTGTCGCGGGTGAACGTCAAGAGCGAAATGTTTGGGCATCGCGTTTT
TTTCTTCAATATTCGTACGAATGTTCTATGGATCTCCAGCAGGGTTAACG
TCGTAATGGTTCTCCTGTTTCGCAGGGGGTTTGGCGACAATGGCGACAAT
AGCGGCAATAATAATCCGCTATCCTGTGTCGAAAACGCTCTAAAGCCCTC
CACGACGGGGGGGGGGGATGGGAAGATGTTGCCCTTCTTCCGCGTCTCTG
GTTTTTGCTATTAATACTTAGTTAGAAGCGGTACACAAACATCGTGCAAT
GAATTTCGTATTTCCACAGCTAAAATGAATGTATCACTCCATTTCATTAC
CTCTGCCTGACATGTTCGCATCCTTCTTCACAGGCGGCATCATCGGCAAC
TGGTTTTCGGACTTGAACCAAGGGGGCGAAGGCAGAGTAAAGTAAGATGA
TGAGATTATGACCTTTCTCTTTCAATCTTGCCGTGAACTAACTACCCGAG
GCAACTAATTGATGTGGAAAATATTCAAGTCCAGTTCGATGGAGTAGTAT
TTGCTTCCAGGCTACGGCTACCGGGCGGCCCCTGTGCGCCATGGGGCGCA
GCCATCATCCCGAACCAACTGTCTCTTCCCTCGCGACTCGGTTTTCGAAT
CTCCCCATTGTTGCAGCTGGGGGAACTGGCGGTGCAACGCCCTGGCGTTT
GCAGGCCTGGTGAGCGCCGGACGTTACGCGGCTAGCTTGGAGCCGGAGGA
GCGTCTGGCCGTGCTAGAGAGCGCCTTTTTTCCGGCTCTGGTAGGCCAGG
GGATCGGGACGATTTCGGGTGAGCCTCGGCGCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig75:348734..349668+

>mRNA_F-serratus_M_contig75.18752.1 ID=mRNA_F-serratus_M_contig75.18752.1|Name=mRNA_F-serratus_M_contig75.18752.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig75:348734..349668+ (Fucus serratus male)
GGAGTGGAGAGTGCGGCAGTCTTGGGCGCGGTGTTGGCGGCAGCGTGGGG
CGGCTGGATGGCAGGGCAGCATGCGGAAAAGCTCTTCTGGGGAATCGTCA
TGGCTGTCGCGGGGAGTGGAGAGTGCGGCAGTCTTGGGCGCGGTGTTGGC
GGCAGCGTGGGGCGGCTGGATGGCAGGGCAGCATGCGGAAAAGCTCTTCT
GGGGAATCGTCATGGCTGTCGCGGGCGGCATCATCGGCAACTGGTTTTCG
GACTTGAACCAAGGGGGCGAAGGCAGAGTAAAGCGGCATCATCGGCAACT
GGTTTTCGGACTTGAACCAAGGGGGCGAAGGCAGAGTAAACTGGGGGAAC
TGGCGGTGCAACGCCCTGGCGTTTGCAGGCCTGGTGAGCGCCGGACGTTA
CGCGGCTAGCTTGGAGCCGGAGGAGCGTCTGGCCGTGCTAGAGAGCGCCT
TTTTTCCGGCTCTGGTAGGCCAGGGGATCGGGACGATTTCGGGTGAGCCT
CGGCGCGAACTGGGGGAACTGGCGGTGCAACGCCCTGGCGTTTGCAGGCC
TGGTGAGCGCCGGACGTTACGCGGCTAGCTTGGAGCCGGAGGAGCGTCTG
GCCGTGCTAGAGAGCGCCTTTTTTCCGGCTCTGGTAGGCCAGGGGATCGG
GACGATTTCGGGTGAGCCTCGGCGCGAA
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