mRNA_F-serratus_M_contig749.18723.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI) HSP 1 Score: 214 bits (546), Expect = 5.060e-62 Identity = 108/137 (78.83%), Postives = 121/137 (88.32%), Query Frame = 1
Query: 4 LDLVAGGARALTWGSDGYRLVSVG------AEVGGTGSVQGIVAFDFFRRARSNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE 396
LDL+AGGARAL+W +GYRL+SVG A VGG QGIVAFDF RRARSNL+S++L+LQGSDRIALVDSQPWSAQVLLWRVLPVHPGYL++NAPLRHVSTSRAGT+VAVAG+RG AVYSRPTNRWRLFGNI +
Sbjct: 642 LDLIAGGARALSWEREGYRLMSVGSAVGAAAGVGGDAGAQGIVAFDFLRRARSNLSSSLLSLQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYVAVAGSRGFAVYSRPTNRWRLFGNIEQ 778
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A4D9CZK3_9STRA (RIC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK3_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.020e-15 Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 109 IVAFDFFRRAR-SNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE 396
IV ++ R AR + A L LQG + +A ++ +PW+ ++L W + V P Y + N P+ V+ S +G +AVAG RGLA+YSRP RWRLFGN+ +
Sbjct: 498 IVRYEMLRWARHAAFAHTALCLQGVNTLAFLEQRPWNPRLLSWAHVTVPPAY-SVNVPVTLVAQSPSGQQLAVAGKRGLALYSRPQRRWRLFGNVHQ 593
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A1Q3DCI7_CEPFO (RIC1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DCI7_CEPFO) HSP 1 Score: 65.5 bits (158), Expect = 8.900e-10 Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 1
Query: 22 GARALTWGSDGYRLVSVGAEVGGTGSVQGIVAFDF----FRRARSNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
G + W GYRL ++ S + I+AF F R S + + G DR+ +V S+ LL LPV Y++ N P++HVS S+ G ++AVAG GL +Y +WR+FG++
Sbjct: 375 GTSVMQWDEFGYRLYAIEER-----SSERILAFSFGKCCLNRGVSGMTYVRQVIFGEDRLLVVQSEDTDELKLLHLNLPV--SYISQNWPVQHVSASKDGMYLAVAGLHGLILYDIRLKKWRVFGDV 494
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A7S1T8D7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8D7_9CHLO) HSP 1 Score: 61.2 bits (147), Expect = 1.780e-9 Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 160 VLALQGSDRIALVD-------SQPWSA------------QVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
V LQG+DR+ L+ S WS + L+ R L V Y+A+N PL H + S G +A AG RGLA+YSR + RWRLFG++
Sbjct: 21 VNVLQGADRLLLITESQDAAASSSWSQWNVGGQETNHIPEDLVVRHLRVPSAYMASNWPLVHAAVSADGYDIAAAGTRGLALYSRRSGRWRLFGDV 116
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A2V0P0B4_9CHLO (RIC1 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0B4_9CHLO) HSP 1 Score: 64.3 bits (155), Expect = 2.310e-9 Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 241 LPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
+P+ YLAAN PL H + S +G VAV+G RGLAVYSR T RWRLFGN+
Sbjct: 610 VPLPASYLAANWPLVHAAASPSGGDVAVSGRRGLAVYSRRTERWRLFGNV 659
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: L8HHF1_ACACA (RIC1 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHF1_ACACA) HSP 1 Score: 63.2 bits (152), Expect = 5.800e-9 Identity = 41/125 (32.80%), Postives = 59/125 (47.20%), Query Frame = 1
Query: 22 GARALTWGSDGYRLVSVGAEVGGTGSVQGIVAFDFFRRARSNLASAVLALQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNIRE 396
G +L+WG +GYRL T S G +F + L L G + L + + + W+ + V Y+ N P+ HV+ S VAVAG RG+A+YS +RWRLFG+ E
Sbjct: 378 GIASLSWGREGYRLFLTSPPDDSTASPAGFEQINFA------MEEERLVLWGEAELLLYCPHELN-ETMKWQRIQVPQTYMTDNWPIMHVAVSPESGDVAVAGRRGVAIYSAAVHRWRLFGDRSE 495
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A250X4W9_9CHLO (RIC1 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4W9_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 5.820e-9 Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 172 QGSDRIALVDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
QGS + + +Q A + + + PV Y+ N PL H S S G H+AVAG RGLA+YSR N+WRLFG++
Sbjct: 576 QGSPAGSGMPNQQQGADLTVSHI-PVPLSYIGPNWPLLHTSVSTNGLHIAVAGLRGLALYSRAANKWRLFGDV 647
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A8J4C0E2_9CHLO (RIC1 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C0E2_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 1.080e-8 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 241 LPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
LPV Y++AN PL+ + S +GT +AVAG GLAVY+RP+ RWRLFG+I
Sbjct: 561 LPVPHSYVSANWPLQRSAISASGTDIAVAGRNGLAVYNRPSERWRLFGDI 610
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A1I8MER0_MUSDO (Protein RIC1 homolog n=2 Tax=Musca domestica TaxID=7370 RepID=A0A1I8MER0_MUSDO) HSP 1 Score: 60.1 bits (144), Expect = 6.910e-8 Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 196 VDSQPWSAQVLLWRVLPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGN 387
VD A+ W VL + Y+A N P+R+ + G H+AVAG GLA YS PT +W+LFGN
Sbjct: 477 VDISSILAESKYWTVLQLPQTYVATNWPIRYSAIDAEGVHIAVAGRTGLAHYSMPTKKWKLFGN 540
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Match: A0A0D2LPC2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LPC2_9CHLO) HSP 1 Score: 58.9 bits (141), Expect = 8.560e-8 Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 241 LPVHPGYLAANAPLRHVSTSRAGTHVAVAGARGLAVYSRPTNRWRLFGNI 390
+P+ GY+AA PL H + S +G VAV+G RGLAVY R RWRLFG++
Sbjct: 82 VPLPAGYVAAGWPLVHAAASASGADVAVSGRRGLAVYGRHAERWRLFGDV 131 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig749.18723.1 >prot_F-serratus_M_contig749.18723.1 ID=prot_F-serratus_M_contig749.18723.1|Name=mRNA_F-serratus_M_contig749.18723.1|organism=Fucus serratus male|type=polypeptide|length=132bp MLDLVAGGARALTWGSDGYRLVSVGAEVGGTGSVQGIVAFDFFRRARSNLback to top mRNA from alignment at F-serratus_M_contig749:126689..127845+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig749.18723.1 ID=mRNA_F-serratus_M_contig749.18723.1|Name=mRNA_F-serratus_M_contig749.18723.1|organism=Fucus serratus male|type=mRNA|length=1157bp|location=Sequence derived from alignment at F-serratus_M_contig749:126689..127845+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig749:126689..127845+ >mRNA_F-serratus_M_contig749.18723.1 ID=mRNA_F-serratus_M_contig749.18723.1|Name=mRNA_F-serratus_M_contig749.18723.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig749:126689..127845+ (Fucus serratus male)back to top |