mRNA_F-serratus_M_contig749.18722.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig749.18722.1
Unique Name	mRNA_F-serratus_M_contig749.18722.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig749.18722.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 5.230e-72
Identity = 161/302 (53.31%), Postives = 193/302 (63.91%), Query Frame = 1

Query:    1 SFFMGTLSKNCCWLRNIAVTERGQGRAKTEAASPAVTAPSDHEPKHDHSDLDAKQISRGWGWRLLGTGRHVVAAAATTAATDSVSASTSAPSSL--SGRRNGPQGIIEASPPVVAD-AVTGAMCVEFSPKG-LMSIGIVDGTVLLTRVERYTTGLRSRHKLHISNNMLHKSDSYKLEASLAKET--------DL-EGVGVAGETDYKDARPPPSPSLGREGSMSSLWGVEVHHLYCLSLSSLLGPG---GPREEALGSAGRVLSMCFSADGWALAVGHERALTVWSTEDGTRLVCTTSKNSD 858
            SFF+G LSK  CWLRNIAV +R +  A   +A+ A   P+   P    ++ D      GWGWRLLGTGR+ VAAA      D++S+  S    +  SG                 D A TGA+ VEFS KG LM++ + DGTVLL RVERYT+G+R+RHKL ISN+MLH+SDS++LE  LA ET        D+ EG G  G T   DAR   + +  REG+MSSLWGVEVHHL CLSL   LGPG   G  E  LG AGRVLS+CFSADG ALAVGHE ALTVWSTEDGTRLVCTT+++ D
Sbjct:  295 SFFLGKLSKTTCWLRNIAVADRSRATAAPPSAA-AGRKPNSAAPPSFLANADGDNQEIGWGWRLLGTGRNAVAAAV-----DALSSPRSNTDGVFFSGGDGXXXXXXXXXXXESGDTAGTGAVGVEFSAKGGLMAVALADGTVLLARVERYTSGVRARHKLQISNSMLHRSDSHRLEDYLADETLRAEQGLGDVSEGDGKGGVTSPPDAR---TRTFSREGTMSSLWGVEVHHLNCLSLDPWLGPGDGGGGGESLLGPAGRVLSLCFSADGGALAVGHEGALTVWSTEDGTRLVCTTTESRD 587

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BLAST of mRNA_F-serratus_M_contig749.18722.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.830e-21
Identity = 69/187 (36.90%), Postives = 105/187 (56.15%), Query Frame = 1

Query:  370 FSPKG-LMSIGIVDGTVLLTRVERYTTGLRSRHKLHISNNMLHKSDSYKLE----------ASLAKET-DLEG--VGVAGETDYKDARP-----PPSPSLGREGSMSSLWGVEVHHLYCLSLSSLLGPGGPREEALGSAGRVLSMCFSADGWALAVGHERALTVWSTEDGTRLVCTTSKNSDTGDQG 873
            FS KG L+++ + DG+VLL+RVER+T+G R+   L + + + ++ +S++L+          A LA  T D+ G   G+ G   ++   P     P +P   ++  +++L GVE+H L+ LSL   L  GG           V  +CFS DG ALAVGHE AL +WST+DGTRL C+ +  +  G  G
Sbjct:  162 FSGKGGLLAVALGDGSVLLSRVERFTSGARAGDGLRVMSGLENRRNSFRLDPAERLDPADAAELAAATLDIAGGAEGLGGSGSFQSDVPGGGHAPDTPRSAQQRGIATLAGVEIHQLHSLSLGPYLAAGG-----------VTCLCFSDDGHALAVGHEGALALWSTDDGTRLSCSATGGAGVGGSG 337

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig749.18722.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig749.18722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LB77_ECTSI	5.230e-72	53.31	SHR-BD domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A835YSR2_9STRA	3.830e-21	36.90	RIC1 domain-containing protein n=1 Tax=Tribonema m...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig749	contig	F-serratus_M_contig749:124562..126491 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	253.4
Seed ortholog evalue	1.2e-64
Seed eggNOG ortholog	2880.D8LB77
KEGG ko	ko:K20476
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Rab guanyl-nucleotide exchange factor activity
EggNOG OGs	KOG2006@1,KOG2006@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Exons	4
Model size	873
Cds size	864
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig749.18722.1	prot_F-serratus_M_contig749.18722.1	Fucus serratus male	polypeptide	F-serratus_M_contig749 124571..126491 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932255.77445-UTR-F-serratus_M_contig749:124561..124570	1622932255.77445-UTR-F-serratus_M_contig749:124561..124570	Fucus serratus male	UTR	F-serratus_M_contig749 124562..124570 +
1690964220.8266993-UTR-F-serratus_M_contig749:124561..124570	1690964220.8266993-UTR-F-serratus_M_contig749:124561..124570	Fucus serratus male	UTR	F-serratus_M_contig749 124562..124570 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932255.7918313-CDS-F-serratus_M_contig749:124570..125016	1622932255.7918313-CDS-F-serratus_M_contig749:124570..125016	Fucus serratus male	CDS	F-serratus_M_contig749 124571..125016 +
1690964220.8399024-CDS-F-serratus_M_contig749:124570..125016	1690964220.8399024-CDS-F-serratus_M_contig749:124570..125016	Fucus serratus male	CDS	F-serratus_M_contig749 124571..125016 +
1622932255.8170044-CDS-F-serratus_M_contig749:125234..125362	1622932255.8170044-CDS-F-serratus_M_contig749:125234..125362	Fucus serratus male	CDS	F-serratus_M_contig749 125235..125362 +
1690964220.8506603-CDS-F-serratus_M_contig749:125234..125362	1690964220.8506603-CDS-F-serratus_M_contig749:125234..125362	Fucus serratus male	CDS	F-serratus_M_contig749 125235..125362 +
1622932255.8342826-CDS-F-serratus_M_contig749:125791..125943	1622932255.8342826-CDS-F-serratus_M_contig749:125791..125943	Fucus serratus male	CDS	F-serratus_M_contig749 125792..125943 +
1690964220.861314-CDS-F-serratus_M_contig749:125791..125943	1690964220.861314-CDS-F-serratus_M_contig749:125791..125943	Fucus serratus male	CDS	F-serratus_M_contig749 125792..125943 +
1622932255.8514283-CDS-F-serratus_M_contig749:126353..126491	1622932255.8514283-CDS-F-serratus_M_contig749:126353..126491	Fucus serratus male	CDS	F-serratus_M_contig749 126354..126491 +
1690964220.8812315-CDS-F-serratus_M_contig749:126353..126491	1690964220.8812315-CDS-F-serratus_M_contig749:126353..126491	Fucus serratus male	CDS	F-serratus_M_contig749 126354..126491 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig749:124562..126491+
coding sequence from alignment at F-serratus_M_contig749:124562..126491+

protein sequence of mRNA_F-serratus_M_contig749.18722.1

>prot_F-serratus_M_contig749.18722.1 ID=prot_F-serratus_M_contig749.18722.1|Name=mRNA_F-serratus_M_contig749.18722.1|organism=Fucus serratus male|type=polypeptide|length=288bp
MGTLSKNCCWLRNIAVTERGQGRAKTEAASPAVTAPSDHEPKHDHSDLDA
KQISRGWGWRLLGTGRHVVAAAATTAATDSVSASTSAPSSLSGRRNGPQG
IIEASPPVVADAVTGAMCVEFSPKGLMSIGIVDGTVLLTRVERYTTGLRS
RHKLHISNNMLHKSDSYKLEASLAKETDLEGVGVAGETDYKDARPPPSPS
LGREGSMSSLWGVEVHHLYCLSLSSLLGPGGPREEALGSAGRVLSMCFSA
DGWALAVGHERALTVWSTEDGTRLVCTTSKNSDTGDQG

mRNA from alignment at F-serratus_M_contig749:124562..126491+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig749.18722.1 ID=mRNA_F-serratus_M_contig749.18722.1|Name=mRNA_F-serratus_M_contig749.18722.1|organism=Fucus serratus male|type=mRNA|length=1930bp|location=Sequence derived from alignment at F-serratus_M_contig749:124562..126491+ (Fucus serratus male)
AGTTTTTTCATGGGCACGCTGTCCAAGAACTGTTGCTGGCTGCGGAACAT
TGCCGTGACGGAGCGAGGCCAAGGCCGCGCGAAAACGGAGGCGGCGTCGC
CAGCGGTGACCGCTCCCAGCGATCACGAACCGAAACACGATCACTCGGAC
TTGGACGCCAAGCAGATAAGCCGAGGCTGGGGGTGGAGACTGCTGGGCAC
GGGGCGTCATGTTGTGGCGGCCGCGGCAACGACAGCAGCGACTGACTCGG
TGTCAGCTTCAACGTCCGCCCCTTCCTCGCTCTCCGGAAGGCGTAACGGA
CCCCAGGGAATCATCGAGGCGTCGCCGCCTGTTGTAGCTGATGCCGTCAC
GGGAGCGATGTGCGTGGAGTTCAGCCCGAAGGGTCTCATGTCGATTGGCA
TCGTGGACGGGACGGTACTGCTTACCAGGGTCGAGCGCTACACGACCGGT
CTAAGGTGTGATGACATCGAGAGCGAGTTTCTAGGAGGAGGGAAACATTA
TTTGACGCTTAGAATAAGAGAGAGGCTTAAAAGAGAGGTCAGCATGGATT
AGCTGGATGGCCTGAGCAACGCGAACTGCCAACACTTGATTGATTCCTTT
CCCCCTTCCCGCCTCGACCACCTTGTGTCAAACGTCGTGGCATGGCATGG
CGTGGCATCCTGCGCGAAAACAGATCCCGCCACAAGCTTCACATCTCGAA
CAACATGCTCCATAAGTCGGACAGCTACAAGCTCGAAGCAAGCTTGGCAA
AAGAGACGGATTTGGAAGGCGTGGGCGTTGCAGGAGAGACCGACTATAAA
GGTCAGGGATTCCATCCGGGGAGAAGGGTTGGGTTTTAGTAGCGCCCGCT
CCAGCGTTTGGTGTGCCTCGTAGAGCCCGTTGCACCTCTCGTAGAGCCCG
TGCAATCGCCAACGAGGGGGGTCGCTCTCCGCCGCTCACGACTAGAGAAA
AAGTGCCCACGACGAAGGCGATTTACTTTTCGTGTGAGGCAAGTTGCTTC
GTACGGGTGGTTCTCGCGCGAACCGCCCCTTCCCCGAGCCAAGATAGAGC
CCTTAAAAAGATACTATCATTGTATGCACACTCCGTATAGAGCTAATTGT
GTGAATATTAATATACATGAGTATGCACGACACGGAATGGAAGCAGCCCC
TGAACGACCGTCGGCGCTCCCAAAAAAAATATGATAACGAGTACGTGTCC
TCGTGTGTGTGCGTAACGAACGCGCCGTAGACGCGCGACCGCCGCCATCG
CCATCGCTCGGGAGGGAGGGATCGATGTCGTCGCTGTGGGGTGTTGAGGT
CCACCACCTGTACTGCCTGTCGCTGAGCTCGTTGCTCGGGCCGGGAGGCC
CCAGGGAAGAGGCGCTGGGGTCGGCGGGGAGGGTGAGGAACTCCGTTTTT
CCACGCGCCTTTGCGCGTCCTGTCTGTCTCTCGCTACTGTCGTGGTGCAA
TCGAAACGAATGGCGCCAATCTGTAAAGCTGCGTTATTGGGATTCGTGGC
AGGTGTTGTGAGGGAGTTGCTTGGTGTTGGGGATGACGGTAGCAATGTGA
TATTCTTCGAAGGAATGAAGTGGTTTTGGAAGACTGGCTCGACCACCGGC
CGGTTGTGTGTCGTTCTTCTTACTTTAGATACTGCACTGCCGGCCAGGAC
CCCGTGCGTGGATGGTCATTCAACCGAAACTTGAGATACGACCGCAGACG
AAAACGACCGCGCGCGCCCGGCTAAGAGTTAACGTGTCCTCCTCCTCCCC
GCCAATATCCACTCCCACACACACGCGTTGCGGTGGCGACAGGTGCTGTC
TATGTGTTTCTCCGCCGACGGCTGGGCGCTCGCGGTCGGACATGAGCGCG
CCCTGACCGTGTGGAGCACTGAGGACGGGACACGCCTGGTCTGCACCACG
TCAAAAAACTCCGACACGGGCGATCAAGGC

Coding sequence (CDS) from alignment at F-serratus_M_contig749:124562..126491+

>mRNA_F-serratus_M_contig749.18722.1 ID=mRNA_F-serratus_M_contig749.18722.1|Name=mRNA_F-serratus_M_contig749.18722.1|organism=Fucus serratus male|type=CDS|length=1728bp|location=Sequence derived from alignment at F-serratus_M_contig749:124562..126491+ (Fucus serratus male)
ATGGGCACGCTGTCCAAGAACTGTTGCTGGCTGCGGAACATTGCCGTGAC
GGAGCGAGGCCAAGGCCGCGCGAAAACGGAGGCGGCGTCGCCAGCGGTGA
CCGCTCCCAGCGATCACGAACCGAAACACGATCACTCGGACTTGGACGCC
AAGCAGATAAGCCGAGGCTGGGGGTGGAGACTGCTGGGCACGGGGCGTCA
TGTTGTGGCGGCCGCGGCAACGACAGCAGCGACTGACTCGGTGTCAGCTT
CAACGTCCGCCCCTTCCTCGCTCTCCGGAAGGCGTAACGGACCCCAGGGA
ATCATCGAGGCGTCGCCGCCTGTTGTAGCTGATGCCGTCACGGGAGCGAT
GTGCGTGGAGTTCAGCCCGAAGGGTCTCATGTCGATTGGCATCGTGGACG
GGACGGTACTGCTTACCAGGGTCGAGCGCTACACGACCGGTCTAAGATGG
GCACGCTGTCCAAGAACTGTTGCTGGCTGCGGAACATTGCCGTGACGGAG
CGAGGCCAAGGCCGCGCGAAAACGGAGGCGGCGTCGCCAGCGGTGACCGC
TCCCAGCGATCACGAACCGAAACACGATCACTCGGACTTGGACGCCAAGC
AGATAAGCCGAGGCTGGGGGTGGAGACTGCTGGGCACGGGGCGTCATGTT
GTGGCGGCCGCGGCAACGACAGCAGCGACTGACTCGGTGTCAGCTTCAAC
GTCCGCCCCTTCCTCGCTCTCCGGAAGGCGTAACGGACCCCAGGGAATCA
TCGAGGCGTCGCCGCCTGTTGTAGCTGATGCCGTCACGGGAGCGATGTGC
GTGGAGTTCAGCCCGAAGGGTCTCATGTCGATTGGCATCGTGGACGGGAC
GGTACTGCTTACCAGGGTCGAGCGCTACACGACCGGTCTAAGATCCCGCC
ACAAGCTTCACATCTCGAACAACATGCTCCATAAGTCGGACAGCTACAAG
CTCGAAGCAAGCTTGGCAAAAGAGACGGATTTGGAAGGCGTGGGCGTTGC
AGGAGAGACCGACTATAAAGATCCCGCCACAAGCTTCACATCTCGAACAA
CATGCTCCATAAGTCGGACAGCTACAAGCTCGAAGCAAGCTTGGCAAAAG
AGACGGATTTGGAAGGCGTGGGCGTTGCAGGAGAGACCGACTATAAAGAC
GCGCGACCGCCGCCATCGCCATCGCTCGGGAGGGAGGGATCGATGTCGTC
GCTGTGGGGTGTTGAGGTCCACCACCTGTACTGCCTGTCGCTGAGCTCGT
TGCTCGGGCCGGGAGGCCCCAGGGAAGAGGCGCTGGGGTCGGCGGGGAGG
ACGCGCGACCGCCGCCATCGCCATCGCTCGGGAGGGAGGGATCGATGTCG
TCGCTGTGGGGTGTTGAGGTCCACCACCTGTACTGCCTGTCGCTGAGCTC
GTTGCTCGGGCCGGGAGGCCCCAGGGAAGAGGCGCTGGGGTCGGCGGGGA
GGGTGCTGTCTATGTGTTTCTCCGCCGACGGCTGGGCGCTCGCGGTCGGA
CATGAGCGCGCCCTGACCGTGTGGAGCACTGAGGACGGGACACGCCTGGT
CTGCACCACGTCAAAAAACTCCGACACGGGCGATCAAGGCGTGCTGTCTA
TGTGTTTCTCCGCCGACGGCTGGGCGCTCGCGGTCGGACATGAGCGCGCC
CTGACCGTGTGGAGCACTGAGGACGGGACACGCCTGGTCTGCACCACGTC
AAAAAACTCCGACACGGGCGATCAAGGC