mRNA_F-serratus_M_contig7481.18718.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7481.18718.1
Unique NamemRNA_F-serratus_M_contig7481.18718.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 178 bits (452), Expect = 5.310e-51
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGP 255
            MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGP
Sbjct:  290 MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGP 374          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 170 bits (431), Expect = 1.230e-48
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1
Query:    1 MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGP 255
            M GFPNLDAVSIGSDGTVDP SQLFRATFVGVETGPF+SQLLVNSFTID+ITVEPKQETFAPD+NYMVDFDEWLNIQNGGPPAGP
Sbjct:  171 MEGFPNLDAVSIGSDGTVDPLSQLFRATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPDVNYMVDFDEWLNIQNGGPPAGP 255          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 113 bits (282), Expect = 2.540e-27
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGP 255
            M GF +L+ V++G DG+ DP +QLFR++ VGVE GP VSQLLVN+FTID+ITVE KQ TFAP  +YM +FDEWL+IQNG  P  P
Sbjct:  219 MPGFADLNFVAVGPDGSPDPLTQLFRSSAVGVEIGPHVSQLLVNNFTIDSITVEAKQNTFAPGEDYMAEFDEWLSIQNGEFPVEP 303          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.960e-25
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPP 246
            M GF N+  V++  DG  DP SQLFR +  GVETGPF+SQLLV  FTID+ITV P Q+TF P  +YM D+DEWL IQNGG P
Sbjct:  225 MPGFQNMVGVAVDRDGRADPQSQLFRTSAFGVETGPFISQLLVQDFTIDSITVAPIQKTFEPGADYMADYDEWLFIQNGGVP 306          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.970e-23
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 MGGFPNLDAVSIGSDGT-VDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGPP 246
            M GF ++  V++  +    DP SQLFR++  GVETGPF+SQLLV  FTID+ITV P Q+TFAP  +YM D+DEWL+IQNGG P
Sbjct:  225 MPGFADIVGVAVDPETRRADPQSQLFRSSAFGVETGPFISQLLVKDFTIDSITVTPMQKTFAPGADYMTDYDEWLSIQNGGSP 307          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: A0ZCI9_NODSP (Uncharacterized protein n=2 Tax=Nodularia spumigena TaxID=70799 RepID=A0ZCI9_NODSP)

HSP 1 Score: 70.9 bits (172), Expect = 2.000e-12
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   16 NLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGG 240
            + D   +G+  T +    LFR  + G   GP++SQ L+      ++T+  +Q+T  PD+NY+ D+DEWLN+QNGG
Sbjct:  181 DFDGPKVGASVTPET---LFRGNYAGDLVGPYISQFLLKDIPYGSLTISQRQKTVQPDINYLTDYDEWLNVQNGG 252          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: A0A7S4V9V9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9V9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.270e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   49 TVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGGP 243
            ++DP ++LFR    G   GP VSQ L +   ID I ++PK  T AP+ +Y+ DF EW  +QNG P
Sbjct:   87 SIDPQTELFRLDIFGTTRGPIVSQFLYHDIYIDGIPIKPKHRTCAPNTDYLTDFVEWREVQNGKP 151          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: A0A2R5FTI7_NOSCO (Twin-arginine translocation pathway signal n=1 Tax=Nostoc commune NIES-4072 TaxID=2005467 RepID=A0A2R5FTI7_NOSCO)

HSP 1 Score: 67.4 bits (163), Expect = 2.970e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   43 DGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGG 240
            DG + P + LFR    G   GP++SQLL+      ++T+  KQ+T   D+NY+ D++ WLNIQNGG
Sbjct:  188 DGCITP-ATLFRGIHTGDLVGPYISQLLLKDIPFGSLTISQKQKTVQRDINYLTDYETWLNIQNGG 252          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: UPI00187FF134 (vanadium-dependent haloperoxidase n=1 Tax=unclassified Nodularia TaxID=2656917 RepID=UPI00187FF134)

HSP 1 Score: 67.0 bits (162), Expect = 4.530e-11
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   70 LFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNG 237
            LFR  + G   GP++SQ L+      ++T+  +Q+T  PD+NY+ D+D+WLN+QNG
Sbjct:  199 LFRGNYAGDLVGPYISQFLLKDIPYGSLTISQRQKTVLPDINYLTDYDDWLNVQNG 254          
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Match: UPI0019EFA36E (Vanadium-dependent haloperoxidase n=1 Tax=Nostocales cyanobacterium LEGE 11386 TaxID=1828825 RepID=UPI0019EFA36E)

HSP 1 Score: 65.5 bits (158), Expect = 1.580e-10
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   43 DGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDFDEWLNIQNGG 240
            +G + P   LFR  + G   GP++SQ L+      ++T+  +QET   +++YM ++DEWLN+QNGG
Sbjct:  206 EGKITP-ETLFRGNYAGDLVGPYISQFLLKDIPYGSLTISQRQETVVANVDYMTEYDEWLNVQNGG 270          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7481.18718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
O82433_FUCDI5.310e-51100.00Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO1.230e-4894.12Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
A0A3G3BM28_SACJA2.540e-2763.53Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
B7ZGM6_9PHAE1.960e-2562.20Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE2.970e-2359.04Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0ZCI9_NODSP2.000e-1238.67Uncharacterized protein n=2 Tax=Nodularia spumigen... [more]
A0A7S4V9V9_9STRA1.270e-1144.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2R5FTI7_NOSCO2.970e-1143.94Twin-arginine translocation pathway signal n=1 Tax... [more]
UPI00187FF1344.530e-1142.86vanadium-dependent haloperoxidase n=1 Tax=unclassi... [more]
UPI0019EFA36E1.580e-1039.39Vanadium-dependent haloperoxidase n=1 Tax=Nostocal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7481contigF-serratus_M_contig7481:5548..6362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size257
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7481.18718.1prot_F-serratus_M_contig7481.18718.1Fucus serratus malepolypeptideF-serratus_M_contig7481 5548..6362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932253.6475618-CDS-F-serratus_M_contig7481:5547..55711622932253.6475618-CDS-F-serratus_M_contig7481:5547..5571Fucus serratus maleCDSF-serratus_M_contig7481 5548..5571 -
1690964219.8200328-CDS-F-serratus_M_contig7481:5547..55711690964219.8200328-CDS-F-serratus_M_contig7481:5547..5571Fucus serratus maleCDSF-serratus_M_contig7481 5548..5571 -
1622932253.6730092-CDS-F-serratus_M_contig7481:5895..60061622932253.6730092-CDS-F-serratus_M_contig7481:5895..6006Fucus serratus maleCDSF-serratus_M_contig7481 5896..6006 -
1690964219.8372338-CDS-F-serratus_M_contig7481:5895..60061690964219.8372338-CDS-F-serratus_M_contig7481:5895..6006Fucus serratus maleCDSF-serratus_M_contig7481 5896..6006 -
1622932253.6958466-CDS-F-serratus_M_contig7481:6242..63621622932253.6958466-CDS-F-serratus_M_contig7481:6242..6362Fucus serratus maleCDSF-serratus_M_contig7481 6243..6362 -
1690964219.8558257-CDS-F-serratus_M_contig7481:6242..63621690964219.8558257-CDS-F-serratus_M_contig7481:6242..6362Fucus serratus maleCDSF-serratus_M_contig7481 6243..6362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7481.18718.1

>prot_F-serratus_M_contig7481.18718.1 ID=prot_F-serratus_M_contig7481.18718.1|Name=mRNA_F-serratus_M_contig7481.18718.1|organism=Fucus serratus male|type=polypeptide|length=85bp
MGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDA
ITVEPKQETFAPDLNYMVDFDEWLNIQNGGPPAGP
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mRNA from alignment at F-serratus_M_contig7481:5548..6362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7481.18718.1 ID=mRNA_F-serratus_M_contig7481.18718.1|Name=mRNA_F-serratus_M_contig7481.18718.1|organism=Fucus serratus male|type=mRNA|length=815bp|location=Sequence derived from alignment at F-serratus_M_contig7481:5548..6362- (Fucus serratus male)
ATGGGAGGCTTCCCAAATCTGGACGCCGTGTCGATAGGGTCCGATGGTAC GGTGGACCCGTTCTCCCAGCTCTTCCGAGCGACCTTCGTTGGTGTTGAAA CGGGGCCCTTCGTCTCTCAGGTGTGGTGATGCACTGCTCAGGAGACTGAC ACTCATCTTTTGTTTAGTTATAACCACAAAAACGGCGCACTTTCTTCTCG GTAGGGCACCTAGGTGTATAGTAAGCAGTGCTCAGCCCCATATCTTTACT ACAAATTACTCTTTTTATGATTGTGGACTGGCTACTAACATTTTTCGATG CGGGCTTCTCCCCTGTTCATTTCTGCCCGACTCACACGTCGTCGCTTGTT AAACAGCTGCTCGTGAACAGCTTCACCATCGACGCTATTACGGTCGAACC GAAGCAGGAGACATTCGCCCCCGACTTGAACTATATGGTCGATTTTGACG AATGGCTGAACATTCAGGTAGGTCCAGTCCCACCGTCTGGTCTTTGAACG AGCTCTTGATGAGACGCGGCTTATTCTAAAGTTTTCTTCTTCAACTAGAA TCCGCTCCCACTACGCCCTGTAAACGGCGTTTTTGGGGTCCAGAACGGTG TTTGAAGCCTTTTGGCTTACATAGCATTTCGGCTTTGGTCAGTGCAGAGT TCACAGTACACGACGACGATAACACAATACGTATTAATATGGCTTATCTG TCACTATATGACCTTCAAGTAGTATCATATATATTTGTGTTGACTGGTCC TTGCTTGCCCTTTTTTGTCGTTGTCTTGCTGTTTCGTGTAGAATGGTGGA CCCCCGGCCGGCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7481:5548..6362-

>mRNA_F-serratus_M_contig7481.18718.1 ID=mRNA_F-serratus_M_contig7481.18718.1|Name=mRNA_F-serratus_M_contig7481.18718.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig7481:5548..6362- (Fucus serratus male)
ATGGGAGGCTTCCCAAATCTGGACGCCGTGTCGATAGGGTCCGATGGTAC
GGTGGACCCGTTCTCCCAGCTCTTCCGAGCGACCTTCGTTGGTGTTGAAA
CGGGGCCCTTCGTCTCTCAGATGGGAGGCTTCCCAAATCTGGACGCCGTG
TCGATAGGGTCCGATGGTACGGTGGACCCGTTCTCCCAGCTCTTCCGAGC
GACCTTCGTTGGTGTTGAAACGGGGCCCTTCGTCTCTCAGCTGCTCGTGA
ACAGCTTCACCATCGACGCTATTACGGTCGAACCGAAGCAGGAGACATTC
GCCCCCGACTTGAACTATATGGTCGATTTTGACGAATGGCTGAACATTCA
GCTGCTCGTGAACAGCTTCACCATCGACGCTATTACGGTCGAACCGAAGC
AGGAGACATTCGCCCCCGACTTGAACTATATGGTCGATTTTGACGAATGG
CTGAACATTCAGAATGGTGGACCCCCGGCCGGCCCCAATGGTGGACCCCC
GGCCGGCCCC
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