mRNA_F-serratus_M_contig7481.18717.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7481.18717.1
Unique NamemRNA_F-serratus_M_contig7481.18717.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 179 bits (453), Expect = 4.360e-47
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 EGEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDICSGLVYTGVVDCQA 276
            EGEINKLAVNVAFGRQML IHYRFDGIQGLLLGETITVRTLH ELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGD+CSGLVYTGV DCQA
Sbjct:  585 EGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDMCSGLVYTGVADCQA 676
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 163 bits (413), Expect = 4.510e-42
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 EGEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDICSGLVYTGVVDC 270
            EGEINKLAVNVAFGRQML IHYRFDGIQGLLLGETITVRTLH ELMTFAEE+TFEFRLFTGEVIKLFQDGTF+IDG  C GLVYTGV +C
Sbjct:  466 EGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTGVENC 555
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.400e-19
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 EGEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDICSGLVYTGVVDC 270
            EGEINKLAVNVAFGR M  +H+R D  QGLLLGE   VR L  E +TF E A +EF L +GE I+L  DGTF I+  +CSG  + G   C
Sbjct:  524 EGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVRILQQEAVTFPENAGYEFNLMSGETIRLETDGTFFINDRLCSGDAFMGADLC 613
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.480e-19
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 EGEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDICSGLVYTGVVDC 270
            EGEINKLAVNVA GR ML +H+R D   GLLLGET  VR L  E + + E A +EFRL +G+ I+L  DGTF ID  +CSG  + G   C
Sbjct:  535 EGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQEAVAYPENAGYEFRLMSGKTIRLETDGTFFIDDTLCSGDAFMGADLC 624
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: A0A0P1GKM0_9RHOB (PAP2 superfamily protein n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GKM0_9RHOB)

HSP 1 Score: 65.9 bits (159), Expect = 1.040e-8
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    1 EGEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDI 234
            EGE+NKLA N+A GR M  +HY  D  + L LGE I V  LH ++  + E  +   + F G+ I +  DG F ++ D+
Sbjct:  145 EGELNKLAANIAIGRDMAGVHYYSDYYESLRLGERIAVGILHEQMSNYNEPVSMYLKSFDGDRITIKTDGKFDVELDV 222
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: A0A7S2EQ98_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EQ98_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.760e-7
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 GEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDG 210
            GE+NKLA NVA GR    +H+R DG+ G+  GE + +  + +EL    E AT +F+ F GE + L + G
Sbjct:   87 GELNKLAHNVAMGRDFSGVHWRMDGVSGIRQGEEVAMNYIQNELDRQPECATRKFKSFDGEFVYLTKAG 155
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: A0A7S4V1Y5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V1Y5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.110e-6
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 GEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDG 210
            GE+NKLA NVA GR    +H+R DG+ G+  GE + +  + +EL    E AT +F+ F GE + L + G
Sbjct:  169 GELNKLAHNVAMGRDFSGVHWRMDGVSGIRQGEEVAMNYIQNELDRQPECATRKFKSFDGEFVYLTKAG 237
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: A0A521GU33_9BACT (Phosphoesterase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521GU33_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 4.690e-6
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    4 GEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKL 198
            GE+NK+A NVA GR M  IH+R DG++GL LGE + +  L  + +T+ E  +F    F G  I +
Sbjct:  423 GELNKVAANVASGRNMGGIHWRTDGVEGLKLGEAVAIGILEEQKLTYQEPHSFSLTKFDGTRITI 487
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BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: V4RQT0_9HYPH (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Lutibaculum baratangense AMV1 TaxID=631454 RepID=V4RQT0_9HYPH)

HSP 1 Score: 58.2 bits (139), Expect = 5.730e-6
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:    1 EGEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKL 198
            EGE+NKLA NVA GR M  +HY  D    + LGE + V  L  +++T+ EE    F  F  + I++
Sbjct:  189 EGELNKLAANVAIGRNMAGVHYYSDYYDSVRLGERVAVGILEEQMLTYGEEVRMRFHSFDSDRIEI 254
[Close]
BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Match: A0A7S4QKK9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QKK9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.300e-6
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 GEINKLAVNVAFGRQMLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKLFQDG 210
            GE+NKLA NVA GR    +H+R D + G+ LGE + +  + +EL    E A+ +F+ F G+ + + + G
Sbjct:   79 GELNKLAHNVAMGRDFSGVHWRVDDVNGIRLGEKVAIHYMQNELDRQPECASRKFKSFDGDFVYITKSG 147
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7481.18717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O82433_FUCDI4.360e-4795.65Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO4.510e-4290.00Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
B7ZGM6_9PHAE1.400e-1956.67Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE3.480e-1955.56Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A0P1GKM0_9RHOB1.040e-839.74PAP2 superfamily protein n=1 Tax=Tropicibacter nap... [more]
A0A7S2EQ98_9STRA9.760e-742.03Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4V1Y5_9STRA3.110e-642.03Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A521GU33_9BACT4.690e-643.08Phosphoesterase n=1 Tax=Planctomycetes bacterium T... [more]
V4RQT0_9HYPH5.730e-640.91Vanadium-dependent bromoperoxidase 2 n=1 Tax=Lutib... [more]
A0A7S4QKK9_9STRA7.300e-637.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7481contigF-serratus_M_contig7481:1916..3772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1054
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7481.18717.1prot_F-serratus_M_contig7481.18717.1Fucus serratus malepolypeptideF-serratus_M_contig7481 2691..3096 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932253.4768057-UTR-F-serratus_M_contig7481:1915..26901622932253.4768057-UTR-F-serratus_M_contig7481:1915..2690Fucus serratus maleUTRF-serratus_M_contig7481 1916..2690 -
1690964219.7380223-UTR-F-serratus_M_contig7481:1915..26901690964219.7380223-UTR-F-serratus_M_contig7481:1915..2690Fucus serratus maleUTRF-serratus_M_contig7481 1916..2690 -
1622932253.547981-UTR-F-serratus_M_contig7481:3096..31001622932253.547981-UTR-F-serratus_M_contig7481:3096..3100Fucus serratus maleUTRF-serratus_M_contig7481 3097..3100 -
1690964219.7795064-UTR-F-serratus_M_contig7481:3096..31001690964219.7795064-UTR-F-serratus_M_contig7481:3096..3100Fucus serratus maleUTRF-serratus_M_contig7481 3097..3100 -
1622932253.5921059-UTR-F-serratus_M_contig7481:3728..37721622932253.5921059-UTR-F-serratus_M_contig7481:3728..3772Fucus serratus maleUTRF-serratus_M_contig7481 3729..3772 -
1690964219.7941525-UTR-F-serratus_M_contig7481:3728..37721690964219.7941525-UTR-F-serratus_M_contig7481:3728..3772Fucus serratus maleUTRF-serratus_M_contig7481 3729..3772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932253.4920838-CDS-F-serratus_M_contig7481:2690..28401622932253.4920838-CDS-F-serratus_M_contig7481:2690..2840Fucus serratus maleCDSF-serratus_M_contig7481 2691..2840 -
1690964219.7561464-CDS-F-serratus_M_contig7481:2690..28401690964219.7561464-CDS-F-serratus_M_contig7481:2690..2840Fucus serratus maleCDSF-serratus_M_contig7481 2691..2840 -
1622932253.515679-CDS-F-serratus_M_contig7481:3015..30961622932253.515679-CDS-F-serratus_M_contig7481:3015..3096Fucus serratus maleCDSF-serratus_M_contig7481 3016..3096 -
1690964219.7678962-CDS-F-serratus_M_contig7481:3015..30961690964219.7678962-CDS-F-serratus_M_contig7481:3015..3096Fucus serratus maleCDSF-serratus_M_contig7481 3016..3096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7481.18717.1

>prot_F-serratus_M_contig7481.18717.1 ID=prot_F-serratus_M_contig7481.18717.1|Name=mRNA_F-serratus_M_contig7481.18717.1|organism=Fucus serratus male|type=polypeptide|length=77bp
MLDIHYRFDGIQGLLLGETITVRTLHHELMTFAEEATFEFRLFTGEVIKL
FQDGTFSIDGDICSGLVYTGVVDCQA*
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mRNA from alignment at F-serratus_M_contig7481:1916..3772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7481.18717.1 ID=mRNA_F-serratus_M_contig7481.18717.1|Name=mRNA_F-serratus_M_contig7481.18717.1|organism=Fucus serratus male|type=mRNA|length=1857bp|location=Sequence derived from alignment at F-serratus_M_contig7481:1916..3772- (Fucus serratus male)
GAGGGAGAGATCAACAAGCTCGCGGTCAACGTCGCGTTTGGGAGGTAAAC
ATTATGGGGGGGCATGCAAGCTTCATACAAAACTGTTTAAACTATGCTAG
TCGAAGTTATACTTTGTGGAATTGAGTGTATGCTCCGTAACAGGCCTCGT
ACATTCCTCGGAGAGCTGGTTCGTATTGGGTAGCAAAGCGAGTTCATACA
AGCCACGGAATACATTGGAGGAGCGCTCCAAGATCACGTGTAACTTCGCA
TAGTCATCGCGATTCATATCGAGGTGTCGATACTCGGTTGGCTGTTCATC
GGTGGTCTCGTTTTCAGAGTCTAGAACTAACAGAAAAACCACGAGGCATA
TCAAACAAAGGCATGCACTGTAGCATGCACAACTCATTAACGGGAATGTC
GGCTAGTATATAAGGTATTATAGTTTATCTACATTATCACCTTGCTAGTA
GGTACTAGGGAAAAGAAGCCATAGGATATACTCAATCCATTCACCGTGCT
GGAGTAACCTCCGACAGGATCATGAACGCGCAGTAAATCGTTTCAGGTAG
AAAGAGCATATACAATACATCATGACTCCTATTGCAGATTGTCGTTGAAA
ACGTTTGCGTGGCCATTCGAGAGATGTTTGACTGTCAGGTGTCACGCTGT
TTCCGTTTTTTTTTTATTGCAGGCAGATGCTGGACATCCACTATCGCTTC
GACGGTATCCAAGGCCTACTTCTCGGAGAGACAATCACTGTACGAACACT
TCACCACGTAAGCATACTGTCAAGGTACAGGTCTAGCTCTGCCCAATGAT
TGTGGTCTGTCAATCCTTCGATAAATATGCCATAAACGCTGTCAGATTGA
ACTCTACGTCTGTACGGTCGTTGTGTGAAACGACCGCCCACCACTTCACG
CTTGCCTATTACTCGACCATCCTTCGACTCAGGAGCTGATGACGTTCGCC
GAGGAAGCCACCTTTGAATTCCGCTTATTCACCGGCGAGGTCATCAAACT
TTTCCAGGACGGGACATTCTCCATCGATGGAGATATATGTTCCGGTTTGG
TTTACACTGGCGTGGTGGACTGCCAGGCTTAGTTAGAAAATAATAGTTGT
AGGATGGTTAAAATGCACCCACAACCAAGTCGTCGAGTCACGTCGCCGGA
GCATCCTTCAGCGTAAAAGGAGAGTAACCTAGATGTTATAAAGGAGAACC
ACGGAGTACAATGCAGGTTCATTAACGATGTACATTAGATTGCAGTAAGT
GCGGCTAGAGAGGGATACGTCAAACGTGCTTGCCTGTGTATATGATACAT
TTTTCATGGAATACTAGAATGCGTTGACTTGGCTTCACCTTGAAATACCA
TGATCGCGTGGTGTGCTGCTTTCACCTGTCGGAGCGGTACGTAAGATGTG
CTTTCTACTGAGCCGTTCGTGTTTAGTCCATTCCGCGTGGCAGTGTAAAC
AAAGAGGATGTAGTCTCGCCCTCAGTTTGGAGAGTACCGTAGGTGGCAGG
ACGTATATCTCTGGTAGCGGTCTGTTACGAACTTCCACAAGGCCGTTTAC
GTTTGGTTGTTTAGTCGATGCCTCTTCGTTACTTGACCGATCCATTGAGA
CCACCTGTACCAGTGTGTTGTAAGTCATATTTGTCTCCTGTTATGGATCT
GTAGAACAGCTAGGTGTTGTTTTATACACAGGATGCTATAAAATAGGGAT
GTGATAATGGTATCGGTACTCATGAAACCGCAAAATGGCGATAGATATTC
ACCGGAACTGTCTCCTGATGCCAAATTTCATCTGACCTTTCGGACCTAAT
GCGTACAAGGAGGCTGGTATTCGAACGCCCTTCCCTTGAAACGAGGTACA
AAACCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7481:1916..3772-

>mRNA_F-serratus_M_contig7481.18717.1 ID=mRNA_F-serratus_M_contig7481.18717.1|Name=mRNA_F-serratus_M_contig7481.18717.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig7481:1916..3772- (Fucus serratus male)
ATGCTGGACATCCACTATCGCTTCGACGGTATCCAAGGCCTACTTCTCGG
AGAGACAATCACTGTACGAACACTTCACCACATGCTGGACATCCACTATC
GCTTCGACGGTATCCAAGGCCTACTTCTCGGAGAGACAATCACTGTACGA
ACACTTCACCACGAGCTGATGACGTTCGCCGAGGAAGCCACCTTTGAATT
CCGCTTATTCACCGGCGAGGTCATCAAACTTTTCCAGGACGGGACATTCT
CCATCGATGGAGATATATGTTCCGGTTTGGTTTACACTGGCGTGGTGGAC
TGCCAGGCTTAGGAGCTGATGACGTTCGCCGAGGAAGCCACCTTTGAATT
CCGCTTATTCACCGGCGAGGTCATCAAACTTTTCCAGGACGGGACATTCT
CCATCGATGGAGATATATGTTCCGGTTTGGTTTACACTGGCGTGGTGGAC
TGCCAGGCTTAG
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