mRNA_F-serratus_M_contig748.18711.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig748.18711.1
Unique NamemRNA_F-serratus_M_contig748.18711.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig748.18711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig748contigF-serratus_M_contig748:11952..12523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size572
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig748.18711.1prot_F-serratus_M_contig748.18711.1Fucus serratus malepolypeptideF-serratus_M_contig748 12059..12367 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932252.589114-UTR-F-serratus_M_contig748:11951..120581622932252.589114-UTR-F-serratus_M_contig748:11951..12058Fucus serratus maleUTRF-serratus_M_contig748 11952..12058 +
1690964219.3611152-UTR-F-serratus_M_contig748:11951..120581690964219.3611152-UTR-F-serratus_M_contig748:11951..12058Fucus serratus maleUTRF-serratus_M_contig748 11952..12058 +
1622932252.6789007-UTR-F-serratus_M_contig748:12367..125231622932252.6789007-UTR-F-serratus_M_contig748:12367..12523Fucus serratus maleUTRF-serratus_M_contig748 12368..12523 +
1690964219.3808339-UTR-F-serratus_M_contig748:12367..125231690964219.3808339-UTR-F-serratus_M_contig748:12367..12523Fucus serratus maleUTRF-serratus_M_contig748 12368..12523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932252.6266737-CDS-F-serratus_M_contig748:12058..123671622932252.6266737-CDS-F-serratus_M_contig748:12058..12367Fucus serratus maleCDSF-serratus_M_contig748 12059..12367 +
1690964219.3712132-CDS-F-serratus_M_contig748:12058..123671690964219.3712132-CDS-F-serratus_M_contig748:12058..12367Fucus serratus maleCDSF-serratus_M_contig748 12059..12367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig748.18711.1

>prot_F-serratus_M_contig748.18711.1 ID=prot_F-serratus_M_contig748.18711.1|Name=mRNA_F-serratus_M_contig748.18711.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MHIPLVVTKRYKGQRVASWRQPVNQTNRDTNRDKKSCDSTSNYTDEYQNG
SSNFLLYVESNLDRLGLLSPTHDQHSQQQTGQIMLQPVLINKFKFLKATH
CT*
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mRNA from alignment at F-serratus_M_contig748:11952..12523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig748.18711.1 ID=mRNA_F-serratus_M_contig748.18711.1|Name=mRNA_F-serratus_M_contig748.18711.1|organism=Fucus serratus male|type=mRNA|length=572bp|location=Sequence derived from alignment at F-serratus_M_contig748:11952..12523+ (Fucus serratus male)
GTTGAGATTGTTTAAAGAAAAAGTTGATTCTTCACACATTCAGCGTAGTG
TCCTTGCAACTGAAGAAACTAAGTTACACAGCAAGTCATCAGTTATATAC
TTATCAAATGCATATCCCGCTTGTGGTCACAAAGAGGTACAAAGGTCAAC
GGGTCGCATCATGGCGACAACCCGTTAATCAGACCAACAGGGACACAAAT
CGCGACAAAAAGTCGTGCGACTCTACAAGCAATTACACCGACGAATATCA
AAACGGTTCATCAAACTTCTTACTATATGTCGAGAGCAACCTCGATCGAC
TCGGGTTATTGTCGCCTACCCACGACCAGCATTCTCAGCAACAAACCGGA
CAAATTATGCTCCAACCAGTTTTGATCAACAAGTTCAAGTTTCTCAAGGC
CACGCATTGTACATAATTAAAGAAAGTTGAAATACAGAGGTCCATGATAG
TGGAGGCCTTGAGCTGGTGGGGCCGGCGCGCGAGCCAGCATCCAGCCGTC
CAAAGCGTTGTGCACCCCTGAAAAAGCCTCACGAATCTTGCCCGTTCGCC
GCTCCTTGTGGCCCTCGTAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig748:11952..12523+

>mRNA_F-serratus_M_contig748.18711.1 ID=mRNA_F-serratus_M_contig748.18711.1|Name=mRNA_F-serratus_M_contig748.18711.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig748:11952..12523+ (Fucus serratus male)
ATGCATATCCCGCTTGTGGTCACAAAGAGGTACAAAGGTCAACGGGTCGC
ATCATGGCGACAACCCGTTAATCAGACCAACAGGGACACAAATCGCGACA
AAAAGTCGTGCGACTCTACAAGCAATTACACCGACGAATATCAAAACGGT
TCATCAAACTTCTTACTATATGTCGAGAGCAACCTCGATCGACTCGGGTT
ATTGTCGCCTACCCACGACCAGCATTCTCAGCAACAAACCGGACAAATTA
TGCTCCAACCAGTTTTGATCAACAAGTTCAAGTTTCTCAAGGCCACGCAT
TGTACATAAATGCATATCCCGCTTGTGGTCACAAAGAGGTACAAAGGTCA
ACGGGTCGCATCATGGCGACAACCCGTTAATCAGACCAACAGGGACACAA
ATCGCGACAAAAAGTCGTGCGACTCTACAAGCAATTACACCGACGAATAT
CAAAACGGTTCATCAAACTTCTTACTATATGTCGAGAGCAACCTCGATCG
ACTCGGGTTATTGTCGCCTACCCACGACCAGCATTCTCAGCAACAAACCG
GACAAATTATGCTCCAACCAGTTTTGATCAACAAGTTCAAGTTTCTCAAG
GCCACGCATTGTACATAA
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