mRNA_F-serratus_M_contig7463.18698.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7463.18698.1
Unique NamemRNA_F-serratus_M_contig7463.18698.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7463.18698.1 vs. uniprot
Match: D8LC53_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC53_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.670e-9
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MMELLVRAGSNLNAQNVAGDAPLHKAALNGHVVAAGY 111
            M+ELL+RAGSN+NAQN+ GDAPLHKAALNG  ++A Y
Sbjct:   25 MLELLLRAGSNINAQNIVGDAPLHKAALNGRALSADY 61
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BLAST of mRNA_F-serratus_M_contig7463.18698.1 vs. uniprot
Match: A0A6H5J6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6H7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.670e-9
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MMELLVRAGSNLNAQNVAGDAPLHKAALNGHVVAAGY 111
            M+ELL+RAGSN+NAQN+ GDAPLHKAALNG  ++A Y
Sbjct:  107 MLELLLRAGSNINAQNIVGDAPLHKAALNGRALSADY 143
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7463.18698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC53_ECTSI6.670e-972.97Ankyrin domain protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5J6H7_9PHAE6.670e-972.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7463contigF-serratus_M_contig7463:16996..17136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog2880.D8LC53
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932249.3326972-CDS-F-serratus_M_contig7463:16995..171361622932249.3326972-CDS-F-serratus_M_contig7463:16995..17136Fucus serratus maleCDSF-serratus_M_contig7463 16996..17136 +
1690964217.7950628-CDS-F-serratus_M_contig7463:16995..171361690964217.7950628-CDS-F-serratus_M_contig7463:16995..17136Fucus serratus maleCDSF-serratus_M_contig7463 16996..17136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7463.18698.1prot_F-serratus_M_contig7463.18698.1Fucus serratus malepolypeptideF-serratus_M_contig7463 16996..17136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7463.18698.1

>prot_F-serratus_M_contig7463.18698.1 ID=prot_F-serratus_M_contig7463.18698.1|Name=mRNA_F-serratus_M_contig7463.18698.1|organism=Fucus serratus male|type=polypeptide|length=47bp
MMELLVRAGSNLNAQNVAGDAPLHKAALNGHVVAAGYLIRAGADLNL
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mRNA from alignment at F-serratus_M_contig7463:16996..17136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7463.18698.1 ID=mRNA_F-serratus_M_contig7463.18698.1|Name=mRNA_F-serratus_M_contig7463.18698.1|organism=Fucus serratus male|type=mRNA|length=141bp|location=Sequence derived from alignment at F-serratus_M_contig7463:16996..17136+ (Fucus serratus male)
ATGATGGAGCTGCTCGTGAGGGCTGGGTCCAACCTTAATGCGCAAAACGT
GGCGGGGGATGCGCCACTGCACAAGGCCGCACTCAACGGCCACGTGGTGG
CGGCAGGCTACCTCATTCGTGCAGGAGCTGATTTGAACCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig7463:16996..17136+

>mRNA_F-serratus_M_contig7463.18698.1 ID=mRNA_F-serratus_M_contig7463.18698.1|Name=mRNA_F-serratus_M_contig7463.18698.1|organism=Fucus serratus male|type=CDS|length=282bp|location=Sequence derived from alignment at F-serratus_M_contig7463:16996..17136+ (Fucus serratus male)
ATGATGGAGCTGCTCGTGAGGGCTGGGTCCAACCTTAATGCGCAAAACGT
GGCGGGGGATGCGCCACTGCACAAGGCCGCACTCAACGGCCACGTGGTGG
CGGCAGGCTACCTCATTCGTGCAGGAGCTGATTTGAACCTTATGATGGAG
CTGCTCGTGAGGGCTGGGTCCAACCTTAATGCGCAAAACGTGGCGGGGGA
TGCGCCACTGCACAAGGCCGCACTCAACGGCCACGTGGTGGCGGCAGGCT
ACCTCATTCGTGCAGGAGCTGATTTGAACCTT
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