mRNA_F-serratus_M_contig7463.18697.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI) HSP 1 Score: 162 bits (411), Expect = 4.540e-45 Identity = 97/248 (39.11%), Postives = 140/248 (56.45%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARA--FDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
NL + R + E LL S G L +G + A F S + +W++ + +G++ +N+ + G+ GRK+I ID K+ E+PL+ RT R++AK L +S+ T+ +K +R+ S +KP L++E KK R+++ L + + G FD M N V +DEK F + +RYYL ED PV + K I KVMFLA V RPR D N F GKIGIFPF + PA+R S+NR AGTM
Sbjct: 17 NLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKILIDP--RKVSEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWFFMTRESERYYLLPEEDEPVRTCKSKRFITKVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTM 261
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: UPI000B8F2756 (uncharacterized protein LOC110913170 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8F2756) HSP 1 Score: 157 bits (396), Expect = 7.460e-42 Identity = 98/247 (39.68%), Postives = 139/247 (56.28%), Query Frame = 1
Query: 4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDG-VMDINLRNNRGGHSGR-KRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
L R + E +L S GKL G I D A F S V +W + Q G ++D++ R H + KRI I+ +++ ++ L+ RT R++AK L +S+ T+ +K LR + +KP L+EE KK+R+++ L + +D M NVV +DEK + K + YYL GED P+ K + K I KVMFLA V RPR DT+ N F GKIGIFPFT+ PA+R+S+NR AGTM
Sbjct: 13 LTNSERRTIYEVILEQSNDGKLKYGSISDVASHFSVSTRTVSRIWHQARFQVQHGYLVDVS----RKPHIAKQKRIQINF--DQVAQIALRRRTNIRSIAKALNVSKSTVHRRIKEGELRPHTNAIKPNLTEENKKERLEFCLSMITPSLSNPSFYD-MFNVVHIDEKWFYMSKPSKSYYLVPGEDEPLRKCKSKKFITKVMFLAAVARPRFDTLGNEIFSGKIGIFPFTKLEPAKRSSKNRVAGTM 252
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A397CQQ2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CQQ2_9STRA) HSP 1 Score: 148 bits (374), Expect = 5.070e-40 Identity = 88/251 (35.06%), Postives = 136/251 (54.18%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDG----VMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLK-HLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
NL + R +I LL+ S GGK G ++ A++F C R V VW ++ +G + +G + + + ++ VP + R +A G+ + T+ ++K + LR S +L+P+L+E+ K++R+ +AL +V+ H FD M +VV VDEK F KN ++Y+ + E +P + + K I KVMFL V RPR D R FDGKIG++PF +APAQRNS+NR GTM
Sbjct: 20 NLTDAERQAMINMLLASSNGGKRKYGSVKGVADQFNCHRTTVSAVWNSWKAACAEGGSKMIASPPTSRMKGNCGAKTKWSAEVIEAAIKSVPFHKQQTTRALAFHSGVPRSTILRHMKRNRRLRCKSSYLRPLLTEDNKEERMKFALSFVKKNH----VFDDMHDVVHVDEKWFFLTKNKGKFYVYDDETLPHRQSKSKRFITKVMFLCAVARPRYDISIRRMFDGKIGMWPFVLKAPAQRNSKNRPRGTM 266
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: UPI001036D506 (uncharacterized protein LOC114270614 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036D506) HSP 1 Score: 148 bits (373), Expect = 5.530e-40 Identity = 95/247 (38.46%), Postives = 139/247 (56.28%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGH-GGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
NL +R + E LL S GKL RG KF V +W+R +G++ +N+ +++ +SGRKR+ ++ K+ E+PL+ RT R+++K L L + T+ +K +R S LKP LSEE K+ R+ + L + G F++M + V +DEK + K +RYYL E+ P + K I KVMFLA V RPR D N F GKIGI+PFT + PA++NS+NRAAGT+
Sbjct: 27 NLTNHLRQSIFETLLIRSKDGKLKRGCQTKVVAKFSVHVKTVRRIWQRGIACMENGLV-VNV-SSKLTNSGRKRVQLNFG--KVAEIPLRRRTNIRSLSKTLNLPKSTVHRRIKEGKIRPHSNALKPYLSEENKRARLRFCLSMLEPNSLQGQPMFNSMYDYVHIDEKWFYISKEAERYYLLLEEEEPHRCCKSKRFITKVMFLAAVARPRFDENKNEEFSGKIGIWPFTYKEPAKKNSKNRAAGTL 269
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS) HSP 1 Score: 152 bits (383), Expect = 7.330e-40 Identity = 92/247 (37.25%), Postives = 136/247 (55.06%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGAR-AFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
NL ++ R ++E L S S GKL RG +++ A + V + ++ G+ +++ N G GRKR+ +D K+ +P RT R++A+ L + + T+ +K +R + LKP LSEEGK+ R+ + L + ++ F M N V +DEK F K +RYYL E+ P+ + K I KVMFLA V RPR DT N+ F GKIGIFPFT + PA+R S+NR AGT+
Sbjct: 17 NLTDQQRREILEILFSKSASGKLKRGCLKEVAAMYSVDPRTVRQIVQKANSCIAKGLT-VDVSPNLRGRVGRKRVQLDL--NKIAALPYSQRTNIRSIAEALEVPRTTIHRRVKDGVMRPHTNPLKPCLSEEGKRARLQFCLSMLEPSSLQSQPTFKNMYNYVHIDEKWFFMTKESERYYLLPHENEPLRTCKSKHFITKVMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTL 260
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: UPI0019D5B331 (uncharacterized protein LOC120641424 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5B331) HSP 1 Score: 150 bits (378), Expect = 1.970e-38 Identity = 93/248 (37.50%), Postives = 137/248 (55.24%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWV--RDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
+L R ++ E LL S GKL R + AE F +R+ V +WRR +Q + +G+ +++ + + +SGRK++++D + + +PL R R++AK G+ + T+ K LR S LKP L EE KK+R+ W L + R + D M+N++ +DEK K YYL E+ P V + + I KVMFL V +PR D N FDGKIGI+PF R+ PAQR S NRA GT+
Sbjct: 133 DLSATQRQQIYEALLVRSNHGKLRRNATKIVAELFNVNRHAVWRIWRRVKQCRANGL-PVDISSRKPKNSGRKKVEVDLSH--IAAIPLCKRNTIRSLAKAAGIKKSTMHQLFKDGLLRRHSNTLKPYLKEENKKQRLRWCLSMLDQRTLQTEPKFID-MENIIHLDEKWYNGTKKDNTYYLLAQEEDPYRTVHNTNCIHKVMFLTAVTKPRYDNAGNCTFDGKIGIWPFVRKEPAQRRSGNRARGTL 376
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: Q75LI7_ORYSJ (Transposon protein, putative, Mariner sub-class n=5 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q75LI7_ORYSJ) HSP 1 Score: 149 bits (375), Expect = 5.860e-38 Identity = 92/248 (37.10%), Postives = 136/248 (54.84%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHG--GARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
NL R + + L+ + G+L + + AE F R +V +WRR +Q + G+ +N+ + + +SGRK+ +ID + + VPL+ R R+ A G+ + TL LK +R S LKP+L EE K+ R+ W + + D H F M N+V +DEK K + +YL ED P VQ+K+ I KVMFLA V RPR + FDGKIG++PFT++ PAQR S+NR GT+
Sbjct: 140 NLTNIQRQEIYDALVKKTINGRLRKKATTEVAEMFNIKRGRVQDIWRRAKQCRAQGI-PVNVSSRKKTNSGRKKNEIDLSD--VANVPLQLRGTLRSFASAAGIPKSTLHRMLKEGLIRRHSNTLKPLLKEENKRSRLQWCISML-DWHTLPNEPKFVDMRNIVHIDEKWFNTTKKTRTFYLVHWEDDPYRPVQNKNSIDKVMFLAAVARPRYNEEGICTFDGKIGLWPFTKKEPAQRTSQNRPRGTL 383
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: B9FLL3_ORYSJ (Uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FLL3_ORYSJ) HSP 1 Score: 148 bits (373), Expect = 8.880e-38 Identity = 95/247 (38.46%), Postives = 137/247 (55.47%), Query Frame = 1
Query: 4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWV--RDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
L R + E LL+ S G L +G + AE F S V +W+R + GV +N+ + + + GRK+++ID + +PL+ R+ R++A+ LG+S+ TL K LR S LKP L E KK+R+ W + + R + F M+N++ +DEK K + YYL E P VQ+K+ I+KVMFL+ V RPR D N FDGKIGI+PF R+ PAQR+SRNR GT+
Sbjct: 123 LTNPQRRSIYELLLTKSLDGYLEKGSTRVVAEVFNVSIRTVQRIWKRAQLCIAQGVQ-VNVDSRKRYNCGRKKVEIDL--SVVAAIPLRQRSTIRSLAEALGVSKSTLHRLFKEGHLRRHSNSLKPYLKEANKKERLRWCVGMLDHRTLPNNPK-FIEMENIIHIDEKWFNATKKDKTYYLHPLEPEPYRTVQNKNAIEKVMFLSAVARPRFDDEGNCTFDGKIGIWPFVRKEPAQRSSRNRERGTL 365
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: Q7G793_ORYSJ (Transposon protein, putative, Mariner sub-class n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7G793_ORYSJ) HSP 1 Score: 147 bits (372), Expect = 1.560e-37 Identity = 94/246 (38.21%), Postives = 135/246 (54.88%), Query Frame = 1
Query: 4 LDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDGVMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLKHLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGH-GGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
L R R+ E LL+ S GKL + + A+ F S V +W+R + GV +N+ + + + GRK++ ID + +PL+ R+ R++A+ LG+S+ TL K LR S LKP L E KK+R+ W + + F M+N+V +DEK K + +YL E+ P VQ+K+ I+KVMFL+ V RPR D N FDGKIGI+PF R+ PAQR SRNR GT+
Sbjct: 144 LTNTQRQRIYELLLAKSKDGKLEKDTTRAVAQVFNVSIRTVQRIWKRAKLCIAHGVQ-VNVDSRKCYNCGRKKVVIDL--SVVSAIPLRQRSTIRSLAEALGVSKSTLHRLFKEGHLRRHSNSLKPYLKEANKKERLQWCVGMLDHRTLPNDPKFIEMENIVHIDEKWFNATKKDRTFYLHPLEEEPYRPVQNKNAIEKVMFLSTVARPRYDAEGNCTFDGKIGIWPFVRKEPAQRRSRNRERGTL 386
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Match: A0A397ENB5_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ENB5_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.610e-37 Identity = 89/251 (35.46%), Postives = 136/251 (54.18%), Query Frame = 1
Query: 1 NLDEKMRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDG----VMDINLRNNRGGHSGRKRIDIDKYNEKLQEVPLKNRTIQRNVAKQLGLSQ*TLRNNLK-HLGLRSASRFLKPVLSEEGKKKRVDWALRWVRDGHGGARAFDAMDNVVMVDEKCLFFLKNGQRYYLCEGEDVPVEKVQHKSHIKKVMFLAVVGRPRRDTVNNRNFDGKIGIFPFTRRAPAQRNSRNRAAGTM 738
NL + R +I LL+ S GGK G ++ A++F C R V VW ++ +G + +G + + + ++ VP R R +A G+ + T+ ++K + LR S +L+P+L+E+ K++R+ +AL +V+ H FD M +VV VDEK F KN ++Y+ + E +P + + K I KVMFL V RPR D R FDGKIG++PF +APAQRNS+NR GTM
Sbjct: 20 NLTDAERQAMINMLLASSNGGKRKYGSVKGVADQFNCHRTTVSAVWNSWKAACAEGGSKLIASPPTSRMKGNCGAKTKWSAEVIEAAIKSVPFHKRQTTRALAFHSGVPRSTILRHMKRNRRLRCKSSYLRPLLTEDNKEERMKFALSFVKKNH----VFDDMHDVVHVDEKWFFLTKNKGKFYVYDDETLPHRQSKSKRFITKVMFLCAVARPRYDISIRRMFDGKIGMWPFVVKAPAQRNSKNRPRGTM 266 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7463.18697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7463.18697.1 >prot_F-serratus_M_contig7463.18697.1 ID=prot_F-serratus_M_contig7463.18697.1|Name=mRNA_F-serratus_M_contig7463.18697.1|organism=Fucus serratus male|type=polypeptide|length=102bp MRHRLIEHLLSGSTGGKLGRGDIQDAAEKFKCSRYQVMGVWRRFEQQKTDback to top mRNA from alignment at F-serratus_M_contig7463:5873..6610- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7463.18697.1 ID=mRNA_F-serratus_M_contig7463.18697.1|Name=mRNA_F-serratus_M_contig7463.18697.1|organism=Fucus serratus male|type=mRNA|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig7463:5873..6610- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7463:5873..6610- >mRNA_F-serratus_M_contig7463.18697.1 ID=mRNA_F-serratus_M_contig7463.18697.1|Name=mRNA_F-serratus_M_contig7463.18697.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig7463:5873..6610- (Fucus serratus male)back to top |