mRNA_F-serratus_M_contig7461.18696.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7461.18696.1
Unique NamemRNA_F-serratus_M_contig7461.18696.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7461.18696.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.520e-11
Identity = 60/138 (43.48%), Postives = 72/138 (52.17%), Query Frame = 3 
Query:  405 SSTDSAQILRQEQRMFLKAAFQLLEERDHLFNSSMWTSLPKATKREVAATTTRDEVKTEKWRAGAGGLEGGGRRLPHRHVEGDK---------------RLIKSGTLRKATSRSVGAGWQLRYGRPKFVELTPGRFTY 773
            SS+DS  ILR EQRMFLKAAFQLLEERD LF +S+  S   A    V              R   GG   GG     +  EG +               R++KSGTLRKAT+RSVG   +  + + K+VELTPG F Y
Sbjct:  155 SSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIG-SWGTAGGGWVXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTW-KTKYVELTPGSFAY 290
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BLAST of mRNA_F-serratus_M_contig7461.18696.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.340e-6
Identity = 47/123 (38.21%), Postives = 59/123 (47.97%), Query Frame = 3 
Query:  447 MFLKAAFQLLEERDHLFNSSM---------WTSLPKATKREVAATTTRDEVKTEKWRAGAGGLEGGGRRLPHRHVE-----GDKRLIKSGTLRKATSRSVGAGWQLRYGRPKFVELTPGRFTY 773
            MFLKAAFQLLEERD LF +S+         W            +             A + G  G G R   +  E        R++KSGTLRKAT+RSVG   +  + + K+VELTPG F Y
Sbjct:    1 MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTW-KTKYVELTPGSFAY 122
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7461.18696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI1.520e-1143.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE2.340e-638.21PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7461contigF-serratus_M_contig7461:1160..2300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Exons2
Model size773
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7461.18696.1prot_F-serratus_M_contig7461.18696.1Fucus serratus malepolypeptideF-serratus_M_contig7461 1869..2291 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932249.1590734-UTR-F-serratus_M_contig7461:1159..14741622932249.1590734-UTR-F-serratus_M_contig7461:1159..1474Fucus serratus maleUTRF-serratus_M_contig7461 1160..1474 -
1690964217.6808877-UTR-F-serratus_M_contig7461:1159..14741690964217.6808877-UTR-F-serratus_M_contig7461:1159..1474Fucus serratus maleUTRF-serratus_M_contig7461 1160..1474 -
1622932249.1758745-UTR-F-serratus_M_contig7461:1842..18681622932249.1758745-UTR-F-serratus_M_contig7461:1842..1868Fucus serratus maleUTRF-serratus_M_contig7461 1843..1868 -
1690964217.7027824-UTR-F-serratus_M_contig7461:1842..18681690964217.7027824-UTR-F-serratus_M_contig7461:1842..1868Fucus serratus maleUTRF-serratus_M_contig7461 1843..1868 -
1622932249.2166548-UTR-F-serratus_M_contig7461:2291..23001622932249.2166548-UTR-F-serratus_M_contig7461:2291..2300Fucus serratus maleUTRF-serratus_M_contig7461 2292..2300 -
1690964217.7362604-UTR-F-serratus_M_contig7461:2291..23001690964217.7362604-UTR-F-serratus_M_contig7461:2291..2300Fucus serratus maleUTRF-serratus_M_contig7461 2292..2300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932249.2016428-CDS-F-serratus_M_contig7461:1868..22911622932249.2016428-CDS-F-serratus_M_contig7461:1868..2291Fucus serratus maleCDSF-serratus_M_contig7461 1869..2291 -
1690964217.7189927-CDS-F-serratus_M_contig7461:1868..22911690964217.7189927-CDS-F-serratus_M_contig7461:1868..2291Fucus serratus maleCDSF-serratus_M_contig7461 1869..2291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7461.18696.1

>prot_F-serratus_M_contig7461.18696.1 ID=prot_F-serratus_M_contig7461.18696.1|Name=mRNA_F-serratus_M_contig7461.18696.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MKSSVLLGCASDDWSVDSDYTFQDLADGTDAHQGAHSRSASSPERLHLVT
DTGAGKLKEKSKKAGIGTQSDTRVEVDETSAVEARDESDVVLSRKLSTTN
RRELNEVGANWHNEHQYPRPLESEIRRSGNPEAARTVRKS*
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mRNA from alignment at F-serratus_M_contig7461:1160..2300-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7461.18696.1 ID=mRNA_F-serratus_M_contig7461.18696.1|Name=mRNA_F-serratus_M_contig7461.18696.1|organism=Fucus serratus male|type=mRNA|length=1141bp|location=Sequence derived from alignment at F-serratus_M_contig7461:1160..2300- (Fucus serratus male)
CTGATCGCCATGAAGAGCTCCGTGCTTCTAGGCTGCGCCAGCGATGACTG
GTCGGTCGACAGCGACTACACATTCCAGGACTTGGCGGACGGCACGGACG
CTCACCAAGGGGCGCACTCGCGATCCGCTTCCTCTCCAGAACGTCTCCAC
CTGGTCACGGACACAGGTGCCGGGAAGCTGAAGGAAAAATCGAAGAAGGC
AGGCATTGGTACCCAATCCGACACCAGGGTGGAGGTGGATGAGACGTCAG
CTGTGGAAGCGCGTGACGAGTCGGACGTTGTCCTGTCGAGAAAGTTGTCG
ACAACAAATCGCAGGGAACTCAATGAGGTTGGTGCCAATTGGCACAACGA
GCACCAGTATCCCCGCCCGCTTGAATCCGAGATCCGTCGCTCCGGGAATC
CCGAAGCAGCACGGACAGTGCGCAAATCTTGAGGCAGGAGCAACGAATGT
TTCTAAAGGTAGGCGCGCCGGGGTGCTAGGAAAGCGTCGTTCATAGATGA
CACCGTTACGTAGGTGCTAGCGAGCGCCTACCACATGAGACCCTCGCATG
AGCCTCTTTCTCGTTGCGTATGCTTCAAACCCTTACTTCGCATCTCACAT
CGCGCTCATGAAAAGGAACGACCGCAGCAGAACGAGCAAGGGCTACACCT
CACAGTGCCGCCTTTGTTTGTTTTCTGTGTCCACCTCCGGAATCCTGCCA
TCTCTCAGCAAAGTTTCCTCTTTAATCGGAGACACTACACAATAGAAACC
TATATACCTAGTAAGATTAAATTTACCTAGTCCCGGGCGAGAAACGACGA
CGTGGCTCCGCGGGTCCTGCTCGCAGGCGGCGTTCCAACTGCTGGAGGAA
CGAGATCACCTCTTCAATTCTTCCATGTGGACGAGTCTCCCCAAGGCCAC
CAAGCGAGAAGTTGCAGCGACCACCACGAGAGACGAGGTAAAGACAGAGA
AGTGGCGAGCAGGAGCCGGCGGGCTCGAAGGGGGCGGTAGAAGGCTACCG
CACAGACACGTGGAAGGGGACAAGCGCTTGATAAAGTCGGGGACGCTGCG
CAAGGCAACGTCAAGGAGCGTGGGGGCAGGTTGGCAACTACGATATGGAA
GACCCAAGTTCGTCGAGCTTACCCCGGGGCGGTTTACATAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7461:1160..2300-

>mRNA_F-serratus_M_contig7461.18696.1 ID=mRNA_F-serratus_M_contig7461.18696.1|Name=mRNA_F-serratus_M_contig7461.18696.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig7461:1160..2300- (Fucus serratus male)
ATGAAGAGCTCCGTGCTTCTAGGCTGCGCCAGCGATGACTGGTCGGTCGA
CAGCGACTACACATTCCAGGACTTGGCGGACGGCACGGACGCTCACCAAG
GGGCGCACTCGCGATCCGCTTCCTCTCCAGAACGTCTCCACCTGGTCACG
GACACAGGTGCCGGGAAGCTGAAGGAAAAATCGAAGAAGGCAGGCATTGG
TACCCAATCCGACACCAGGGTGGAGGTGGATGAGACGTCAGCTGTGGAAG
CGCGTGACGAGTCGGACGTTGTCCTGTCGAGAAAGTTGTCGACAACAAAT
CGCAGGGAACTCAATGAGGTTGGTGCCAATTGGCACAACGAGCACCAGTA
TCCCCGCCCGCTTGAATCCGAGATCCGTCGCTCCGGGAATCCCGAAGCAG
CACGGACAGTGCGCAAATCTTGAATGAAGAGCTCCGTGCTTCTAGGCTGC
GCCAGCGATGACTGGTCGGTCGACAGCGACTACACATTCCAGGACTTGGC
GGACGGCACGGACGCTCACCAAGGGGCGCACTCGCGATCCGCTTCCTCTC
CAGAACGTCTCCACCTGGTCACGGACACAGGTGCCGGGAAGCTGAAGGAA
AAATCGAAGAAGGCAGGCATTGGTACCCAATCCGACACCAGGGTGGAGGT
GGATGAGACGTCAGCTGTGGAAGCGCGTGACGAGTCGGACGTTGTCCTGT
CGAGAAAGTTGTCGACAACAAATCGCAGGGAACTCAATGAGGTTGGTGCC
AATTGGCACAACGAGCACCAGTATCCCCGCCCGCTTGAATCCGAGATCCG
TCGCTCCGGGAATCCCGAAGCAGCACGGACAGTGCGCAAATCTTGA
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