mRNA_F-serratus_M_contig7458.18694.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7458.18694.1
Unique NamemRNA_F-serratus_M_contig7458.18694.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7458.18694.1 vs. uniprot
Match: A0A6H5JEZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEZ4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.340e-9
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 3 
Query:  159 VLDRDDIQGGSCFAPIADDYVFFRQLQEPHMVFIQYQLAVLGSLIFMILICWRRHGSMISALYAPPA 359
            V D   +  G C A   D+ V   + Q PHM FI+ Q+AVL  L+ MIL+CWRRHG MIS LYAPPA
Sbjct:  364 VSDDQLLYDGDCAA--GDERVMSWR-QTPHMAFIECQVAVLVVLVSMILVCWRRHGRMISVLYAPPA 427
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BLAST of mRNA_F-serratus_M_contig7458.18694.1 vs. uniprot
Match: D7G4J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.920e-9
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  237 QEPHMVFIQYQLAVLGSLIFMILICWRRHGSMISALYAPPA 359
            Q PHM FI+ Q+AVL  L+ MIL+CWRRHG MIS LYAPPA
Sbjct:  296 QTPHMAFIECQVAVLVVLVSMILVCWRRHGRMISVLYAPPA 336
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7458.18694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEZ4_9PHAE7.340e-953.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4J9_ECTSI8.920e-970.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7458contigF-serratus_M_contig7458:10210..11647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_000350.1
Exons3
Model size405
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7458.18694.1prot_F-serratus_M_contig7458.18694.1Fucus serratus malepolypeptideF-serratus_M_contig7458 10230..11646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.9479516-UTR-F-serratus_M_contig7458:10209..102291622932248.9479516-UTR-F-serratus_M_contig7458:10209..10229Fucus serratus maleUTRF-serratus_M_contig7458 10210..10229 +
1690964217.5636508-UTR-F-serratus_M_contig7458:10209..102291690964217.5636508-UTR-F-serratus_M_contig7458:10209..10229Fucus serratus maleUTRF-serratus_M_contig7458 10210..10229 +
1622932249.0161893-UTR-F-serratus_M_contig7458:11646..116471622932249.0161893-UTR-F-serratus_M_contig7458:11646..11647Fucus serratus maleUTRF-serratus_M_contig7458 11647..11647 +
1690964217.6154344-UTR-F-serratus_M_contig7458:11646..116471690964217.6154344-UTR-F-serratus_M_contig7458:11646..11647Fucus serratus maleUTRF-serratus_M_contig7458 11647..11647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.968283-CDS-F-serratus_M_contig7458:10229..103801622932248.968283-CDS-F-serratus_M_contig7458:10229..10380Fucus serratus maleCDSF-serratus_M_contig7458 10230..10380 +
1690964217.575317-CDS-F-serratus_M_contig7458:10229..103801690964217.575317-CDS-F-serratus_M_contig7458:10229..10380Fucus serratus maleCDSF-serratus_M_contig7458 10230..10380 +
1622932248.9829302-CDS-F-serratus_M_contig7458:10769..108461622932248.9829302-CDS-F-serratus_M_contig7458:10769..10846Fucus serratus maleCDSF-serratus_M_contig7458 10770..10846 +
1690964217.5855882-CDS-F-serratus_M_contig7458:10769..108461690964217.5855882-CDS-F-serratus_M_contig7458:10769..10846Fucus serratus maleCDSF-serratus_M_contig7458 10770..10846 +
1622932248.9992986-CDS-F-serratus_M_contig7458:11490..116461622932248.9992986-CDS-F-serratus_M_contig7458:11490..11646Fucus serratus maleCDSF-serratus_M_contig7458 11491..11646 +
1690964217.6021743-CDS-F-serratus_M_contig7458:11490..116461690964217.6021743-CDS-F-serratus_M_contig7458:11490..11646Fucus serratus maleCDSF-serratus_M_contig7458 11491..11646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7458.18694.1

>prot_F-serratus_M_contig7458.18694.1 ID=prot_F-serratus_M_contig7458.18694.1|Name=mRNA_F-serratus_M_contig7458.18694.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MKAADGGGGDDTAGLAAMGTAAEGAAAAAVSMVAGDVPGARDAAFSVLDR
DDIQGGSCFAPIADDYVFFRQLQEPHMVFIQYQLAVLGSLIFMILICWRR
HGSMISALYAPPAFPDARGQIAGNAPS*
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mRNA from alignment at F-serratus_M_contig7458:10210..11647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7458.18694.1 ID=mRNA_F-serratus_M_contig7458.18694.1|Name=mRNA_F-serratus_M_contig7458.18694.1|organism=Fucus serratus male|type=mRNA|length=1438bp|location=Sequence derived from alignment at F-serratus_M_contig7458:10210..11647+ (Fucus serratus male)
AGGCGGAGACGAAGGCGGAGATGAAGGCGGCCGATGGAGGGGGCGGGGAT
GACACCGCAGGCTTGGCGGCAATGGGGACGGCTGCTGAGGGTGCTGCTGC
TGCTGCGGTGTCGATGGTGGCTGGGGACGTCCCTGGTGCGAGGGACGCCG
CCTTTTCCGTTCTTGATAGAGGTGATGTGTTTTTGTTTAGACATTACTTC
CTGTGTTTTCTTGTTGCTATGTTTCTTTCTTTTTTACTATTTTAAAAATA
ATGTGCTGTCTGGCTGTCTGTCTGGCTGTTTCTCAACGTATTTTGTGTTG
CACCTTTAGCTTCGTTTTAACTGTGGGTTGTATCGCATCGCTCGTGGTCA
AGATTTTTGTCAGTTCCCCCTTCCCCCCCCCCTCCCCCCCCTACCCTCCC
GCACCTCCCACGCGGCATCGATATTGAGTCCGAGGAGTGAAAACTGCGCC
GTGTGGCGGGTTCTTAACGGTGTAACCGTCGTTTCTTCGTGTTTCGAGAT
TCCCCCTCCATTTTTCCTTTCTTGTCTGAATGAGTCTGAATGAACGTTTC
GCGTTCACAGATGACATTCAGGGGGGGTCGTGCTTCGCGCCGATTGCCGA
CGATTACGTCTTCTTCCGACAGCTGCAGGAACCACACGTGAGTCTGGATG
TGTATCCAAACGGCCAGGGCTGTTGAAAGTAGCGGCAGCAGATGCCACAT
CGACAGATGCAGCAGCGCCGCGGTGGATCGTCTTGGTGGTATTTTGTGCG
TGGAGCCAGCCAGATCCAGGTTCCGTTGACCCGACGGCTGTTGTCGCTGG
CACAACCGCGCGGGGGTTGAAGCGGTTGCGACGATCGTTGTGCAAAGTCA
AGATCATATGTACCGGTTCGGTCCAAAATCTTTATGGTATTTACCAGTTG
ATAGAGAAGACAGGAGGTTAACGTTCCAACAATCTACCACTTCCGTGCTT
CGTTTTGTACGGTTTTGACCGAAGGGCTATTTTGTTTTTTCTTCTTCTTC
TTCTTCTTGATGCTACGTTAGTGTGGTGCAAATGTTTTGTTTCTCGGCCT
CCGCTCACTCACCTGTTTGTTTTTCTCTGACGGCCCAGAGCATGAACGAT
ACCGTAGACGGTTTGGAGGGATGCAATACAATCAAGACCGGCCTCGCACC
TCGTGTAGCGCAGATCATTCTGTACTTTATTTTTTAGTAAAAAAAGGGCC
AGGGACGTTTCAACTCTTTTCGGTGTGTTTTGTAACCCAGTCCCTAACCC
CCCCCCTCCCCTCTCTCTGCTCGCCTCCCAGATGGTGTTCATCCAGTACC
AGCTGGCTGTCCTGGGCAGCCTGATCTTCATGATCCTAATTTGTTGGAGG
AGGCACGGTAGCATGATCTCGGCCTTGTACGCCCCACCCGCATTCCCGGA
TGCACGGGGCCAGATCGCCGGCAATGCGCCATCATGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7458:10210..11647+

>mRNA_F-serratus_M_contig7458.18694.1 ID=mRNA_F-serratus_M_contig7458.18694.1|Name=mRNA_F-serratus_M_contig7458.18694.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig7458:10210..11647+ (Fucus serratus male)
ATGAAGGCGGCCGATGGAGGGGGCGGGGATGACACCGCAGGCTTGGCGGC
AATGGGGACGGCTGCTGAGGGTGCTGCTGCTGCTGCGGTGTCGATGGTGG
CTGGGGACGTCCCTGGTGCGAGGGACGCCGCCTTTTCCGTTCTTGATAGA
GATGAAGGCGGCCGATGGAGGGGGCGGGGATGACACCGCAGGCTTGGCGG
CAATGGGGACGGCTGCTGAGGGTGCTGCTGCTGCTGCGGTGTCGATGGTG
GCTGGGGACGTCCCTGGTGCGAGGGACGCCGCCTTTTCCGTTCTTGATAG
AGATGACATTCAGGGGGGGTCGTGCTTCGCGCCGATTGCCGACGATTACG
TCTTCTTCCGACAGCTGCAGGAACCACACATGACATTCAGGGGGGGTCGT
GCTTCGCGCCGATTGCCGACGATTACGTCTTCTTCCGACAGCTGCAGGAA
CCACACATGGTGTTCATCCAGTACCAGCTGGCTGTCCTGGGCAGCCTGAT
CTTCATGATCCTAATTTGTTGGAGGAGGCACGGTAGCATGATCTCGGCCT
TGTACGCCCCACCCGCATTCCCGGATGCACGGGGCCAGATCGCCGGCAAT
GCGCCATCATGAATGGTGTTCATCCAGTACCAGCTGGCTGTCCTGGGCAG
CCTGATCTTCATGATCCTAATTTGTTGGAGGAGGCACGGTAGCATGATCT
CGGCCTTGTACGCCCCACCCGCATTCCCGGATGCACGGGGCCAGATCGCC
GGCAATGCGCCATCATGA
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