mRNA_F-serratus_M_contig744.18692.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig744.18692.1
Unique NamemRNA_F-serratus_M_contig744.18692.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.810e-42
Identity = 85/156 (54.49%), Postives = 102/156 (65.38%), Query Frame = 1
Query:    1 MLAASVAVEKSLAELSSPYLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKECLG-VAAPFVGCDTEGPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQLDNTG 465
            MLAAS  V+K   +    +LK+Q+NRGVGRK ALRKLAK R   +KA LA+ AC+ GWE G+ YF  V KEC G VAA   G   E  +DVSHAQAGKL+ QA AL+  Y KLL G  +R AFE  AE L ++V TI+ WE  YR  GH+ LD  G
Sbjct:    1 MLAASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGL--EETIDVSHAQAGKLLTQAQALRAVYSKLLQGVSKRQAFEGSAEFLELAVGTIKQWELEYRTKGHIVLDQGG 154          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.750e-35
Identity = 73/133 (54.89%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   55 YLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKEC-LGVAAPFVGCDTEGPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQ 450
            +LK+Q+NRGVGRK ALRKLAK R   +KA  A+ ACR GWE G  YF  V KEC   VA    G +    V VSHAQAG L ++ALALKG Y KLL G  +R AFEE AE   V+ +T+  WE +YR  GH+Q
Sbjct:   19 FLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNES--VLVSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHIQ 149          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.670e-33
Identity = 75/138 (54.35%), Postives = 90/138 (65.22%), Query Frame = 1
Query:   55 YLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKECLG-VAAPFVGCDTEGPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQLDNTG 465
            +LK+Q+NRGVGRK ALRKLAK R   +KA  A+ ACR GWE G  YF  V KEC   VAA   G +    V VSHAQAG L  +ALALK  Y KLL G P+R AFE+ AE   V+ +T+  WE +YR  GH+Q+D  G
Sbjct:  200 FLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNES--VLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHIQMDQKG 335          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 5.330e-33
Identity = 75/138 (54.35%), Postives = 90/138 (65.22%), Query Frame = 1
Query:   55 YLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKECLG-VAAPFVGCDTEGPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQLDNTG 465
            +LK+Q+NRGVGRK ALRKLAK R   +KA  A+ ACR GWE G  YF  V KEC   VAA   G +    V VSHAQAG L  +ALALK  Y KLL G P+R AFE+ AE   V+ +T+  WE +YR  GH+Q+D  G
Sbjct:  200 FLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNES--VLVSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHIQVDQKG 335          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.250e-31
Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   55 YLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKECLG-VAAPFVGCDTEGPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHM 447
            +LK+Q+NRGV R  AL KLA  R   +KA LA+ A + GWE G+ YF  V KEC   VAA   G D    +DVSHAQAGKL+++ALAL+  Y KLL G  RR AFE  AE + +S  TI+ WE  YR  GH+
Sbjct:   46 FLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDET--MDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.120e-29
Identity = 72/147 (48.98%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   55 YLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKECLGVAAPFVGCDTE----------GPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQLDNTG 465
            +LK+Q+NRGVGRK ALRKLAK R   +KA +A+ ACR GWE G  YF  V KEC   ++    C T+            V VSHAQAG L  +ALALKG Y  LL G  +R AFEE AE   V+ +T   WE +YR  GH+Q++  G
Sbjct:  206 FLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHT--CWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHIQVNQRG 350          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.600e-28
Identity = 66/137 (48.18%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   55 YLKQQANRGVGRKSALRKLAKKRLIWDKAILAARACREGWENGIAYFDGVQKECLGVAAPFVGCDTEGPVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQLDNTG 465
            +LK+Q+NRG+GRK ALRKLAK +    K   A+ ACR GWE G      V KEC    A          V VSH+QAG L  +ALA KG Y KLL G  +R AFEE AE   V+ +T+  WE +YR  GH+Q+D  G
Sbjct:  119 FLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIA-VTSAGLNESVLVSHSQAGSLQFKALARKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHIQVDQRG 254          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.910e-13
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  259 PVDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHM 447
            P+DVSHAQAGKL+ +A AL+G Y KLL G  +R AFEE AE L VSV TI+ WE  YR  G +
Sbjct:    6 PIDVSHAQAGKLLTKAHALRGVYSKLLKGVSKRQAFEESAEFLQVSVGTIKQWELEYRTKGRI 68          
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Match: A0A6H5KM80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM80_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-8
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1
Query:  262 VDVSHAQAGKLMVQALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWE 420
            +DVSHAQAGKL+++ALAL+    KLL G  RR AFE  AE + +S  TI+ WE
Sbjct:    1 MDVSHAQAGKLLIKALALRAVSTKLLKGVSRREAFEASAEFIEMSEGTIKQWE 53          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig744.18692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G1V5_ECTSI5.810e-4254.49Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5LDJ5_9PHAE4.750e-3554.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE1.670e-3354.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE5.330e-3354.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LEU9_ECTSI1.250e-3152.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVH8_9PHAE1.120e-2948.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE6.600e-2848.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE1.910e-1360.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM80_9PHAE1.070e-856.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig744contigF-serratus_M_contig744:297303..297767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.7872126-CDS-F-serratus_M_contig744:297302..2977671622932248.7872126-CDS-F-serratus_M_contig744:297302..297767Fucus serratus maleCDSF-serratus_M_contig744 297303..297767 -
1690964217.4885924-CDS-F-serratus_M_contig744:297302..2977671690964217.4885924-CDS-F-serratus_M_contig744:297302..297767Fucus serratus maleCDSF-serratus_M_contig744 297303..297767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig744.18692.1prot_F-serratus_M_contig744.18692.1Fucus serratus malepolypeptideF-serratus_M_contig744 297303..297767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig744.18692.1

>prot_F-serratus_M_contig744.18692.1 ID=prot_F-serratus_M_contig744.18692.1|Name=mRNA_F-serratus_M_contig744.18692.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MLAASVAVEKSLAELSSPYLKQQANRGVGRKSALRKLAKKRLIWDKAILA
ARACREGWENGIAYFDGVQKECLGVAAPFVGCDTEGPVDVSHAQAGKLMV
QALALKGTYKKLLHGWPRRTAFEEMAELLGVSVTTIETWERAYRITGHMQ
LDNTG
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mRNA from alignment at F-serratus_M_contig744:297303..297767-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig744.18692.1 ID=mRNA_F-serratus_M_contig744.18692.1|Name=mRNA_F-serratus_M_contig744.18692.1|organism=Fucus serratus male|type=mRNA|length=465bp|location=Sequence derived from alignment at F-serratus_M_contig744:297303..297767- (Fucus serratus male)
ATGCTGGCCGCGTCGGTCGCGGTGGAAAAGAGCTTGGCTGAGCTGTCTTC GCCATACCTCAAACAGCAGGCTAACAGGGGCGTGGGCAGGAAGAGCGCTC TTCGCAAGCTGGCGAAGAAGCGGTTGATTTGGGACAAGGCGATCTTAGCA GCCAGGGCATGTAGAGAGGGCTGGGAAAATGGAATAGCCTACTTCGATGG CGTCCAAAAAGAATGTCTTGGAGTAGCTGCACCATTCGTCGGATGTGACA CCGAGGGGCCTGTTGACGTTTCGCACGCGCAAGCAGGAAAGCTGATGGTA CAAGCGCTGGCTTTGAAGGGTACTTACAAAAAGCTGCTGCATGGGTGGCC GCGAAGGACTGCTTTCGAAGAAATGGCGGAGCTTCTCGGAGTGAGTGTGA CCACAATCGAGACGTGGGAGAGGGCGTACCGCATCACGGGCCACATGCAG TTGGATAACACCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig744:297303..297767-

>mRNA_F-serratus_M_contig744.18692.1 ID=mRNA_F-serratus_M_contig744.18692.1|Name=mRNA_F-serratus_M_contig744.18692.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig744:297303..297767- (Fucus serratus male)
ATGCTGGCCGCGTCGGTCGCGGTGGAAAAGAGCTTGGCTGAGCTGTCTTC
GCCATACCTCAAACAGCAGGCTAACAGGGGCGTGGGCAGGAAGAGCGCTC
TTCGCAAGCTGGCGAAGAAGCGGTTGATTTGGGACAAGGCGATCTTAGCA
GCCAGGGCATGTAGAGAGGGCTGGGAAAATGGAATAGCCTACTTCGATGG
CGTCCAAAAAGAATGTCTTGGAGTAGCTGCACCATTCGTCGGATGTGACA
CCGAGGGGCCTGTTGACGTTTCGCACGCGCAAGCAGGAAAGCTGATGGTA
CAAGCGCTGGCTTTGAAGGGTACTTACAAAAAGCTGCTGCATGGGTGGCC
GCGAAGGACTGCTTTCGAAGAAATGGCGGAGCTTCTCGGAGTGAGTGTGA
CCACAATCGAGACGTGGGAGAGGGCGTACCGCATCACGGGCCACATGCAG
TTGGATAACACCGGCATGCTGGCCGCGTCGGTCGCGGTGGAAAAGAGCTT
GGCTGAGCTGTCTTCGCCATACCTCAAACAGCAGGCTAACAGGGGCGTGG
GCAGGAAGAGCGCTCTTCGCAAGCTGGCGAAGAAGCGGTTGATTTGGGAC
AAGGCGATCTTAGCAGCCAGGGCATGTAGAGAGGGCTGGGAAAATGGAAT
AGCCTACTTCGATGGCGTCCAAAAAGAATGTCTTGGAGTAGCTGCACCAT
TCGTCGGATGTGACACCGAGGGGCCTGTTGACGTTTCGCACGCGCAAGCA
GGAAAGCTGATGGTACAAGCGCTGGCTTTGAAGGGTACTTACAAAAAGCT
GCTGCATGGGTGGCCGCGAAGGACTGCTTTCGAAGAAATGGCGGAGCTTC
TCGGAGTGAGTGTGACCACAATCGAGACGTGGGAGAGGGCGTACCGCATC
ACGGGCCACATGCAGTTGGATAACACCGGC
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