mRNA_F-serratus_M_contig7431.18690.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7431.18690.1
Unique NamemRNA_F-serratus_M_contig7431.18690.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7431.18690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7431contigF-serratus_M_contig7431:16653..17155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7431.18690.1prot_F-serratus_M_contig7431.18690.1Fucus serratus malepolypeptideF-serratus_M_contig7431 16783..17109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.412983-UTR-F-serratus_M_contig7431:16652..167821622932248.412983-UTR-F-serratus_M_contig7431:16652..16782Fucus serratus maleUTRF-serratus_M_contig7431 16653..16782 +
1690964217.3700976-UTR-F-serratus_M_contig7431:16652..167821690964217.3700976-UTR-F-serratus_M_contig7431:16652..16782Fucus serratus maleUTRF-serratus_M_contig7431 16653..16782 +
1622932248.4462175-UTR-F-serratus_M_contig7431:17109..171551622932248.4462175-UTR-F-serratus_M_contig7431:17109..17155Fucus serratus maleUTRF-serratus_M_contig7431 17110..17155 +
1690964217.392438-UTR-F-serratus_M_contig7431:17109..171551690964217.392438-UTR-F-serratus_M_contig7431:17109..17155Fucus serratus maleUTRF-serratus_M_contig7431 17110..17155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.4304068-CDS-F-serratus_M_contig7431:16782..171091622932248.4304068-CDS-F-serratus_M_contig7431:16782..17109Fucus serratus maleCDSF-serratus_M_contig7431 16783..17109 +
1690964217.3817062-CDS-F-serratus_M_contig7431:16782..171091690964217.3817062-CDS-F-serratus_M_contig7431:16782..17109Fucus serratus maleCDSF-serratus_M_contig7431 16783..17109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7431.18690.1

>prot_F-serratus_M_contig7431.18690.1 ID=prot_F-serratus_M_contig7431.18690.1|Name=mRNA_F-serratus_M_contig7431.18690.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MAWDGIGETPSPYQRLFQAVSEAVSYHAREKDRAGVEGQSLRNGCKFAVA
RGDYQPDKEMLRRTLSWAVYNGNSSLVEEVVLLGATVSLYRRRRLQQWLQ
VALGSLQW*
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mRNA from alignment at F-serratus_M_contig7431:16653..17155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7431.18690.1 ID=mRNA_F-serratus_M_contig7431.18690.1|Name=mRNA_F-serratus_M_contig7431.18690.1|organism=Fucus serratus male|type=mRNA|length=503bp|location=Sequence derived from alignment at F-serratus_M_contig7431:16653..17155+ (Fucus serratus male)
CGTTGAGTACCAAGCACCAGCAAATACATCGAACGCCTAACGGCGTTCTC
ACGTCGTGCGTTTAGAAAGAACGACTGATTGACGTTCGTGTATTTGAGCC
CGACTTCGTTTGCCTTGTGATGTTCTGGTGATGGCTTGGGATGGCATCGG
CGAGACCCCTAGTCCTTACCAGCGACTGTTTCAGGCAGTGTCGGAGGCGG
TGTCTTACCATGCTAGGGAGAAGGACCGTGCTGGGGTGGAGGGCCAGTCG
CTGCGTAATGGGTGCAAATTCGCCGTGGCTCGAGGAGATTACCAGCCAGA
CAAGGAAATGCTGAGGCGCACCTTGAGTTGGGCCGTCTACAACGGCAACA
GCTCTCTTGTCGAAGAGGTCGTGCTGTTGGGCGCGACGGTTTCCTTGTAC
CGAAGACGACGACTGCAACAGTGGCTACAGGTTGCTCTGGGCAGCCTACA
ATGGTAATGATGACATTGTTAGCTGGCTCCTGGTGGCCAGCGCGGGTGGG
GGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7431:16653..17155+

>mRNA_F-serratus_M_contig7431.18690.1 ID=mRNA_F-serratus_M_contig7431.18690.1|Name=mRNA_F-serratus_M_contig7431.18690.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig7431:16653..17155+ (Fucus serratus male)
ATGGCTTGGGATGGCATCGGCGAGACCCCTAGTCCTTACCAGCGACTGTT
TCAGGCAGTGTCGGAGGCGGTGTCTTACCATGCTAGGGAGAAGGACCGTG
CTGGGGTGGAGGGCCAGTCGCTGCGTAATGGGTGCAAATTCGCCGTGGCT
CGAGGAGATTACCAGCCAGACAAGGAAATGCTGAGGCGCACCTTGAGTTG
GGCCGTCTACAACGGCAACAGCTCTCTTGTCGAAGAGGTCGTGCTGTTGG
GCGCGACGGTTTCCTTGTACCGAAGACGACGACTGCAACAGTGGCTACAG
GTTGCTCTGGGCAGCCTACAATGGTAAATGGCTTGGGATGGCATCGGCGA
GACCCCTAGTCCTTACCAGCGACTGTTTCAGGCAGTGTCGGAGGCGGTGT
CTTACCATGCTAGGGAGAAGGACCGTGCTGGGGTGGAGGGCCAGTCGCTG
CGTAATGGGTGCAAATTCGCCGTGGCTCGAGGAGATTACCAGCCAGACAA
GGAAATGCTGAGGCGCACCTTGAGTTGGGCCGTCTACAACGGCAACAGCT
CTCTTGTCGAAGAGGTCGTGCTGTTGGGCGCGACGGTTTCCTTGTACCGA
AGACGACGACTGCAACAGTGGCTACAGGTTGCTCTGGGCAGCCTACAATG
GTAA
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