mRNA_F-serratus_M_contig743.18687.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig743.18687.1
Unique NamemRNA_F-serratus_M_contig743.18687.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig743.18687.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 7.790e-29
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 VFRGILSSVGAMLHFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNH 315
            VFRG+L+SVGAM H++   AL     +VWG  NDE VL RL++YLQASSAL+FAARGQ F+D +L +L +RA D VEN++LTLGR GV+T+ H W+H  ++I  H
Sbjct:  479 VFRGLLASVGAMRHYLSSNALRAQNIEVWGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAH 583
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BLAST of mRNA_F-serratus_M_contig743.18687.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.350e-26
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFRGILSSVGAMLHFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNH 315
            V RG+L S   M H++   AL +   ++WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L QL  RA DYVENA+LTLGR+GVRTS H W+H+ D+I  H
Sbjct:  201 VLRGLLLSTAMMKHYLNSTALKKYNGEIWGHVSPEEVRDRVLEYFQASSSLSFAANGQEFTDFDLLQLHTRAGDYVENAKLTLGRAGVRTSNHMWLHFADSIKAH 305
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BLAST of mRNA_F-serratus_M_contig743.18687.1 vs. uniprot
Match: A0A6H5KN48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN48_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.390e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   55 VALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYV---------ENARLTLGRSGVRTSTHNWIHWTDTILNH 315
            V  ++   + WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L +L  RA DYV         ENA+LTLG +GVRTS H W+H+ D+I  H
Sbjct:    2 VTRHEPTAEKWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFVENAKLTLGLAGVRTSNHMWLHFADSIKPH 97
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BLAST of mRNA_F-serratus_M_contig743.18687.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.060e-14
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   40 HFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNH 315
            +++   AL +   ++ G+ + E+V  R+ EY Q SS+LSFAA GQ+FTD +L +L  RA DY     LTLGR+GVRTS H W+H+ D+I  H
Sbjct:   41 NYLNSTALKKYNEEIRGDVSPEEVRDRVLEYFQPSSSLSFAANGQEFTDLDLDELHTRAGDY-----LTLGRAGVRTSNHMWLHFADSIKAH 127
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BLAST of mRNA_F-serratus_M_contig743.18687.1 vs. uniprot
Match: A0A6H5KFX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-7
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   82 VWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGV 264
            +WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L +L  RA DYV  A  T   + V
Sbjct:    1 MWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFNANV 61
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig743.18687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K953_9PHAE7.790e-2957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ46_ECTSI1.350e-2654.29Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KN48_9PHAE4.390e-1848.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM61_9PHAE1.060e-1446.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFX1_9PHAE1.070e-750.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig743contigF-serratus_M_contig743:376868..378129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size712
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig743.18687.1prot_F-serratus_M_contig743.18687.1Fucus serratus malepolypeptideF-serratus_M_contig743 376901..377843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.2510161-UTR-F-serratus_M_contig743:376867..3769001622932248.2510161-UTR-F-serratus_M_contig743:376867..376900Fucus serratus maleUTRF-serratus_M_contig743 376868..376900 +
1690964217.2870963-UTR-F-serratus_M_contig743:376867..3769001690964217.2870963-UTR-F-serratus_M_contig743:376867..376900Fucus serratus maleUTRF-serratus_M_contig743 376868..376900 +
1622932248.3190436-UTR-F-serratus_M_contig743:377843..3781291622932248.3190436-UTR-F-serratus_M_contig743:377843..378129Fucus serratus maleUTRF-serratus_M_contig743 377844..378129 +
1690964217.3383665-UTR-F-serratus_M_contig743:377843..3781291690964217.3383665-UTR-F-serratus_M_contig743:377843..378129Fucus serratus maleUTRF-serratus_M_contig743 377844..378129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.26624-CDS-F-serratus_M_contig743:376900..3769031622932248.26624-CDS-F-serratus_M_contig743:376900..376903Fucus serratus maleCDSF-serratus_M_contig743 376901..376903 +
1690964217.2987723-CDS-F-serratus_M_contig743:376900..3769031690964217.2987723-CDS-F-serratus_M_contig743:376900..376903Fucus serratus maleCDSF-serratus_M_contig743 376901..376903 +
1622932248.2825785-CDS-F-serratus_M_contig743:377179..3773681622932248.2825785-CDS-F-serratus_M_contig743:377179..377368Fucus serratus maleCDSF-serratus_M_contig743 377180..377368 +
1690964217.3109791-CDS-F-serratus_M_contig743:377179..3773681690964217.3109791-CDS-F-serratus_M_contig743:377179..377368Fucus serratus maleCDSF-serratus_M_contig743 377180..377368 +
1622932248.2967594-CDS-F-serratus_M_contig743:377642..3778431622932248.2967594-CDS-F-serratus_M_contig743:377642..377843Fucus serratus maleCDSF-serratus_M_contig743 377643..377843 +
1690964217.323897-CDS-F-serratus_M_contig743:377642..3778431690964217.323897-CDS-F-serratus_M_contig743:377642..377843Fucus serratus maleCDSF-serratus_M_contig743 377643..377843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig743.18687.1

>prot_F-serratus_M_contig743.18687.1 ID=prot_F-serratus_M_contig743.18687.1|Name=mRNA_F-serratus_M_contig743.18687.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MLHFMKPVALNQMRRDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFT
DEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNHCVNMAL
HRSLFFCERTIEVADQRIVNDYSRCNIHAV*
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mRNA from alignment at F-serratus_M_contig743:376868..378129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig743.18687.1 ID=mRNA_F-serratus_M_contig743.18687.1|Name=mRNA_F-serratus_M_contig743.18687.1|organism=Fucus serratus male|type=mRNA|length=1262bp|location=Sequence derived from alignment at F-serratus_M_contig743:376868..378129+ (Fucus serratus male)
GTGTTCCGAGGAATACTTTCTTCCGTTGGAGCCATGGTGAGGGAGATACG
AGCTTGACTCTATTTTCACCATGCTGGGCTTAGACAATGACAGAAAAAAC
ATCTAAAATCTTCAGGTTTTACATGTTTCAAAACGTTCAAGGGATATTTC
CTTGCTAAGCGAGACACAGCAGCGACACAGGTAATAATGTAATGTGCTTC
CTCGCAGAGCGCTGGTGAAACCATCTCTATATCGACCGTGCGCTAGTTTA
TAGTCGCACAGTCTCATGTCTCATGTCTCTGCTCTCGTCTGACCTATTCG
TAATCCTCACAGCTTCATTTCATGAAGCCCGTGGCTCTAAATCAGATGCG
TCGGGATGTGTGGGGAAATTCGAACGACGAGGACGTGCTCAAGCGATTGA
AGGAGTATCTTCAGGCGTCATCTGCTCTCTCTTTCGCGGCCCGGGGCCAG
CAGTTCACGGATGAAGAACTCCGTCAGCTGCGAATCAGGGCAGAGGACTA
CGTAAGCCTCTCGTACGTTGCACACCATTTTACTCCCGAGCGCAGCTATC
AAGTAGTTTGTAGCAAGGTTTGTCTTGATAGTTCCATACTCGTCTATCTG
TCGCGTGTTAAGAGACTTCGTCGTTAAACTCTACCGCCGCCTATATTACC
GTCGTCCATTCGGCGAAGTGTATTTCTTCTGAACCAAAAAGAGAGCACCA
TTTTTTGCTCCCGGAACTCTGGCGCATATGGTTGCCGTACTATCCAATAT
TCTTCGCGATCTGGTTCCATTGCAGGTTGAAAATGCGAGACTAACACTCG
GCCGGTCGGGCGTGAGAACAAGCACCCACAATTGGATACACTGGACGGAC
ACTATCCTCAATCACTGTGTGAACATGGCCTTGCATCGCAGTTTATTTTT
CTGTGAACGAACCATTGAAGTGGCGGATCAGCGAATCGTTAACGATTACA
GTCGTTGTAATATTCATGCAGTGTAAGGTGAAGAACATAAACCCTTTCAC
TTGTTCATCTCTTTCGACCCCTCGTTTATTCCGCCTGTTATTATAAGACA
CTATATAGCACGACGAAGAGCAGCTGCGTCAGGTGATCCGCTATGTAGTA
CTACAGATGTGCGCGGTCATATAATACCTCTTTCATATCCTGGTTTTTGT
CTTTCAGCTATGAGCGTATTTGAGGTATACATAGTATTCGTTCGTTGATT
TTAAAACTAAAAGTCCCGAACATAACTTTTTGATGCCTTCCGAAATGAAT
ACGTTCCCCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig743:376868..378129+

>mRNA_F-serratus_M_contig743.18687.1 ID=mRNA_F-serratus_M_contig743.18687.1|Name=mRNA_F-serratus_M_contig743.18687.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig743:376868..378129+ (Fucus serratus male)
ATGATGCTTCATTTCATGAAGCCCGTGGCTCTAAATCAGATGCGTCGGGA
TGTGTGGGGAAATTCGAACGACGAGGACGTGCTCAAGCGATTGAAGGAGT
ATCTTCAGGCGTCATCTGCTCTCTCTTTCGCGGCCCGGGGCCAGCAGTTC
ACGGATGAAGAACTCCGTCAGCTGCGAATCAGGGCAGAGGACTACCTTCA
TTTCATGAAGCCCGTGGCTCTAAATCAGATGCGTCGGGATGTGTGGGGAA
ATTCGAACGACGAGGACGTGCTCAAGCGATTGAAGGAGTATCTTCAGGCG
TCATCTGCTCTCTCTTTCGCGGCCCGGGGCCAGCAGTTCACGGATGAAGA
ACTCCGTCAGCTGCGAATCAGGGCAGAGGACTACGTTGAAAATGCGAGAC
TAACACTCGGCCGGTCGGGCGTGAGAACAAGCACCCACAATTGGATACAC
TGGACGGACACTATCCTCAATCACTGTGTGAACATGGCCTTGCATCGCAG
TTTATTTTTCTGTGAACGAACCATTGAAGTGGCGGATCAGCGAATCGTTA
ACGATTACAGTCGTTGTAATATTCATGCAGTGTAAGTTGAAAATGCGAGA
CTAACACTCGGCCGGTCGGGCGTGAGAACAAGCACCCACAATTGGATACA
CTGGACGGACACTATCCTCAATCACTGTGTGAACATGGCCTTGCATCGCA
GTTTATTTTTCTGTGAACGAACCATTGAAGTGGCGGATCAGCGAATCGTT
AACGATTACAGTCGTTGTAATATTCATGCAGTGTAA
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