mRNA_F-serratus_M_contig742.18683.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.390e-52 Identity = 122/278 (43.88%), Postives = 152/278 (54.68%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ--------------VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
+ PA V P+RV LK GA V A+P VY P K+AW L G G V+ N+QAV AS AMA PK+ GY LV+DF N Q E VPG M N E + + A + ++D LQ +T GL+TP R PQG++N TSY Q + +L L + VDDV +G +L+ L +L R GL++AA K F CGK+Y V HDPER+ GL MRRPET GELM+FLQ NW SLP+MAEVV PLR
Sbjct: 749 DPPANVEPLRVTLKPGA--RPVKARPRVYNPIKTAW-------LAGLGLVFLNMQAVWASAAMATPKKG--GYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGL---NCFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLR 1012
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.130e-49 Identity = 113/280 (40.36%), Postives = 151/280 (53.93%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKG--YNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ------------VIFST--GDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
+ PA V PM V LK GA V A+ Y P+K+ W L G VY NLQA+ AS M PKR Y V DF +N Q E PGPM + E + ++ + A + ++D LQ IF+ GL++P R PQGV+N TSY QG M +L +L + VDD+ +G + +L+ L +L R GLF+AA K + K CGK+Y + HD +R+ GL +RRPET GELM+FLQ NW SLP+M+E+VAPLR
Sbjct: 640 DPPANVPPMTVKLKTGA--KPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDL---NCIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLR 914
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 165 bits (418), Expect = 9.980e-43 Identity = 109/282 (38.65%), Postives = 144/282 (51.06%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKG----YNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ------------VIFS--TGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
E +V P+++ LK G + V K VY P K+ W L G V +QAV AS AM PK G Y L D+L N QCE VP + + E + GA F +D LQ IFS T +GLF P R PQ V+N T Y Q +M E+L L ++ VDD +G +L+ L +L R + G+F AA K F + + CGK+Y G V DPER++GL MRRPET G+LM+FLQ W SL ++AEV+ P+R
Sbjct: 389 EVQRKVEPLKMTLKPG--VQHVQEKARVYSPAKATWLSGCMAALVAMGMVVKTIQAVWASPAMTVPKPGRVGREGEYRLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGL---NCAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVR 665
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6G0QQ04_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ04_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.070e-25 Identity = 80/274 (29.20%), Postives = 125/274 (45.62%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPI-----NGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQ--------------VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQ 765
+ P RV P++V LK G ++ ++P Y P+ A+ + H + L V+ N ++ AS K++ L + + N + E +P PM E + GA F +D + F T G++TP R P G + +Y QG++ E+LG+L+G + D+ + L+ L +L RC E GL L A+K FA E CGKL V H PERV+GL+ + T GEL +F+ W +P+
Sbjct: 159 DPPVRVAPLQVSLKPG--VTPTKSQPRRYSPDDRAFLERHVDALWQHSLVFRNPRSRWASAPRIVRKKEQDHDPLAGPRMTVYTRAENERTEAMPWPMPVLEVVIGELEGAHVFFVLDWFRGDCQLPLHPDSQEYFTFVTHRGMYTPTRVPTGATDAVAYCQGVVEEILGDLLGNGILCWLGDILGYAADATALMELLDKVLARCEEYGLKLLAKKCQFFATEVMWCGKLISAQGVMHCPERVQGLIGIPLSRTAGELQQFICAITWMRRGIPE 430
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A2P4XTQ4_9STRA (RNA-directed DNA polymerase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTQ4_9STRA) HSP 1 Score: 113 bits (283), Expect = 9.620e-25 Identity = 82/278 (29.50%), Postives = 121/278 (43.53%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMD-------------CLQVI-FSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
+ P RV PMR+ L+ A + + Y + A+ + + + L G V N + A A+ K G+ + D+ P+N + G N + GA F D C +++ F T DG+FTP+R PQG + + Q M E ++ + + +DDV +F S AE + LR +R L L A+K LFA + CGK+ G V HDP R+ L M P T L FL NW S+ A V PL+
Sbjct: 513 DEPTRVEPMRITLRPDAQPYRSGVRK--YPDMQRAFLRTYVQELLDNGLVRRNNSSRWACAALPVRKAGGDGFRITVDYRPVNKLTVPLAGTTPNLTAVTQSVRGAYGFGQFDLFKRFWQLPLMEECQELLSFVTEDGVFTPLRVPQGASDSAMHFQLQMHECFREMLYDSVLVWIDDVLLFSTSPAEFLAKLRVFFQILRQRNLKLNAKKCTLFAPKVIWCGKVIDGEEVQHDPARLATLRKMPLPPTAAALQTFLCAVNWLMDSMVDYARTVGPLQ 788
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A2P4X8V4_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8V4_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.450e-23 Identity = 88/280 (31.43%), Postives = 127/280 (45.36%), Query Frame = 1
Query: 7 PARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKG-YNLVADFLPINGQCELVPGPMRNSETEGE---------KYA------GAVAFCTMDCLQVIFS--TGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
PA+V ++V L+ A + + + Y P ++ + + + L G + N + AS + K + L D+ P+N Q V M T+GE YA G F + Q IFS T DG+F+P+R PQGV + + Q M VL ++ R +DD+ +F + + + L+ GL L K LF E K CG+L G + HDP RV L + P TV EL F+ VANW SLP A VVAPL+
Sbjct: 397 PAKVESLQVTLRDDAVPFRCHGRN--YPPLQAEFIRGYIRQLLERGLIRKNNASKWASAVVPVRKPGTDNQFRLTIDYRPVNAQTVPVADRM---PTQGEVIGAVRGAKHYARFHLPEGFWQFPLHEDSQEIFSFLTPDGVFSPLRVPQGVTDSALHFQAQMQTVLAPMIPRNVICWIDDILIFAKDMDSFLDALQEFFDIVGGHGLRLHPSKSSLFESEVKWCGRLISGDGIRHDPARVEALTTLPLPSTVAELQYFVCVANWLHESLPDFARVVAPLQ 671
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: H3GHY8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHY8_PHYRM) HSP 1 Score: 109 bits (273), Expect = 2.000e-23 Identity = 81/280 (28.93%), Postives = 122/280 (43.57%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGAD--LSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCL------------QVIFS--TGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
+ PA+V PMRV L+ ++ S V P + + A+ + + + G + N + A A+ K GY + D+ P+N + GP N + GA F D Q +FS T DG+FTP+R PQG + + Q M + +++ + + +DDV +F +S +E I LR +R L L A+ LFA CGK+ G + HD R+ L M P T L FL NW S+ A V PL+
Sbjct: 448 DEPAKVEPMRVALRPDSEPYRSGVRKHPDM----QRAFLRTYVQEPLDNGLIIRNNNSRWACAALPVRKSSGDGYRITVDYRPVNKMTMPLAGPTPNLAAVTQSVRGAYGFGQFDLFKGFWQMPLAAESQELFSFVTEDGVFTPLRVPQGASDSAMFFQLQMHDCFRSMLYDSVLVWIDDVLLFAKSPSEFIEKLRLFFQILRQRNLKLNAKTCTLFAHRVVWCGKVVDGEGLEHDSARLSALREMPLPPTAAALQSFLCAVNWLRDSMVDYARTVGPLQ 723
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A2P4XNQ9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNQ9_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.150e-22 Identity = 77/277 (27.80%), Postives = 124/277 (44.77%), Query Frame = 1
Query: 7 PARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQCK-GYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMD-------------CLQVI-FSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
PARV P++ + S ++A G K + EH L G + N + AS A+ K K G+ + ++ +N + + G M + AG D C ++ F T DG++TP+R PQG + + Q M V L+ + + +DDV V+G++ E + NL+ E L L A+K VL + E CG++ G + DP+R+ GLV + P+T +L +FL V NW S+ + PL+
Sbjct: 411 PARVEPLK-------EWSHIDANQGNIHQRKIKFLDEHIAQLMQFGFIKKNNLSKWASNAVPVRKSDDKTGFRVTNAYIDVNKRTVPIAGTMPHLSVVLSFVAGVKFIAKFDMFKGFWQIMLAEECQEIFSFMTHDGVYTPLRVPQGATDSALHFQNQMQTVYKPLLYKGALVWIDDVIVYGKTEEEFLANLKLFYELTAEYRLKLNAKKSVLMSFEVSWCGRIIDGEGIRQDPQRLSGLVSLPLPKTAADLQRFLCVCNWIRDSIVDFVRIFEPLQ 680
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6A3GUM3_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GUM3_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 4.620e-18 Identity = 70/245 (28.57%), Postives = 110/245 (44.90%), Query Frame = 1
Query: 112 KEHFELLCGTGTVYPNLQAVCASVAMAFPK----RQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMD-------------CLQVI-FSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
+EH L G V N + AS A+ K + +G N +++ IN + + G M + +G D C ++ F T DG++TP+R PQG + + Q M V L+ + I +DD+ V+GR+ + + NLR + L L A+K VL A E CG++ G + DPER+ LV + P+T +L +FL NW S+ A V P++
Sbjct: 86 EEHVAQLLKFGFVKKNNLSKWASNAVPVLKPGSNNEFRGTN---NYIKINNKTVPIAGTMPHFSIILRHVSGVKFIAKFDMFKGFWQIMLAEECQEMFSFMTHDGVYTPLRVPQGATDSALHFQNQMQTVYKPLLYKGALIWIDDIIVYGRTEEDFLANLRLFYELTAKHRLKLNAKKSVLMAFEVSWCGRIIDGQCIRQDPERLSALVSLPLPQTAADLQRFLCACNWIRDSIVDFARVFEPMQ 327
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Match: A0A6G0MGM2_9STRA (RNA-directed DNA polymerase n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MGM2_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.130e-17 Identity = 76/278 (27.34%), Postives = 119/278 (42.81%), Query Frame = 1
Query: 1 ETPARVTPMRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCASVAMAFPKRQ-CKGYNLVADFLPINGQCELVPGPMR----NSETEGEKYAGAVAFC--------TMDCLQ-VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLR 792
+ PARV P+ V LK+GA S+ KP Y P + +E + L G VY N + AS + K Q + IN E++ M G+++ G F C + + + T + +FTP R QG + + Q M + L+ + + +DD+ ++ + + L + + GL L+ +K L+ E K CGK+ V HD R+ L M P T GEL +F+ NW SL A V+PL+
Sbjct: 233 DPPARVPPLEVRLKEGAQPSK--CKPRKYPPHIRQFLREFNQQLVDLGLVYENPTSRWASPVLPVKKSQELMDLRQTTYYREINSVTEVMAAVMPILLVMENPRGKQHFGLFDFLKGFWQLPLAELCQEWMSYMTDEKIFTPRRVHQGCSDAAIHFQKTMEKCFATLLYKHRLVWIDDLLLYADDIDTYLDKLAELFSLLNDFGLKLSVKKSSLYQTEVKWCGKIIDANGVRHDSARIESLRAMPYPSTAGELQQFICAINWMRESLVDYARRVSPLQ 508 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig742.18683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig742.18683.1 >prot_F-serratus_M_contig742.18683.1 ID=prot_F-serratus_M_contig742.18683.1|Name=mRNA_F-serratus_M_contig742.18683.1|organism=Fucus serratus male|type=polypeptide|length=221bp MRVMLKQGADLSQVNAKPGVYGPEKSAWRKEHFELLCGTGTVYPNLQAVCback to top mRNA from alignment at F-serratus_M_contig742:123318..124151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig742.18683.1 ID=mRNA_F-serratus_M_contig742.18683.1|Name=mRNA_F-serratus_M_contig742.18683.1|organism=Fucus serratus male|type=mRNA|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig742:123318..124151+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig742:123318..124151+ >mRNA_F-serratus_M_contig742.18683.1 ID=mRNA_F-serratus_M_contig742.18683.1|Name=mRNA_F-serratus_M_contig742.18683.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig742:123318..124151+ (Fucus serratus male)back to top |