mRNA_F-serratus_M_contig741.18676.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig741.18676.1
Unique NamemRNA_F-serratus_M_contig741.18676.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig741.18676.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.100e-14
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    1 EALQAKFVEDGRNVLMHAAACGSKHGFVTLVENIRGKNDLGHRVLVRQLREVDKVGAPLLFQAASSNSVRC-LKAVLNVLKTVLGVAGLDEQLHAVD 288
            EALQ+K+ EDG+NVL++AAA G++   + LV+ IR +  +G   LV++LRE D  G PLLF AASS    C  +   +++ TVLG  G+ EQ  A+D
Sbjct:   43 EALQSKWPEDGQNVLLYAAAQGNQTWLLGLVDLIRSR--VGIHALVKELRETDIDGVPLLFHAASSRRKHCCFRIAYDLVFTVLGKGGVIEQFEALD 137
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig741.18676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHA0_ECTSI6.100e-1446.39Transient Receptor Potential Channel. Partial sequ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig741contigF-serratus_M_contig741:210208..211272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog2880.D8LHA0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_005210.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.1764612-CDS-F-serratus_M_contig741:210207..2103181622932247.1764612-CDS-F-serratus_M_contig741:210207..210318Fucus serratus maleCDSF-serratus_M_contig741 210208..210318 +
1690964216.826938-CDS-F-serratus_M_contig741:210207..2103181690964216.826938-CDS-F-serratus_M_contig741:210207..210318Fucus serratus maleCDSF-serratus_M_contig741 210208..210318 +
1622932247.1946774-CDS-F-serratus_M_contig741:211087..2112701622932247.1946774-CDS-F-serratus_M_contig741:211087..211270Fucus serratus maleCDSF-serratus_M_contig741 211088..211270 +
1690964216.8443966-CDS-F-serratus_M_contig741:211087..2112701690964216.8443966-CDS-F-serratus_M_contig741:211087..211270Fucus serratus maleCDSF-serratus_M_contig741 211088..211270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig741.18676.1prot_F-serratus_M_contig741.18676.1Fucus serratus malepolypeptideF-serratus_M_contig741 210208..211270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig741.18676.1

>prot_F-serratus_M_contig741.18676.1 ID=prot_F-serratus_M_contig741.18676.1|Name=mRNA_F-serratus_M_contig741.18676.1|organism=Fucus serratus male|type=polypeptide|length=98bp
EALQAKFVEDGRNVLMHAAACGSKHGFVTLVENIRGKNDLGHRVLVRQLR
EVDKVGAPLLFQAASSNSVRCLKAVLNVLKTVLGVAGLDEQLHAVDSK
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mRNA from alignment at F-serratus_M_contig741:210208..211272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig741.18676.1 ID=mRNA_F-serratus_M_contig741.18676.1|Name=mRNA_F-serratus_M_contig741.18676.1|organism=Fucus serratus male|type=mRNA|length=1065bp|location=Sequence derived from alignment at F-serratus_M_contig741:210208..211272+ (Fucus serratus male)
GAAGCCCTCCAGGCGAAGTTCGTCGAGGATGGCCGAAATGTACTGATGCA
TGCCGCGGCGTGCGGGAGCAAACATGGTTTCGTCACATTGGTGGAAAACA
TCAGGGGAAAGGTACGTAAACTCCTCATTTGCTTTGTTTTTGGGCACTCA
TGAGTCGTTCAACAAAAGGGGGAGGCTTCCACGATTATTCTGTCCCCAAT
TTCGGGGGGCGGGGGGGGGGGGGGGGGCGATATTACCAGAACAGTCCCTA
CGGAAGGTAGCCCTCACGACTCCCTACATGATGGCCAAGATTGCCTCAAG
CTCAACTCATTCCACCAGGGGTTTGGTCAAATCTTTTCCCGGGAGAGTCT
TGTTTCCGGCCGTCTCGCCCTGGAATCGGGGATAATTTTGCAACCCCCCC
CCCCCCTGCCCCACTTTTTGCGTTGAACGACTCTGATTCAAACGATTTTT
GCGGCTCGCATGTTGAAGTCGCTCGTGGACCTCGACCTGTACTAAGTGAA
AAGAAAATGTATTTAGCTTGGGATGATTCAGTTATAAAGCGGAAAGTACA
TGATGCGCCAAAAGAGCGGGAGAAGGGGGCTATCGCGCGCGAATATCTCT
TCGTGGAACATTATTATATGAACCAACAACATGAAAACGGTTACTTAAGT
ACCCCACTTAAGTACCCGCTGCCGAGCCCCAGCGCATGAAAACGCAAAGT
TGCACGGAACATGTCATTCTTTTCGGTGCTATCATACTGTGCTGTCAGCT
CCATTCGTCGCACGGATGGAGCGTCACGAAGTCACAACACATTATTGTAC
TACACCAGAAGTCAGTGGTACAGCCCACGCTGCCCAACGCGTCCCTTGTC
GACTGATCGCTTTCGTGTATTCATTCGAAGAACGACTTGGGGCATAGAGT
GCTCGTGCGGCAACTGAGAGAGGTGGACAAGGTCGGAGCGCCTCTTCTGT
TCCAGGCGGCATCGAGCAACAGCGTGAGGTGTCTCAAGGCGGTGCTCAAC
GTCCTCAAGACTGTCCTGGGAGTGGCGGGACTTGACGAACAGCTGCACGC
GGTCGATAGCAAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig741:210208..211272+

>mRNA_F-serratus_M_contig741.18676.1 ID=mRNA_F-serratus_M_contig741.18676.1|Name=mRNA_F-serratus_M_contig741.18676.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig741:210208..211272+ (Fucus serratus male)
GAAGCCCTCCAGGCGAAGTTCGTCGAGGATGGCCGAAATGTACTGATGCA
TGCCGCGGCGTGCGGGAGCAAACATGGTTTCGTCACATTGGTGGAAAACA
TCAGGGGAAAGGAAGCCCTCCAGGCGAAGTTCGTCGAGGATGGCCGAAAT
GTACTGATGCATGCCGCGGCGTGCGGGAGCAAACATGGTTTCGTCACATT
GGTGGAAAACATCAGGGGAAAGAACGACTTGGGGCATAGAGTGCTCGTGC
GGCAACTGAGAGAGGTGGACAAGGTCGGAGCGCCTCTTCTGTTCCAGGCG
GCATCGAGCAACAGCGTGAGGTGTCTCAAGGCGGTGCTCAACGTCCTCAA
GACTGTCCTGGGAGTGGCGGGACTTGACGAACAGCTGCACGCGGTCGATA
GCAAGAACGACTTGGGGCATAGAGTGCTCGTGCGGCAACTGAGAGAGGTG
GACAAGGTCGGAGCGCCTCTTCTGTTCCAGGCGGCATCGAGCAACAGCGT
GAGGTGTCTCAAGGCGGTGCTCAACGTCCTCAAGACTGTCCTGGGAGTGG
CGGGACTTGACGAACAGCTGCACGCGGTCGATAGCAAG
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