mRNA_F-serratus_M_contig741.18669.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig741.18669.1
Unique NamemRNA_F-serratus_M_contig741.18669.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig741.18669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig741contigF-serratus_M_contig741:14681..18946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size267
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig741.18669.1prot_F-serratus_M_contig741.18669.1Fucus serratus malepolypeptideF-serratus_M_contig741 14744..18922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932246.187245-UTR-F-serratus_M_contig741:14680..147431622932246.187245-UTR-F-serratus_M_contig741:14680..14743Fucus serratus maleUTRF-serratus_M_contig741 14681..14743 +
1690964216.476539-UTR-F-serratus_M_contig741:14680..147431690964216.476539-UTR-F-serratus_M_contig741:14680..14743Fucus serratus maleUTRF-serratus_M_contig741 14681..14743 +
1622932246.2277374-UTR-F-serratus_M_contig741:18922..189461622932246.2277374-UTR-F-serratus_M_contig741:18922..18946Fucus serratus maleUTRF-serratus_M_contig741 18923..18946 +
1690964216.5080516-UTR-F-serratus_M_contig741:18922..189461690964216.5080516-UTR-F-serratus_M_contig741:18922..18946Fucus serratus maleUTRF-serratus_M_contig741 18923..18946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932246.2007527-CDS-F-serratus_M_contig741:14743..148681622932246.2007527-CDS-F-serratus_M_contig741:14743..14868Fucus serratus maleCDSF-serratus_M_contig741 14744..14868 +
1690964216.4872768-CDS-F-serratus_M_contig741:14743..148681690964216.4872768-CDS-F-serratus_M_contig741:14743..14868Fucus serratus maleCDSF-serratus_M_contig741 14744..14868 +
1622932246.2151988-CDS-F-serratus_M_contig741:18867..189221622932246.2151988-CDS-F-serratus_M_contig741:18867..18922Fucus serratus maleCDSF-serratus_M_contig741 18868..18922 +
1690964216.499476-CDS-F-serratus_M_contig741:18867..189221690964216.499476-CDS-F-serratus_M_contig741:18867..18922Fucus serratus maleCDSF-serratus_M_contig741 18868..18922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig741.18669.1

>prot_F-serratus_M_contig741.18669.1 ID=prot_F-serratus_M_contig741.18669.1|Name=mRNA_F-serratus_M_contig741.18669.1|organism=Fucus serratus male|type=polypeptide|length=60bp
MHKEHQILCAVAWTSMERETQFLSACLLPPCVIAYCSASTSRLIGSTNIK
STKYRALET*
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mRNA from alignment at F-serratus_M_contig741:14681..18946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig741.18669.1 ID=mRNA_F-serratus_M_contig741.18669.1|Name=mRNA_F-serratus_M_contig741.18669.1|organism=Fucus serratus male|type=mRNA|length=4266bp|location=Sequence derived from alignment at F-serratus_M_contig741:14681..18946+ (Fucus serratus male)
TTTTGACAGGCGGATGCTTCTCCTTCTGTGTTTCTGGTTAAACGCGGAAC
CATAGCTGAGTCCATGCATAAGGAGCATCAGATTCTGTGTGCCGTAGCCT
GGACAAGTATGGAGCGTGAAACCCAGTTTCTTTCCGCTTGCCTCTTACCT
CCTTGTGTGATCGCCTACTGCTCTGCGTCTACTTCCAGGTGAATACGGGT
TCGAGTACGTGGATTATGTCCACATCATCTTTGTCCTCTGTTGTTCTCGT
TTTCAAACGTTGTTGTGGGTTTGTCTTTACTGCTTGATGATGTACTGTTT
TGTATTATTTGCTGTTTTTGTGGTGTCCCTGCATGGCGATTGATGTAAGT
GTACAGTATAACGGTTGGTTTCTCCCCGACATTATACTGTTGACCCAATG
TTATCTGCATTGGGGAACCCGTTCAAATGCCATGTAAGAGGTTTTGTATT
CGCAGCCTTTGATACCACCTGAACGTTTTGATTTTTTTCCCCCTACCGGG
GGCGGATCAGAAGGTCTAGGTGCATTCAGATTTTTCTTTAAACATTTACA
AAACGCACGATAAGGTTACAACTCAATTTGTTACCTTGGGTATAAGATCA
GATGGGTATCATCAATAAAGGAAGACATATTATATTACCAACTACAACTT
GCACCATAATAACTTGCATTGCTTAGATAGTTTTATTTCTTTCCATAAGA
ATCTGCCAGGTATATACTTTCAACATGCCCACTTCATGTACATACCAAAA
GTGGGTGTGGGAAAGAGAGGCGAAAATTAATTGGTCCATGGTGACCTGCC
AAGGCAGCACTCGTTAGGAACTACCTTGAGGTTTACTGGCTCCGTGCCGG
TGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGATAA
ACTCGAGACTGACCCGATAGCGTATTATGGCGGTTAAAAATGAATAAATG
GACGCCGCCGCGGAACTCGGGAGGAATCCCGTAATAAGCACCAGATTCAG
CCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGAGAGTGCCGAACCCG
CCTCACGAGACCAAATTCTCAGGCACGAACGCAGACAGGGAAATGATATT
TTTCCTGTTCAGCTGACCACGTGCAGGACTGGCAACCTTACCCGTTTGAT
CCATACTCTTGCTATACCTGGTATGTGTGACCACACATAGTGTTAGATCG
GCAGTAGTCGCCGGTGGTTCAATAATGCAAGTGTACAGTATAACGGTGGG
TTTCTCCCCGACATGATACAGCTGACCCTATGTTACTACCATCGGGGAAC
CCGACTGAATTCCATGAATAGGTTTTGCCTTTGCAGCCTATTTTCCCCCT
TGGCTGGGGATGCTCCAAAGGTTTATATTTCTACGTCAACACGTTTTTCT
TTTTTGTAGCGACCTGCGAGGCGGTTTTATTTCGGGATAGCGGAGTTGTC
GTTGGAAATTTTGCGAGCTTGGCTCGCGCAGTATATTTTTCTCGCGCCCT
GTTCGTGTTCGCGACAGGTTTTTACTTACTTTTACCCTAGACTCGAACTT
GATCCAAGCTTTGGAGCTGTGCAGACAGGGAGACCCGTCGAAAGTAGAGA
AAGGTCCACTGTCCACTTCAATTTTTTTCGATCGGCTCAAAGTTTTTGGT
AAGTGGTGGATGAATTTGCCCCAGAGATGGTGAAAAACAGTGGTGTCGTT
ATGCTGGCGACGTCTTTTTTCTTCTTTTCGTCAGCTTTCCCCTCGGAGAT
GAGGTGTGCGCATCAGTATGTAGAGGACTTGCTTTTGATATTGTGAGCCA
TCACAAGATTGCCTTTCCTGTGGGTGTTTTATCGATCTGATCATGCTGAA
AAGCTTCAATACCGCTCCTGGCGCGCAGCAGCAGTTCTGAGCTAGTTCGA
GTAGTTTCAGACGCGAAAGGACCCCTTAGGATACTACCGCACTCTAAATG
TACAAGTAGCACAGGACGTAGATTGAGCTATACCTTTTGTATGTAGATTT
TGTAATATGCTACATGCAACGTTCAACATCTAAAATTATCTTCACCCTGT
GGAGGGTCAAAGTCGCGAGCTGCGATGACCGTCAGCGTATGATTTAACCA
AGTGTGACCTCTCACTTTACAAATATTAATACCGCCTGCGCATTCGCTAT
TAATGGTGCCGAAGAGCGGCTGCTGACTATACAGAAGAATCCAGTCAGTT
TCGTGATTCATCACGTAAAATAATCATTTTCTACTACTGTTGTACAGTAC
CTGACACCACTCGTAGCATGTACTTACGCAACAGTCAGTTTTGTGAGCTG
TGAGTGAATTCCAAAGCCACATTTCGTTCCCTGCGTACTAAAATACAAGT
ACAGTGCTTACGGTATGATTGCGGAGTACGTCGTCGTACCACAGAGTACC
CAACACTCCGCAGGTGATTGAAATTCGCACAGATCGCGTTCCTGACTAGC
CAACCAGCCGTGTGTGTGTGTGTGTGTGTGTATTTATCAAATTGCACATA
ACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTG
ACTGTGTGTGTGTGTGTGTGTGTGTATGTATGGTCACACATACAGCAAGA
GTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAAC
GGGGAAGATAATATGATATTCCGTTCGTGCCTGAGAATTTGGTCTCGCGA
GACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCA
GGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGC
GTCCATATATTTATATTAAACCGCCATACGCCACCAGGTAAGTCCCGAAT
TATCGGGTCACGCAATTGCGTAACGATGGCGTTCACTGCCGAGAGTTCGT
CGGCACAGGGCCAGTAAACCTTAAGGTAGTTCCGAACGAGTGCTGCCTTA
GCAGGTCACCCAGGGACCAATTAATATACGCCTCTCTTTCCCACACCCAC
TATTGGTATTAAGTGGGCATGTTGAAAGTAGCGTGTGTTTTTAAAGAAAA
TCAGAACAGCACCTAGACCTTTTGAGCATCCCCCGGTTAGAGGGGAAAAA
ATGTCAAAACGTTCAAGTTCGTTGGACGTACCAGCCAGGGTCACACAAGA
TTTCTCATCCACCTTCCTTCTGCGGTGCACGTGCCTTAATTTTTCTCGCG
AAAAGGGTTCAGCCGTTCCTTTCCCTCATCGACCGTGAACTCGAATTTTG
TGTACTAACGATTTAATCCGTTCTCCACTCGTTAGACATTTTTATTTTAG
TTTTGGTTTTTAGTGAGGAATAACCCGTTTGCCGGGATCGAACTCACGTC
CCAACGTGTCAGAAGGTTACGAGGTTACCTCTGAGCTACCGGGGCGAAAT
ATATGCTTTCCAGCAATAACAGCAGTACAGTACATACATTTATCAGCTGC
TATTTAGAAACTTCGTCAGAAACGACGAAAACATGCTGTGCTTATCTGGC
CCCACTCCCTACTAAATACTGGAGACACTCTGGCTCGAGTCGTCGATCAG
CGGCTTGTTAGCCACGTTTCGCGACACAAACGCATAGCTTGCCGCCCCGC
GCAAGATTCCTGCCTTCGCCGCGTGCGAAGCCCTCTCGATTTTGCCGTTG
GATGAAGTGTCAACCCCACGCCCGAGCAGCAGTCGGCACTTGACGTGACG
TGACGTGACGTTGGATACTGACGACGAAAACCTTTCTGCTACAGTACAGT
ACAGTACAGTACAGTACAGTACAGTACACGTTACACCGAAAACGTATCAA
GAGACGGAGAGTAATCAAAAGGTTAACCAAAAGCCGCCTATTTAGTCTAG
TAGGCTAGCAGGGGTGATGGGCCTCCGACAGCAAAACAACTCGAAACACA
GCAATATTTTGCGCTTCGGGCCCCATCCCACACTACTAATAGTAACATCT
AAGCGGATGGTGCAGGCATACTGCATGGTCATCACCAATAGCAGAGAGTA
TGGATCAACCGGGTAAGGTTACCAATCCTGTTCGTGGTCGGCCATCGAAG
TTGTGTTCGTGCCAATTTCGTCTTTCTCTGTCTCAGTATTACTATGGTAC
TAGTACTATTAATACTTATAATACGATGTTCTACCTTGTGCCGCAAGAGC
TGAGCCCATTTCTAATGCCCCTCCGTGTTGGCAACAGACTCATCGGTAGT
ACTAACATTAAAAGTACCAAGTATCGGGCCTTGGAGACCTGAAATCTCCG
GAGAATGAAAGGGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig741:14681..18946+

>mRNA_F-serratus_M_contig741.18669.1 ID=mRNA_F-serratus_M_contig741.18669.1|Name=mRNA_F-serratus_M_contig741.18669.1|organism=Fucus serratus male|type=CDS|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig741:14681..18946+ (Fucus serratus male)
ATGCATAAGGAGCATCAGATTCTGTGTGCCGTAGCCTGGACAAGTATGGA
GCGTGAAACCCAGTTTCTTTCCGCTTGCCTCTTACCTCCTTGTGTGATCG
CCTACTGCTCTGCGTCTACTTCCAGATGCATAAGGAGCATCAGATTCTGT
GTGCCGTAGCCTGGACAAGTATGGAGCGTGAAACCCAGTTTCTTTCCGCT
TGCCTCTTACCTCCTTGTGTGATCGCCTACTGCTCTGCGTCTACTTCCAG
ACTCATCGGTAGTACTAACATTAAAAGTACCAAGTATCGGGCCTTGGAGA
CCTGAACTCATCGGTAGTACTAACATTAAAAGTACCAAGTATCGGGCCTT
GGAGACCTGA
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