mRNA_F-serratus_M_contig7403.18667.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7403.18667.1
Unique NamemRNA_F-serratus_M_contig7403.18667.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7403.18667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7403contigF-serratus_M_contig7403:14542..17332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size254
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7403.18667.1prot_F-serratus_M_contig7403.18667.1Fucus serratus malepolypeptideF-serratus_M_contig7403 14542..17330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932245.1346173-CDS-F-serratus_M_contig7403:14541..146201622932245.1346173-CDS-F-serratus_M_contig7403:14541..14620Fucus serratus maleCDSF-serratus_M_contig7403 14542..14620 +
1690964216.2727358-CDS-F-serratus_M_contig7403:14541..146201690964216.2727358-CDS-F-serratus_M_contig7403:14541..14620Fucus serratus maleCDSF-serratus_M_contig7403 14542..14620 +
1622932245.1519306-CDS-F-serratus_M_contig7403:15231..153291622932245.1519306-CDS-F-serratus_M_contig7403:15231..15329Fucus serratus maleCDSF-serratus_M_contig7403 15232..15329 +
1690964216.2815263-CDS-F-serratus_M_contig7403:15231..153291690964216.2815263-CDS-F-serratus_M_contig7403:15231..15329Fucus serratus maleCDSF-serratus_M_contig7403 15232..15329 +
1622932245.1652122-CDS-F-serratus_M_contig7403:17255..173301622932245.1652122-CDS-F-serratus_M_contig7403:17255..17330Fucus serratus maleCDSF-serratus_M_contig7403 17256..17330 +
1690964216.2907028-CDS-F-serratus_M_contig7403:17255..173301690964216.2907028-CDS-F-serratus_M_contig7403:17255..17330Fucus serratus maleCDSF-serratus_M_contig7403 17256..17330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7403.18667.1

>prot_F-serratus_M_contig7403.18667.1 ID=prot_F-serratus_M_contig7403.18667.1|Name=mRNA_F-serratus_M_contig7403.18667.1|organism=Fucus serratus male|type=polypeptide|length=84bp
ELRPRRSPRGHGDSIMPSCAKGEGRRKASRRKSTKSVGNSCMLLLPCWRT
VLASPTELVKSLEPPLHMRRVLLQRLPSPQLSPQ
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mRNA from alignment at F-serratus_M_contig7403:14542..17332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7403.18667.1 ID=mRNA_F-serratus_M_contig7403.18667.1|Name=mRNA_F-serratus_M_contig7403.18667.1|organism=Fucus serratus male|type=mRNA|length=2791bp|location=Sequence derived from alignment at F-serratus_M_contig7403:14542..17332+ (Fucus serratus male)
GAGCTGCGGCCAAGGCGTTCTCCGAGAGGACACGGCGACAGCATAATGCC
AAGTTGCGCAAAAGGAGAGGGCCGCCGAAGTAAGCTCAAGTGTTGTTGCG
CATCGACGCGGCTTGTCTTGCCCATTCGTCCGATCCGATGGGGGGTGCAC
AAATAGTCTAATAAAATGACTATGAAGAGACTAGATCTACAGCACATGTG
TTGATAATATCAGTAGGGCTTGTGTTTTCTCTCTTTGCTTTATCCGCCTG
AATCCCACAACCTTAATACCATATTATTAGTAGTATATTAATATTAATAG
CACCTTTACAAGTAGTCCGTCGGTATGGAAACGGTGGGTCTGTCTCTCCC
CGGTATTATATATTATATATTACCAGGGTATATGTTACACTGTTGACCCT
ACAAGTATGCAACCACCTACCGGTATATAACATGGAGAAACTCAACTAAA
AACCCATGTTGAGTCTTGGCTCGAGTCAGCCAATATTCCCAACACTAATG
CTATGCTTTTGAACATTTATATCGGACACAGCTCCCCCGGTGGTGGGAAA
GCTCGAAATGGTTTTAGATACGAGTACTTCAGATTGTTTCCACGGACACC
AGCTGTTTTTCAACCAGATCGTACGAATGCTGTACAGCGGTATATTGCTA
CAGTATTGATATTTATAAACCGTTGTGCTTGTTTTGGCAGAGGCATCAAG
AAGAAAATCGACGAAGAGCGTGGGGAACAGCTGCATGCTGCTGTTACCTT
GCTGGAGGACAGTGCTCGCCTCGCCAACAGAGCTCGTGGTAAGACTGCGG
TTGGTAGTGTATTCCTATTACAGCAGTACTGCTGTATCATGATATCAATT
TCAACATCCCACCGTTTTTTTATTACACCTATTAAAAAGTGTACCTGCCC
CTGTCTGTAGTATTATACTTGAAATGTTACTAAATACTCTAATCCATTGA
TCATATACCTGGTAAGTAACTATTAATAGTGTATGCATGTATGTATGTAT
GTATGTATATGAATTAAATTGCACATAACCGCGCAATCCGGCTCTGTCAT
CCTATTATAGTCATTCTACGCCACTCGTATTGATCCTCCCAAGGGGGTAT
CAGTAATACTTACCTATTACGAAAACCTGTATGTAAGTATGTATGTATGT
ATGTATGTATAGTCATCACATATAGCAGAATATGGATCAACCGGGTAAGG
TTGCCAATCCTGCTCGTGGTACGTGTCTGAGAATTTGGTCTCGCGAGAGA
CGGGTTCGGCAATTGCGTCCCGCGTCAGCCTGCTCATCTCCATTCTCAGG
CTGAATCTGGTGCTTACTCACGGGGTTCTTCCCGATTTCCGCGGCGGCGT
CCATTTATTTATTTAAAGCGCCATACGCCATCGAGTCAGTACCGAGTTTA
TCGGGTCACGCAATTGCGTACCGATAGCGTTCACTGTCGAGAGTCCGCAT
GCACAGGGTCAGTAGTCCTCGAGTTAGTTCCAGTAACGGGTGCTGCGATT
TTGCAAGTCACCATGGACTATGACCTATTAATTAATATACGCCTCTCTTT
TCCCACACCCACTATACTATACTATTAGTACTATTAGTGGTATGAAGTGT
GCATGTCATGTTTATAATACAGCGGTACCGGTACAGAGTATAGTAGTACG
ATTACGATCGGTGATACTATGAATTCTTGGTTTGGTTGAAATGCCAATAC
TGTACAACAGTTTAGTTGAAAGAAGAATCTGAATGCACCTAGACCTTCTG
ATTTAGTTCTGATTTAGTTCTTGAATGTTGTACATCATGGGTGTAAGTAC
GTATGGTCATCGCATATACTGTAGCAATAGTAACGATCAACCAGGTAAGG
TTGCTAATCCTGCTCGTGATCAGCTGAAAAGGGAAAATTAAGATTCCCCT
GTCCCCGTTCGCGTCCGAGAATTTGGTCTCGCGAGAGACGGGTTCGGCAG
TTCCGTCCCGCGTGAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTG
CTTACTCACGGGGTTCTTCCCGATTTCCGCGGCGGCGTCCATATATTTAT
TTAAACCGCCATACGTCATCGGGTCAGTCCCTAATTTATCGGATCACGCA
ATAGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACGGGGTCAG
TAAACCTCAATGTAGTTCCAGTAACGGGTGCTGCCTCGGCAGGTCACCAT
GGATCAATTAAATATGTGTGTGTGTGGTGATCCCATCCCATTTATGCTGT
ACGTCACACAAGAGGAAAGTCACACAGGATTCCTCCACCTTATTTCTTAC
CAGGTACGTCTTTGCCTTGATCTTTTGTTGCGAGAAGGATTCAGCCGTGC
CTTTCACTCGTCGACCGTGAAGTCGAATTTTCCGGTCGTCCCGGTGGTTC
AGTTGGTAACTTCTAAACCTTGACATTGGGACATGAGTTCGAATCTCGGC
GCTGTCACACGAACTGTGATTTTTTCTCACATCATGCCCAACAAGTGGAG
AACGATTGTTTTGTGGGTAATGTACACCATATTCGACAATTAAGAAGCGC
CTCTCTGCCCCACACCCACTGTTATCAAGTGGGAATGTTGAAAGTACCGG
CGTATCGTGCCTGGTGTATAATACCCACTTGTTATTATTACCTGGTAATT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTATGAAAACATGTACCTGAA
ATGTCTTTTTGCAGAAATCCTTGGAGCCGCCCCTTCACATGAGGAGGGTG
CTCCTTCAGAGGCTGCCTTCGCCGCAGCTGTCGCCGCAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7403:14542..17332+

>mRNA_F-serratus_M_contig7403.18667.1 ID=mRNA_F-serratus_M_contig7403.18667.1|Name=mRNA_F-serratus_M_contig7403.18667.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig7403:14542..17332+ (Fucus serratus male)
GAGCTGCGGCCAAGGCGTTCTCCGAGAGGACACGGCGACAGCATAATGCC
AAGTTGCGCAAAAGGAGAGGGCCGCCGAAGAGCTGCGGCCAAGGCGTTCT
CCGAGAGGACACGGCGACAGCATAATGCCAAGTTGCGCAAAAGGAGAGGG
CCGCCGAAAGGCATCAAGAAGAAAATCGACGAAGAGCGTGGGGAACAGCT
GCATGCTGCTGTTACCTTGCTGGAGGACAGTGCTCGCCTCGCCAACAGAG
CTCGTGAGGCATCAAGAAGAAAATCGACGAAGAGCGTGGGGAACAGCTGC
ATGCTGCTGTTACCTTGCTGGAGGACAGTGCTCGCCTCGCCAACAGAGCT
CGTGAAATCCTTGGAGCCGCCCCTTCACATGAGGAGGGTGCTCCTTCAGA
GGCTGCCTTCGCCGCAGCTGTCGCCGCAGAAATCCTTGGAGCCGCCCCTT
CACATGAGGAGGGTGCTCCTTCAGAGGCTGCCTTCGCCGCAGCTGTCGCC
GCAG
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