mRNA_F-serratus_M_contig74.18655.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A6H5L9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S0_9PHAE) HSP 1 Score: 214 bits (544), Expect = 1.660e-64 Identity = 116/156 (74.36%), Postives = 123/156 (78.85%), Query Frame = 1
Query: 106 MGK--GKK-GGSVKCGGGGASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPR-DGET----CFFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPHERERYTLDRCSLQAKFLFAPKPSTSCNP 549
MGK GKK GG GGGG F DVDPR VRYAHSKIKP FSGCGRTIEQTL EIR G+T+PSDLPMITVL+ P DP DGE CFFSLNNRRLFVFKACREEGLLG G +RVRARA+K HERERYT+DRCSLQAKFLFAPKP T+ P
Sbjct: 1 MGKKAGKKSGGGTAIGGGG---FSMLDVDPRHVRYAHSKIKPHFSGCGRTIEQTLGEIREGKTRPSDLPMITVLLRPPDPVVDGEQQQQQCFFSLNNRRLFVFKACREEGLLGPSGLVRVRARALKAHERERYTVDRCSLQAKFLFAPKPETAAGP 153
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A835ZB41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB41_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.000e-43 Identity = 71/121 (58.68%), Postives = 95/121 (78.51%), Query Frame = 1
Query: 154 ASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPHERERYTLDRCSLQAKFL 516
A+ F D+DP R+R+AHSKI+PVFSGCGR+++ TL EIR+G TK +DLP+ITV+ GP++ G + +FSLNNRRL+VFKAC+ EGLLG +G+++VR R K HE ERYTL+RCS A +
Sbjct: 41 ATTFVHMDIDPDRIRFAHSKIRPVFSGCGRSLQTTLEEIRSGATKITDLPVITVIEGPSE--HGSSWYFSLNNRRLWVFKACKREGLLGGEGTVKVRVRGPKDHELERYTLERCSNTATLM 159
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A9UYH0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UYH0_MONBE) HSP 1 Score: 152 bits (384), Expect = 8.090e-43 Identity = 80/161 (49.69%), Postives = 107/161 (66.46%), Query Frame = 1
Query: 112 KGKKGGSVKCGGGGASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPHERERYTLDRCSLQAKFLFAPKPSTSCNPSDGVAGSDTSGTAGK 594
+GK G K AS F T DVDPR++R+AH++IKP+FSGCGRT+ QTL E+R+G TK +D+P +TV+V P D ++SLNNRRL+VFK REEG+L + I VR R MKPHE RYT D C+LQAKFLF + + + ++ G D +G+
Sbjct: 47 RGKGAGGRKA----ASGFTTADVDPRQIRFAHARIKPMFSGCGRTLAQTLEELRDGTTKVTDIPTVTVMVRPDDDPTLPAWYYSLNNRRLYVFKQLREEGILDT---IPVRVRGMKPHEVARYTPDNCALQAKFLFKERAAGADGQAEAERGQDEGAGSGE 200
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A7S2A608_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A608_TRICV) HSP 1 Score: 138 bits (347), Expect = 1.130e-37 Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1
Query: 169 TTDVDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPH-ERERYTLDRCSLQAKFL 516
T VDPRR+R+ +S+I+P FSGCGR+++ TL IRNGE P DLP I VLVGP +FSLNNRRL+V K CREEGLLG D IRVR R K ERERY+++RC+L+AKF+
Sbjct: 11 TIRVDPRRIRFQYSRIRPHFSGCGRSVQGTLESIRNGEIGPGDLPPIQVLVGPEAEDGSGRWYFSLNNRRLWVLKRCREEGLLGGDNLIRVRVRDPKSAAERERYSVERCALEAKFI 127
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: B8LD96_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD96_THAPS) HSP 1 Score: 119 bits (299), Expect = 5.670e-30 Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 178 VDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGS---DGSIRVRARAMKPH-ERERYTLDRCSLQAKFL 516
+DP RVR+ HS+I+P FSGCGR++ +TL EIR G+ KP+DLP I VL+GP +FSLNNRRL+V K C +EGLL + + +I VR R K E ERY++D C+L+AKF+
Sbjct: 43 IDPSRVRFQHSRIRPHFSGCGRSVVETLDEIRRGDLKPADLPPIQVLIGPEGNDGLGPWYFSLNNRRLWVLKQCYKEGLLNNSTYNNTIPVRVRLPKSDAELERYSVDNCALEAKFM 159
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A7S4SSK4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSK4_9STRA) HSP 1 Score: 116 bits (291), Expect = 8.980e-29 Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query: 178 VDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETC---FFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPH---ERERYTLDRCSLQAKFL 516
VDP+ +R+ HS+I+P FSGCGR++ T+ +IRNG+ P+DLP I V+VG +FSLNNRRL++FK CREEGLL R++ R P E +RYT++ C+L+AKF+
Sbjct: 29 VDPKLIRFQHSRIRPYFSGCGRSVSDTMEQIRNGDVSPNDLPTIQVIVGQXXXXXXXXXMPWYFSLNNRRLWIFKKCREEGLLQHPHVNRIKVRIKVPKSQTELQRYTVENCALEAKFI 147
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: K0SIP0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIP0_THAOC) HSP 1 Score: 116 bits (290), Expect = 1.600e-27 Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 178 VDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGE-TCFFSLNNRRLFVFKACREEGLLGSD---GSIRVRARAMKPH-ERERYTLDRCSLQAKFLFAPKP 531
V P RVRY HS+I+P FSGCGR++ TL EIR G +PS LP I VLVGP D DG +FSLNNRRL+V K C EGLL ++ I+VR R K ERERY++ CSL AKF+ +P
Sbjct: 174 VCPTRVRYQHSRIRPHFSGCGRSVVGTLDEIRGGRLEPSALPPIQVLVGP-DGDDGMGPWYFSLNNRRLWVLKQCHREGLLDNERYGNMIQVRVRVPKSDSERERYSVKNCSLDAKFMREGRP 295
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A1E7FEU0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU0_9STRA) HSP 1 Score: 112 bits (280), Expect = 6.790e-27 Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 178 VDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGP-ADPRDGETCFFSLNNRRLFVFKACREEGLLGSDGS-IRVRARAMKPH-ERERYTLDRCSLQAKFLFAPKPSTSCNPSDGVAGSDTS 579
VDP R R+ HSKI+PVFSGCGR + Q L +I++G+T DLP I VLVG +D DG +FSLNNRRL++ K R G L G+ ++VR R K ERERY++ C+L AK + KP + VA ++ S
Sbjct: 34 VDPARCRFQHSKIRPVFSGCGRDVTQVLEDIKSGKTDLQDLPPIQVLVGDYSDDEDGSIWYFSLNNRRLWILKQLRAGGYLEKQGNKVKVRVRRPKSQSERERYSIANCALNAKIMVE-KPRKKKEKTSAVAATNKS 169
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A6B2LQW6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQW6_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 4.050e-21 Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 193 VRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPHERERYTLDRCSLQAKFL 516
+R+ HSKIKP+FS GRT+E TL+EI G+ KP +LP I V +D +T +FS+NNRRL+VFK CR+ GLL R+R ++ R+T +RC+L AKF+
Sbjct: 2 IRFTHSKIKPIFSD-GRTVEGTLSEISEGKLKPENLPKIVV-----HKQDDKT-YFSMNNRRLWVFKECRKRGLLEKVPE-RIRPMPTNKRQKNRFTTERCALNAKFM 101
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Match: A0A0A1TN86_9HYPO (Uncharacterized protein n=1 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1TN86_9HYPO) HSP 1 Score: 90.9 bits (224), Expect = 6.710e-20 Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 1
Query: 172 TDVDPRRVRYAHSKIKPVFSGCGRTIEQTLTEIRNGETKPSDLPMITVLVGPADPRDGETCFFSLNNRRLFVFKACREEGLLGSDGSIRVRARAMKPHER--ERYTLDRCSLQAKFLFAPKPSTSCNPSDGVAGSDTSG 582
T VDP+ V + S+++P FS CGR IE TL IRN E + DLP I+VL+ DP G+ FSLNNRRLFVFK + EGLL + + VR + + +R ++YT D+C A+ + + + +P+ + G+++ G
Sbjct: 4 TRVDPKDVYFTFSRLRPKFS-CGRRIEDTLNAIRNKELRAEDLPPISVLL---DPTTGD--MFSLNNRRLFVFKTLQAEGLLET---VPVRTKPVPQTKRMKDKYTSDKCVKMARLMAEREAVEALDPNTTIEGTNSDG 133 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig74.18655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig74.18655.1 >prot_F-serratus_M_contig74.18655.1 ID=prot_F-serratus_M_contig74.18655.1|Name=mRNA_F-serratus_M_contig74.18655.1|organism=Fucus serratus male|type=polypeptide|length=169bp MGKGKKGGSVKCGGGGASEFFTTDVDPRRVRYAHSKIKPVFSGCGRTIEQback to top mRNA from alignment at F-serratus_M_contig74:832029..837472- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig74.18655.1 ID=mRNA_F-serratus_M_contig74.18655.1|Name=mRNA_F-serratus_M_contig74.18655.1|organism=Fucus serratus male|type=mRNA|length=5444bp|location=Sequence derived from alignment at F-serratus_M_contig74:832029..837472- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig74:832029..837472- >mRNA_F-serratus_M_contig74.18655.1 ID=mRNA_F-serratus_M_contig74.18655.1|Name=mRNA_F-serratus_M_contig74.18655.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig74:832029..837472- (Fucus serratus male)back to top |