mRNA_F-serratus_M_contig74.18651.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig74.18651.1
Unique NamemRNA_F-serratus_M_contig74.18651.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig74.18651.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.680e-40
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    1 LRTVLRRPVAPLAV-IRRYMSGDAEHAAEEMGKWKKMTAGMGVLTVIVTAYVVATEEHHHKDEDAPVPSHLQIRNKPFPWTCAGCSLLDLECFKKCKEDRE 300
            +R  +RRP A  A   RR MSGDA HAAEEM KWKKMTAGMGVL++ VT  V+ATEEHHH+DEDAP+PS+++IRNKP PW CA C+LLD  CF KCK +RE
Sbjct:    6 VRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAERE 106
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig74.18651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU0_ECTSI1.680e-4067.33Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig74contigF-serratus_M_contig74:578578..580576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.2e-30
Seed eggNOG ortholog2880.D7FHU0
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categoryother localisation
EggNOG OGs2BY4U@1,2SBT1@2759
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons4
Model size1059
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig74.18651.1prot_F-serratus_M_contig74.18651.1Fucus serratus malepolypeptideF-serratus_M_contig74 579356..580522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932242.684593-UTR-F-serratus_M_contig74:578577..5790761622932242.684593-UTR-F-serratus_M_contig74:578577..579076Fucus serratus maleUTRF-serratus_M_contig74 578578..579076 -
1690964215.1080697-UTR-F-serratus_M_contig74:578577..5790761690964215.1080697-UTR-F-serratus_M_contig74:578577..579076Fucus serratus maleUTRF-serratus_M_contig74 578578..579076 -
1622932242.7034054-UTR-F-serratus_M_contig74:579101..5793551622932242.7034054-UTR-F-serratus_M_contig74:579101..579355Fucus serratus maleUTRF-serratus_M_contig74 579102..579355 -
1690964215.1270587-UTR-F-serratus_M_contig74:579101..5793551690964215.1270587-UTR-F-serratus_M_contig74:579101..579355Fucus serratus maleUTRF-serratus_M_contig74 579102..579355 -
1622932242.8117235-UTR-F-serratus_M_contig74:580522..5805761622932242.8117235-UTR-F-serratus_M_contig74:580522..580576Fucus serratus maleUTRF-serratus_M_contig74 580523..580576 -
1690964215.173836-UTR-F-serratus_M_contig74:580522..5805761690964215.173836-UTR-F-serratus_M_contig74:580522..580576Fucus serratus maleUTRF-serratus_M_contig74 580523..580576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932242.7213523-CDS-F-serratus_M_contig74:579355..5794631622932242.7213523-CDS-F-serratus_M_contig74:579355..579463Fucus serratus maleCDSF-serratus_M_contig74 579356..579463 -
1690964215.1430225-CDS-F-serratus_M_contig74:579355..5794631690964215.1430225-CDS-F-serratus_M_contig74:579355..579463Fucus serratus maleCDSF-serratus_M_contig74 579356..579463 -
1622932242.736655-CDS-F-serratus_M_contig74:579970..5800861622932242.736655-CDS-F-serratus_M_contig74:579970..580086Fucus serratus maleCDSF-serratus_M_contig74 579971..580086 -
1690964215.1516774-CDS-F-serratus_M_contig74:579970..5800861690964215.1516774-CDS-F-serratus_M_contig74:579970..580086Fucus serratus maleCDSF-serratus_M_contig74 579971..580086 -
1622932242.7574537-CDS-F-serratus_M_contig74:580494..5805221622932242.7574537-CDS-F-serratus_M_contig74:580494..580522Fucus serratus maleCDSF-serratus_M_contig74 580495..580522 -
1690964215.1631186-CDS-F-serratus_M_contig74:580494..5805221690964215.1631186-CDS-F-serratus_M_contig74:580494..580522Fucus serratus maleCDSF-serratus_M_contig74 580495..580522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig74.18651.1

>prot_F-serratus_M_contig74.18651.1 ID=prot_F-serratus_M_contig74.18651.1|Name=mRNA_F-serratus_M_contig74.18651.1|organism=Fucus serratus male|type=polypeptide|length=84bp
MSGDAEHAAEEMGKWKKMTAGMGVLTVIVTAYVVATEEHHHKDEDAPVPS
HLQIRNKPFPWTCAGCSLLDLECFKKCKEDREL*
back to top

mRNA from alignment at F-serratus_M_contig74:578578..580576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig74.18651.1 ID=mRNA_F-serratus_M_contig74.18651.1|Name=mRNA_F-serratus_M_contig74.18651.1|organism=Fucus serratus male|type=mRNA|length=1999bp|location=Sequence derived from alignment at F-serratus_M_contig74:578578..580576- (Fucus serratus male)
CTACGGACGGTGCTCCGACGACCGGTTGCGCCACTTGCCGTTATCCGCCG
CTACATGTCTGGCGATGCCGAGCATGCCGCGGGTGAGCAACGTTGTATAG
GATCTCCGCGGGTTGAGTCGGTCGTGTACGGAGCGCCGTCGCATGCACAC
AGAACCCTTGCGATACTGATCTTGTTGTGAAGAGTATTTATTACCGTAAA
TTGCATATATAACCGCGCAATCCGGCCCTGTCATACTAACCGTTGTGTGT
TTTTTGTGTATGTGCTTCGTCGTAATTTGAGTGGCTAATAAAGCGGTCAA
ACCTAAACGATCGAACGCTAACAAGAAGTATGATGGATCACCCCTTAACA
GCACCTCTTGAAGGCGTTCGCTGAGGCTTGTGAGGGTGGCCAATCTCGCG
AACTCACTCTGACCGCCCGACGACGAGACACTTTTAACAAGACTACTCCG
GATCCGCCCCCGCGTTGTGGTTTTGGCCCTGGTTTTCTAGAGGAGATGGG
CAAGTGGAAAAAAATGACTGCGGGGATGGGGGTGCTGACGGTGATCGTGA
CGGCCTACGTCGTCGCGACGGAGGAGCACCACCACAAGGACGAGGACGCG
CCGGTGGTGAGCCTCTCTAATGATCCCCTTTGGGTTTCCGTAAAACTTGT
CGGCGTGCGCGCTTTGAGAGTGCGCCGTGATTCAGCGACCGGCCGAGCGG
AACGTGTCCTATGGCGTACTATTGCAGCAGTATCATACGCCATTTTGTAT
GACCCCTGGAGTTCTACCGGCACCGTGGGCGGGATCAAGCGCAGCATCAA
ATAAGTGCCACGGCCTGTAACGTTTGGTGAACCTCACCACAAATCAAGGA
AAGAGCGCGGGTGGACGCGCGTTCCAGTCTACGCCCTTACCAGACTAAGC
GCTTTTTCCTTCCCACAAGGGCGGGCCACGCCCCCCCCCCCGCTCCCTTC
GCCCCTTCTCTTGTCCTTTATCTCTATATAACTCCCAAATTACTCGCGGA
TGTCGCCGTCGTGGCGCTTTTACATGACATTAATAACTTTGCCCCCTTTT
TTCCCCACTCTGTTGTGTGGGGTCTTGCGGGGGGATCCCTGATATTGTTG
TGTTGCCCCACAGCCCTCGCACTTGCAGATTCGCAACAAACCGTTCCCTT
GGACTTGCGCTGGATGCTCTCTCCTGGACCTCGAGTGCTTCAAGAAGTGC
AAGGAAGATCGCGAACTATAAAGTAGAGACATCGTGAGCAGTGGCCTCCT
CTGCGCCCGTGGAACTCCCCCCTCCCCCCCTCCCATGCTCGGCGATTTCG
GTGGAGAGTCTGAAGGGACGCGCGGAGGAAGCCCTTGGAGATGATTCCTC
GCCACGGCTTTCGGTTCTCGTCCGCTGTCGTTGGTCGTTTAAGTAGCGAA
AGAGGGAAATGTGCCACAGCGATCGCTTTTGTACCTTTCGCCTCGAAAGC
GGAGGATCGTGGTCCAACTTGTTGCTCTAGCCTCAAAAGAGAACGGGCGC
GTTCCACGGCAACGATGGGTAATCCCACGTTGGAACGCAAGAAGACGTGG
GCGCGTTGCTAGTGAGAGTCTATTTTACTGGTACACGTTGGTGCACGAAT
TCTAAGCCAGCAAAGGCCGTTTGTGTTTTTCATAATTGGGAACGTGCATT
TTCTCAACCTTTAAACGCTTACTGTTAGTTTTTTTCGTTGATTGTCTTGA
AGCCGTCGCTCCAGCCGTTTTCCGCACTTTTTTTTTCAAGTCAATCCATG
CGGTCGGTTGGCACACTTTATGATCGGGTGCACTCGTGAAAAACTCAGGC
AAAGAGGAAGGTCATGCCTTTGGACGAGCCCTAACCAGCCAGACACGCCG
CCGACATTTTATGAGAGGGCAGCGCATGACCCTGTGTGTTTTTGGCCAAG
TTTCGAAAATACCAACATATCATTTCCAATTTCGCCGCAAGTGAAAAGTA
CTAAAATACTAATAAAAAGAGCCATACTGTAACGACGTCCTTCCTTATG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig74:578578..580576-

>mRNA_F-serratus_M_contig74.18651.1 ID=mRNA_F-serratus_M_contig74.18651.1|Name=mRNA_F-serratus_M_contig74.18651.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig74:578578..580576- (Fucus serratus male)
ATGTCTGGCGATGCCGAGCATGCCGCGGATGTCTGGCGATGCCGAGCATG
CCGCGGAGGAGATGGGCAAGTGGAAAAAAATGACTGCGGGGATGGGGGTG
CTGACGGTGATCGTGACGGCCTACGTCGTCGCGACGGAGGAGCACCACCA
CAAGGACGAGGACGCGCCGGTGAGGAGATGGGCAAGTGGAAAAAAATGAC
TGCGGGGATGGGGGTGCTGACGGTGATCGTGACGGCCTACGTCGTCGCGA
CGGAGGAGCACCACCACAAGGACGAGGACGCGCCGGTGCCCTCGCACTTG
CAGATTCGCAACAAACCGTTCCCTTGGACTTGCGCTGGATGCTCTCTCCT
GGACCTCGAGTGCTTCAAGAAGTGCAAGGAAGATCGCGAACTATAACCCT
CGCACTTGCAGATTCGCAACAAACCGTTCCCTTGGACTTGCGCTGGATGC
TCTCTCCTGGACCTCGAGTGCTTCAAGAAGTGCAAGGAAGATCGCGAACT
ATAA
back to top