mRNA_F-serratus_M_contig738.18630.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig738.18630.1
Unique NamemRNA_F-serratus_M_contig738.18630.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: D7FPJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.500e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGGRVSSPYMAPGGQQQQQPSAISEALQLLPL 174
            V+LKSGLD+ARS+IQQ CVDIIRASRGGG  SSPYMA G QQQ  P+AISEA+QLLPL
Sbjct:  657 VSLKSGLDSARSKIQQTCVDIIRASRGGGYGSSPYMAAGAQQQ--PTAISEAIQLLPL 712
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.020e-8
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGGRVSSPYMAPGGQQQQQPSAISEALQLLPL 174
            V L SGLD AR+RIQ  CV+I+RA+RGGG     Y   GG QQQ P+ + EA+QLLPL
Sbjct:  617 VALTSGLDAARARIQDVCVEILRATRGGG-----YGGYGGAQQQ-PAGMPEAIQLLPL 668
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A7S2YEK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YEK7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.780e-8
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGGRVS-SPYMAPGGQQQQQPSA--ISEALQLLPL 174
            V LKSGLDNAR R+QQ CV+IIRA++GG R + S Y  PG Q    P    I + L+LLPL
Sbjct:  573 VVLKSGLDNARMRMQQVCVEIIRAAKGGDRRTVSGYSVPGQQADNNPEEKPIPDNLKLLPL 633
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A7R9WMP1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WMP1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.360e-7
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGG-RVSSPYMAP--GGQQ--QQQPSAISEALQLLPL 174
            V++K+ LDNAR R+QQ CV+II+ S+GGG R  S Y AP   GQQ  + +   I E LQLLPL
Sbjct:  101 VSIKTNLDNARQRLQQMCVEIIKFSKGGGKRTVSGYPAPPPAGQQGEEDEKKPIPENLQLLPL 163
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A7S2XPE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPE8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.650e-7
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASR-GGGRVSSPYMAP-------GGQQQQQPSAISEALQLLPL 174
            ++LKS LDNARSR+QQ CVDIIRA++ G  R  S Y  P       GG  + +P  I E LQLLPL
Sbjct:  698 LSLKSNLDNARSRLQQICVDIIRAAKKGDSRTVSGYAVPPPGGMQGGGDSENKP--IPENLQLLPL 761
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A7S4JTX9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JTX9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.230e-6
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGG---RVSSPYM-----APGGQQQQQPSAISEALQLLPL 174
            V +K+ LDNAR R+QQ CVDIIR S+GGG   R ++ Y       PGG        I E L+LLPL
Sbjct:  641 VAVKTNLDNARQRLQQMCVDIIRFSKGGGQGQRTAAAYAPPGAATPGGDGADAMKPIPENLKLLPL 706
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A448ZPS3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPS3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.030e-6
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGG-RVSSPYMAPGGQQ--QQQPSAISEALQLLPL 174
            V+LK+ LDNAR R+QQ CVD+IR+++GGG R  S Y  P   Q  + +  ++  +L+L PL
Sbjct:  675 VSLKTSLDNARMRLQQTCVDLIRSAKGGGVRTVSGYAVPQAPQSGESEDDSLPPSLELFPL 735
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A7S3LJS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJS9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.680e-6
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGG-RVSSPYMAP 114
            V+LKSGLDNAR R+QQ CV+IIRA+RGG  R  S Y  P
Sbjct:  507 VSLKSGLDNARMRLQQVCVEIIRAARGGDKRTVSGYSVP 545
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BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A1E7FHB2_9STRA (Sec23_trunk-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHB2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.700e-6
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 VTLKSGLDNARSRIQQACVDIIRASRGGGRVS-SPYMAPGGQQ--QQQPSAISEALQLLPL 174
            VTLK+ LDNAR R+QQ CVD+IRA++GG R + S Y  P   Q  + +  +I  +L+L PL
Sbjct:  670 VTLKTTLDNARMRMQQICVDLIRAAKGGDRRTISGYAVPQAPQSNEDEDDSIPTSLELFPL 730
[Close]
BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Match: A0A8J2SWF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWF0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.740e-5
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    4 TLKSGLDNARSRIQQACVDIIRASRGGGRVSSP--YMAPG-------GQQQQQPSAISEALQLLPL 174
            TLK+GLD ARSR+QQ C+D++ A R G   +S   Y AP         Q   QP  + E+LQLLPL
Sbjct:  959 TLKAGLDAARSRLQQRCIDVVAACRHGRSSASVGGYGAPAVRGAPAAPQTPSQPPKLPESLQLLPL 1024
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig738.18630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FPJ3_ECTSI3.500e-1879.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAX8_9STRA2.020e-858.62Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A7S2YEK7_9STRA3.780e-855.74Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7R9WMP1_9STRA3.360e-753.97Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S2XPE8_9STRA4.650e-753.03Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4JTX9_9STRA2.230e-648.48Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A448ZPS3_9STRA3.030e-645.90Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3LJS9_9STRA5.680e-666.67Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7FHB2_9STRA5.700e-649.18Sec23_trunk-domain-containing protein n=1 Tax=Frag... [more]
A0A8J2SWF0_9STRA3.740e-546.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig738contigF-serratus_M_contig738:20952..21233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue6.8e-15
Seed eggNOG ortholog2880.D7FPJ3
Preferred nameSEC24B
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1985@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932238.1561692-CDS-F-serratus_M_contig738:20953..209981622932238.1561692-CDS-F-serratus_M_contig738:20953..20998Fucus serratus maleCDSF-serratus_M_contig738 20954..20998 -
1690964212.8639128-CDS-F-serratus_M_contig738:20953..209981690964212.8639128-CDS-F-serratus_M_contig738:20953..20998Fucus serratus maleCDSF-serratus_M_contig738 20954..20998 -
1622932238.1719046-CDS-F-serratus_M_contig738:21104..212331622932238.1719046-CDS-F-serratus_M_contig738:21104..21233Fucus serratus maleCDSF-serratus_M_contig738 21105..21233 -
1690964212.877436-CDS-F-serratus_M_contig738:21104..212331690964212.877436-CDS-F-serratus_M_contig738:21104..21233Fucus serratus maleCDSF-serratus_M_contig738 21105..21233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig738.18630.1prot_F-serratus_M_contig738.18630.1Fucus serratus malepolypeptideF-serratus_M_contig738 20954..21233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig738.18630.1

>prot_F-serratus_M_contig738.18630.1 ID=prot_F-serratus_M_contig738.18630.1|Name=mRNA_F-serratus_M_contig738.18630.1|organism=Fucus serratus male|type=polypeptide|length=58bp
VTLKSGLDNARSRIQQACVDIIRASRGGGRVSSPYMAPGGQQQQQPSAIS
EALQLLPL
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mRNA from alignment at F-serratus_M_contig738:20952..21233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig738.18630.1 ID=mRNA_F-serratus_M_contig738.18630.1|Name=mRNA_F-serratus_M_contig738.18630.1|organism=Fucus serratus male|type=mRNA|length=282bp|location=Sequence derived from alignment at F-serratus_M_contig738:20952..21233- (Fucus serratus male)
GTCACGCTGAAGAGCGGCCTTGACAACGCGCGCAGCCGCATCCAGCAAGC
GTGCGTCGACATCATCCGGGCCAGCCGCGGCGGCGGTCGCGTCTCCAGCC
CCTACATGGCCCCCGGCGGGCAGCAGCAGGTATGTGTTGCGTATCTCTCA
CGTCGCTGTTCGATCTAAATGAAACACGTCAACCCTCCCTCCCCCCCCCC
CTTAATTGTGTATTTTCATCTTATCTCATTTTCAGCAACAGCCTTCGGCG
ATCTCGGAGGCACTCCAGCTCCTCCCGCTGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig738:20952..21233-

>mRNA_F-serratus_M_contig738.18630.1 ID=mRNA_F-serratus_M_contig738.18630.1|Name=mRNA_F-serratus_M_contig738.18630.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig738:20952..21233- (Fucus serratus male)
GTCACGCTGAAGAGCGGCCTTGACAACGCGCGCAGCCGCATCCAGCAAGC
GTGCGTCGACATCATCCGGGCCAGCCGCGGCGGCGGTCGCGTCTCCAGCC
CCTACATGGCCCCCGGCGGGCAGCAGCAGGTCACGCTGAAGAGCGGCCTT
GACAACGCGCGCAGCCGCATCCAGCAAGCGTGCGTCGACATCATCCGGGC
CAGCCGCGGCGGCGGTCGCGTCTCCAGCCCCTACATGGCCCCCGGCGGGC
AGCAGCAGCAACAGCCTTCGGCGATCTCGGAGGCACTCCAGCTCCTCCCG
CTGCAACAGCCTTCGGCGATCTCGGAGGCACTCCAGCTCCTCCCGCTG
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