mRNA_F-serratus_M_contig737.18622.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig737.18622.1
Unique NamemRNA_F-serratus_M_contig737.18622.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: D8LIY3_ECTSI (Peroxisomal membrane protein PEX14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY3_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.070e-28
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    4 KYLRKGTVRSEAVVCHGMVFVSGQTA-------SAAGEGNQPAGED--SEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
            K  +KG+VRSEAV   G+VF+SGQTA         +GEG+    E    EQQ A+AL+K++ELL++ GSS S+VVSALV VR+L +DL GV+KAW RWIDK+NPPARTV+Q
Sbjct:   72 KRFQKGSVRSEAVASGGIVFISGQTALPSPTAGDDSGEGDVGVAESLSPEQQAARALDKIKELLEEVGSSTSKVVSALVCVRDLGQDLPGVEKAWGRWIDKDNPPARTVIQ 182          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: L1JS80_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JS80_GUITC)

HSP 1 Score: 75.9 bits (185), Expect = 1.950e-15
Identity = 38/104 (36.54%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 VKYLRKGTVRSEAVVCHG-MVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
            V+ LR G  R   +VC+G +V+++GQT+          GED   QT + LEK+  LL +AGS  SR+++A++++++++ D  G++  W+ W+D EN P R  V+
Sbjct:   12 VRRLRTGDPRCSGIVCYGGIVYLTGQTSD--------EGEDIRSQTRRVLEKIDALLAEAGSDKSRLLTAMIWLKDIQRDFHGMNAVWNDWVDAENKPTRACVE 107          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A7S2UIG1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIG1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.210e-12
Identity = 35/94 (37.23%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   31 SEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
            S  V+ + +V++SGQT ++A        +D E QT   L+KV +LL +AG+S S +++A ++++N+E+D   ++  WS W+D EN P R  V+A
Sbjct:   47 SRIVIHNNIVYISGQTDTSA--------DDIEGQTLNTLKKVDDLLAEAGTSKSELITASIWLKNIEKDFHSMNAIWSGWVDPENKPVRATVEA 132          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A5B0EW55_9PSED (RidA family protein n=1 Tax=Pseudomonas sp. ANT_J12 TaxID=2597351 RepID=A0A5B0EW55_9PSED)

HSP 1 Score: 67.0 bits (162), Expect = 3.820e-12
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   31 SEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
            S AVVC+G VFV GQTAS        A +D + QTA+ L+K+   L+ AG   +R+VSA +++ +++ D + +++ W  W+ + + PAR  V++
Sbjct:   14 SRAVVCNGFVFVGGQTAS-------DATQDIKGQTAQVLQKIDGFLEKAGLDKTRIVSAQIWLADIQADFSKMNEVWDAWVPQGHTPARATVES 100          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: J2QEL9_9PSED (Putative translation initiation inhibitor, yjgF family n=3 Tax=unclassified Pseudomonas TaxID=196821 RepID=J2QEL9_9PSED)

HSP 1 Score: 67.0 bits (162), Expect = 4.100e-12
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
            ++ ++ G   S+ V+  G+V++SGQTAS    G + A  +  +QT   L K+  LL +AGS  +R++S  +Y++ +E D A ++ AW  WI+ E+ PAR  VQA
Sbjct:    4 IQRIQTGPRMSKIVIHSGVVYLSGQTAS----GGEFASGNITEQTQAVLAKIDNLLAEAGSDKTRILSTTIYLKTME-DFATMNVAWESWINPEHTPARATVQA 102          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: V2TM83_9GAMM (Uncharacterized protein n=3 Tax=Acinetobacter TaxID=469 RepID=V2TM83_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 7.640e-12
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   10 LRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
            L K +   EA +   ++ ++GQ A           +D   QT + L+ +   L+DAGS+ S+++S  +Y++++E+D   ++  W  WID ENPPART V+A
Sbjct:    6 LHKTSRFCEAAITGNLIHLAGQLAD-------DISQDITSQTQQTLDNIDRFLEDAGSNKSQILSVTIYLKDIEKDYQAMNTLWDAWIDPENPPARTCVEA 99          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A6N7D2P4_9BURK (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Xylophilus sp. TaxID=2653893 RepID=A0A6N7D2P4_9BURK)

HSP 1 Score: 66.2 bits (160), Expect = 7.640e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   28 RSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
            RS AVV + MVFV GQTA          G+D + QT + L K+++ L +AG+  SR+++A ++++NLE D AG++  W  W      P R   Q
Sbjct:   12 RSRAVVYNNMVFVGGQTAD-------DRGQDIQGQTRQTLAKIEKFLAEAGTDKSRLLTAQIWIKNLERDFAGMNAVWDAWTAPGAAPTRATAQ 98          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A432V142_9HYPH (RidA family protein n=1 Tax=Pseudaminobacter arsenicus TaxID=1851146 RepID=A0A432V142_9HYPH)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-11
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPAR 297
            +K +   + RS AVV   MV++ GQ     G+  Q    D + QT + L K+ +LL++AGSS S+VVSA +++++++ D  G+++ W  WID +NPPAR
Sbjct:    4 MKRIDANSRRSRAVVVGNMVYLGGQV----GDSKQA---DIKVQTRETLAKIDQLLEEAGSSRSKVVSATIWLKSMD-DYDGMNEIWDAWIDADNPPAR 94          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: F4GAJ4_ALIDK (Endoribonuclease L-PSP n=14 Tax=Burkholderiales TaxID=80840 RepID=F4GAJ4_ALIDK)

HSP 1 Score: 65.5 bits (158), Expect = 1.680e-11
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
            +K +     RS AVV + MVFV GQTA           +D   QTA+ L K+++ L +AG+  SR+++A +++++LE D AG+++ W  W      P R   Q
Sbjct:    3 IKRIATDNRRSRAVVYNNMVFVGGQTAD-------DRSQDIRGQTAQTLAKIEKFLAEAGTDKSRLLTAQIWIKDLERDFAGMNEVWDAWTAPNAAPTRATAQ 98          
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: F3QKS9_9BURK (Endoribonuclease L-PSP n=8 Tax=Proteobacteria TaxID=1224 RepID=F3QKS9_9BURK)

HSP 1 Score: 65.1 bits (157), Expect = 2.210e-11
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
            +K +  G   SEAVVC G+V++SGQ   A          D + QTA+ L+ + +LL  AGS    ++   VY+ N+    + +++AW  W+ K NPPAR+V+++
Sbjct:    4 IKRIEPGRRFSEAVVCDGVVYISGQVDLA-------RNRDPKVQTAEVLKTIDDLLAKAGSDKEHILRCTVYLSNMGY-FSEMNQAWEEWVSKTNPPARSVLES 99          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIY3_ECTSI1.070e-2857.66Peroxisomal membrane protein PEX14 n=1 Tax=Ectocar... [more]
L1JS80_GUITC1.950e-1536.54Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2UIG1_9STRA2.210e-1237.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A5B0EW55_9PSED3.820e-1237.23RidA family protein n=1 Tax=Pseudomonas sp. ANT_J1... [more]
J2QEL9_9PSED4.100e-1237.50Putative translation initiation inhibitor, yjgF fa... [more]
V2TM83_9GAMM7.640e-1233.66Uncharacterized protein n=3 Tax=Acinetobacter TaxI... [more]
A0A6N7D2P4_9BURK7.640e-1238.302-iminobutanoate/2-iminopropanoate deaminase n=1 T... [more]
A0A432V142_9HYPH1.490e-1139.39RidA family protein n=1 Tax=Pseudaminobacter arsen... [more]
F4GAJ4_ALIDK1.680e-1134.95Endoribonuclease L-PSP n=14 Tax=Burkholderiales Ta... [more]
F3QKS9_9BURK2.210e-1135.58Endoribonuclease L-PSP n=8 Tax=Proteobacteria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig737contigF-serratus_M_contig737:378285..378596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog55529.EKX50938
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Endoribonuclease L-PSP
EggNOG OGs2CZ16@1,2S4QA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932236.820244-CDS-F-serratus_M_contig737:378284..3785961622932236.820244-CDS-F-serratus_M_contig737:378284..378596Fucus serratus maleCDSF-serratus_M_contig737 378285..378596 +
1690964212.3155856-CDS-F-serratus_M_contig737:378284..3785961690964212.3155856-CDS-F-serratus_M_contig737:378284..378596Fucus serratus maleCDSF-serratus_M_contig737 378285..378596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig737.18622.1prot_F-serratus_M_contig737.18622.1Fucus serratus malepolypeptideF-serratus_M_contig737 378285..378596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig737.18622.1

>prot_F-serratus_M_contig737.18622.1 ID=prot_F-serratus_M_contig737.18622.1|Name=mRNA_F-serratus_M_contig737.18622.1|organism=Fucus serratus male|type=polypeptide|length=104bp
VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALE
KVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPART
VVQA
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mRNA from alignment at F-serratus_M_contig737:378285..378596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig737.18622.1 ID=mRNA_F-serratus_M_contig737.18622.1|Name=mRNA_F-serratus_M_contig737.18622.1|organism=Fucus serratus male|type=mRNA|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig737:378285..378596+ (Fucus serratus male)
GTAAAATACCTCCGGAAGGGGACCGTCAGAAGCGAGGCGGTGGTATGCCA CGGTATGGTCTTCGTGAGCGGGCAAACGGCATCAGCAGCAGGGGAAGGCA ATCAACCCGCGGGAGAGGACTCGGAGCAGCAAACAGCGAAGGCTTTGGAG AAGGTCCAAGAGTTGCTGAAAGACGCTGGCTCGAGCCCCTCGAGGGTTGT ATCTGCGTTAGTTTACGTTCGAAATCTGGAGGAAGACCTCGCGGGAGTGG ACAAGGCCTGGTCGCGATGGATCGATAAGGAGAACCCGCCAGCCCGGACA GTGGTGCAGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig737:378285..378596+

>mRNA_F-serratus_M_contig737.18622.1 ID=mRNA_F-serratus_M_contig737.18622.1|Name=mRNA_F-serratus_M_contig737.18622.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig737:378285..378596+ (Fucus serratus male)
GTAAAATACCTCCGGAAGGGGACCGTCAGAAGCGAGGCGGTGGTATGCCA
CGGTATGGTCTTCGTGAGCGGGCAAACGGCATCAGCAGCAGGGGAAGGCA
ATCAACCCGCGGGAGAGGACTCGGAGCAGCAAACAGCGAAGGCTTTGGAG
AAGGTCCAAGAGTTGCTGAAAGACGCTGGCTCGAGCCCCTCGAGGGTTGT
ATCTGCGTTAGTTTACGTTCGAAATCTGGAGGAAGACCTCGCGGGAGTGG
ACAAGGCCTGGTCGCGATGGATCGATAAGGAGAACCCGCCAGCCCGGACA
GTGGTGCAGGCGGTAAAATACCTCCGGAAGGGGACCGTCAGAAGCGAGGC
GGTGGTATGCCACGGTATGGTCTTCGTGAGCGGGCAAACGGCATCAGCAG
CAGGGGAAGGCAATCAACCCGCGGGAGAGGACTCGGAGCAGCAAACAGCG
AAGGCTTTGGAGAAGGTCCAAGAGTTGCTGAAAGACGCTGGCTCGAGCCC
CTCGAGGGTTGTATCTGCGTTAGTTTACGTTCGAAATCTGGAGGAAGACC
TCGCGGGAGTGGACAAGGCCTGGTCGCGATGGATCGATAAGGAGAACCCG
CCAGCCCGGACAGTGGTGCAGGCG
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