mRNA_F-serratus_M_contig737.18621.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig737.18621.1 vs. uniprot
Match: A0A6H5K4C0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4C0_9PHAE) HSP 1 Score: 379 bits (972), Expect = 2.060e-125 Identity = 199/318 (62.58%), Postives = 242/318 (76.10%), Query Frame = 3
Query: 51 LRRKIAGGLIALAYGRSVEAFAVGGL--RSTVRSARFPSTPMALVAGRRPAGEVHYFAGSRTSGVRRTXXXXXXXGMDFVTCSDEDFRNYIVGWTFVWSGIIPYTFIAAK---NVLGEVVTAKALPAVSKGEDSTISNQSLLLYKDPIKLIDVVNIVGRFQTYDEVQTDKTKKGLASDYLFRDTFKESLRKRKFKEWPKGPDGQLALQDAFGSDIKAMTRTIAKRPLSESAMNAVFDTFAGSPLSIVADRFKVENQLEKWRKDSTFDVKGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEPITTRYGNPLSFLGF 989
L R + G L+ALA RS +AFA GG + R + P+A + + A S + G R G DF TCS+ DFR YI+GWTFVWSGIIPYTFIA+K NVLGEV+ KA V +GED+TISNQSLLLYKDPIKL+D+VNIVGRFQT+D+VQ K G+ SDYLFR+TFKE+LR+ KFK WP GPDGQ AL+DAFG D+KA++RT+AKR LS++AM+AVFD+F GSPLS+VADRFKV+NQL+ WRKD+TFD+KGFEQGLLVGRLLFLFTIV+++ L LAGYGVFF++PI RYGNPL+FLGF
Sbjct: 3 LARSLVGVLLALAGRRSADAFASGGASRHAIGRRSALSGAPVASIVSTTRSEMNRVRAASPSRGSARMLA-----GQDFATCSEADFRAYIIGWTFVWSGIIPYTFIASKAIQNVLGEVIGFKARSTVKEGEDATISNQSLLLYKDPIKLLDIVNIVGRFQTFDDVQDKKG--GVMSDYLFRNTFKENLRRSKFKGWPAGPDGQPALKDAFGGDVKAVSRTMAKRELSDTAMDAVFDSFVGSPLSLVADRFKVDNQLDNWRKDNTFDIKGFEQGLLVGRLLFLFTIVSLVGLLLAGYGVFFVQPIIIRYGNPLAFLGF 313
BLAST of mRNA_F-serratus_M_contig737.18621.1 vs. uniprot
Match: A0A835YTS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS8_9STRA) HSP 1 Score: 173 bits (438), Expect = 7.120e-47 Identity = 95/220 (43.18%), Postives = 139/220 (63.18%), Query Frame = 3
Query: 309 NYIVGW-TFVWSGIIPYTFIAAKNVLGEVVTAKALPAVSKGEDSTISNQSLLLYKDPIKLIDVVNIVGRFQTYDEVQTDKTKKGLASDYLFRDTFKESLRKRKFKEWPKGPDGQLALQDAFGSDIKAMTRTIAKRPLSESAMNAVFDTFAGSPLSIVADRFKVENQLEKWRKDS-TFDVKGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEPITTRY 962
N +VG+ + GI+PYT +A K++ +V +ALPAV GE+ T+SNQ LLLY +PI+LIDV+NIV RF+++DE+Q + G S+YL R+ FK+ + K WP +G QD F S A T+ + + +SA++ VFD F+GS + +ADRFKVE L+ WR D+ +F+V FE+ LLV R LF ++ L+LA + VFFI P+ R+
Sbjct: 15 NTVVGFMALAFQGILPYTIMANKSIFSDVGGFRALPAVKTGEEVTVSNQPLLLYGEPIRLIDVINIVSRFESFDELQDELRDDGNRSNYLRREYFKQKVLTLAPKAWPADENGVPVGQDMFASTSVA---TLKNKEIRDSALDVVFDVFSGSSRAYIADRFKVEYNLDSWRPDARSFNVAAFEKDLLVTRYSILFIYAVLLLLQLACWSVFFINPLALRF 231
BLAST of mRNA_F-serratus_M_contig737.18621.1 vs. uniprot
Match: A0A7S2USE2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USE2_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.910e-22 Identity = 63/162 (38.89%), Postives = 86/162 (53.09%), Query Frame = 3
Query: 396 TAKALPAVSKGEDSTISNQSLLLYKDPIKLIDVVNIVGRFQTYDEVQTDKTKKGLASDYLFRDTFKESLRKRKFKEWPKGPDGQLALQDAFGS-DIKAMTRTIAKRPLSESAMNAVFDTFAGSPLSIVADRFKVENQLEKWRKDSTFDVKGFEQGLLVGRLL 878
++ AL +S E T+ N LL Y + +KL+DVVN+VGRFQ +D V + L R+ FK+ +RK KFK WPK GQ F D + + LSE A++AVFDTF + S +R K E Q +WR+ FDV+ FE LL L+
Sbjct: 64 SSHALMFMSDAESLTVKNNGLLKYGEDVKLLDVVNVVGRFQGWDGVWEQPPPGTFFASGLSRERFKDKVRKEKFKSWPKDSSGQSVAAKLFPELDGPKGVKQVDSMELSEVALDAVFDTFNSA--SSHTERRKAEEQFAQWRQGDVFDVEAFESNLLKANLI 223
BLAST of mRNA_F-serratus_M_contig737.18621.1 vs. uniprot
Match: A0A7S0KA49_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KA49_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.130e-15 Identity = 70/230 (30.43%), Postives = 107/230 (46.52%), Query Frame = 3
Query: 330 FVWSGIIPYTFIAAKNVLGEVVTAKA------LPAVSKGEDST---ISNQSLLLYKDPIKLIDVVNIVGRFQTYDEVQTDKTKKGLASDYLF----------RDTFKESLRKRKFKEWPKGPD-----GQLALQDAFGSDIKAMTRTIAKRPLSESAMNAVFDTFAGSPLSIVADRFKVENQLEKWRKDSTFDVKGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEP 947
F+ G+IP A K +LG ++ +A + VS S I N LL ++P+KL DVV IVGR + V K D L R FK+++R KF WP P G + L+ F ++ + P+ + A++AVFDT+A S +A KV+ QL+ WR ++ FD+ F + GR + I+T I +++ YG F+ P
Sbjct: 82 FLGGGLIPPAIAANKLMLGTILGQRAGGDDDSVAKVSTSASSVSPDIPNSKLLFAREPVKLADVVAIVGRIRDVQSVADWKNLPSAKRDNLIDPENPPMWLPRGMFKDNIRNAKFVGWPVDPSTGEVVGGIELKSEFEREVSKKSY-----PIPDVALDAVFDTWAWG--SGIATPDKVDVQLQAWRSNNGFDLNKFASAAVAGRSVTGAAILTFITIQVMVYGCLFVAP 304
BLAST of mRNA_F-serratus_M_contig737.18621.1 vs. uniprot
Match: A0A7S1BLB2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLB2_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.800e-8 Identity = 67/260 (25.77%), Postives = 119/260 (45.77%), Query Frame = 3
Query: 342 GIIPYTFIAAKNVLGEVVTAKALPAVSKGEDS----------------------TISNQSLLLYKDPIKLIDVVNIVGRFQTYDEV----QTDKTKKGLASD-----YLFRDTFKESLRKRKFKEWPKGPDGQ-LALQDAFGSDIKAMTRTIAKRPLSESAMNAVFDTFAGSPLSIVADRFKVENQLEKWRKDS-TFDVKGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEP-ITTRYGNPLSF--LGF*SS*CDGS 1013
G+IP A ++ + A P +G+ S T+S LL +P+KL+DV+ ++GR ++V TK S +L R+T+K ++R K++ WP DG + + S+ K + + A+ +S++A++ VFDT+A + VA KV L + K + TFD+ F+ ++GR + I+ + +++ +G FI P + +G + F LG CDG+
Sbjct: 103 GLIPALISANTRIIESLTRKGAAPPKEEGDPSKSLDPYAALPISYVSDSGASGPTLSCSPLLFSGEPVKLVDVLAVIGRISDVNDVARWSDLPSTKLPNVSSNNPPQWLPRNTYKVNIRAAKWRGWPVNADGSPIGGGELQRSEEKRLRQKGAE--ISDAALDVVFDTWALG--AGVATPDKVSEALSSYLKSNGTFDLGKFQSAAVLGRAVTAAAILFFLVIQVIAFGTLFIAPFLRVFFGIDIGFGVLGA----CDGA 354 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig737.18621.1 >prot_F-serratus_M_contig737.18621.1 ID=prot_F-serratus_M_contig737.18621.1|Name=mRNA_F-serratus_M_contig737.18621.1|organism=Fucus serratus male|type=polypeptide|length=317bp MVGLRRKIAGGLIALAYGRSVEAFAVGGLRSTVRSARFPSTPMALVAGRRback to top mRNA from alignment at F-serratus_M_contig737:360513..375405- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig737.18621.1 ID=mRNA_F-serratus_M_contig737.18621.1|Name=mRNA_F-serratus_M_contig737.18621.1|organism=Fucus serratus male|type=mRNA|length=14893bp|location=Sequence derived from alignment at F-serratus_M_contig737:360513..375405- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig737:360513..375405- >mRNA_F-serratus_M_contig737.18621.1 ID=mRNA_F-serratus_M_contig737.18621.1|Name=mRNA_F-serratus_M_contig737.18621.1|organism=Fucus serratus male|type=CDS|length=1902bp|location=Sequence derived from alignment at F-serratus_M_contig737:360513..375405- (Fucus serratus male)back to top |