mRNA_F-serratus_M_contig737.18620.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig737.18620.1
Unique NamemRNA_F-serratus_M_contig737.18620.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig737contigF-serratus_M_contig737:348525..349020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size496
Cds size486
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932234.0913963-CDS-F-serratus_M_contig737:348524..3490101622932234.0913963-CDS-F-serratus_M_contig737:348524..349010Fucus serratus maleCDSF-serratus_M_contig737 348525..349010 +
1690964211.0833428-CDS-F-serratus_M_contig737:348524..3490101690964211.0833428-CDS-F-serratus_M_contig737:348524..349010Fucus serratus maleCDSF-serratus_M_contig737 348525..349010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932234.1110585-UTR-F-serratus_M_contig737:349010..3490201622932234.1110585-UTR-F-serratus_M_contig737:349010..349020Fucus serratus maleUTRF-serratus_M_contig737 349011..349020 +
1690964211.0939398-UTR-F-serratus_M_contig737:349010..3490201690964211.0939398-UTR-F-serratus_M_contig737:349010..349020Fucus serratus maleUTRF-serratus_M_contig737 349011..349020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig737.18620.1prot_F-serratus_M_contig737.18620.1Fucus serratus malepolypeptideF-serratus_M_contig737 348525..349010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig737.18620.1

>prot_F-serratus_M_contig737.18620.1 ID=prot_F-serratus_M_contig737.18620.1|Name=mRNA_F-serratus_M_contig737.18620.1|organism=Fucus serratus male|type=polypeptide|length=162bp
MQATGRGLSNINCHYCHKFGYYKKGCADLKAVHLQNQRRRRRQHKHRGGH
HPHQPKPGGRSSRGQGGKCGAHATRPSPTTTPIAAPGRRTGSTATPTSPQ
VRPPREVQPATKPAKSQVEGENGAGRSAQFRQQRRRGGEIAPGQLILVLS
PSLRPSTPKPE*
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mRNA from alignment at F-serratus_M_contig737:348525..349020+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig737.18620.1 ID=mRNA_F-serratus_M_contig737.18620.1|Name=mRNA_F-serratus_M_contig737.18620.1|organism=Fucus serratus male|type=mRNA|length=496bp|location=Sequence derived from alignment at F-serratus_M_contig737:348525..349020+ (Fucus serratus male)
ATGCAGGCGACGGGGCGGGGCCTCAGCAACATAAATTGCCACTACTGCCA
CAAGTTCGGCTACTATAAGAAAGGCTGCGCCGACTTGAAGGCAGTCCATC
TTCAGAATCAGCGACGCAGACGACGGCAGCACAAACACCGAGGCGGACAT
CACCCGCATCAGCCGAAGCCAGGGGGCAGAAGCAGCAGAGGGCAGGGGGG
TAAATGTGGTGCTCATGCCACAAGACCATCACCCACAACGACGCCGATTG
CCGCGCCAGGTCGGCGAACGGGCTCAACGGCAACGCCCACTTCGCCCCAA
GTCCGTCCTCCGAGAGAGGTCCAGCCTGCGACCAAGCCCGCGAAATCCCA
AGTAGAGGGGGAGAACGGGGCCGGCCGTTCGGCCCAGTTTCGACAGCAGC
GACGCAGGGGTGGAGAAATCGCCCCTGGCCAGTTAATCCTCGTGCTGAGC
CCCAGCCTGCGACCAAGCACGCCAAAGCCCGAGTAGAGGAGGAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig737:348525..349020+

>mRNA_F-serratus_M_contig737.18620.1 ID=mRNA_F-serratus_M_contig737.18620.1|Name=mRNA_F-serratus_M_contig737.18620.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig737:348525..349020+ (Fucus serratus male)
ATGCAGGCGACGGGGCGGGGCCTCAGCAACATAAATTGCCACTACTGCCA
CAAGTTCGGCTACTATAAGAAAGGCTGCGCCGACTTGAAGGCAGTCCATC
TTCAGAATCAGCGACGCAGACGACGGCAGCACAAACACCGAGGCGGACAT
CACCCGCATCAGCCGAAGCCAGGGGGCAGAAGCAGCAGAGGGCAGGGGGG
TAAATGTGGTGCTCATGCCACAAGACCATCACCCACAACGACGCCGATTG
CCGCGCCAGGTCGGCGAACGGGCTCAACGGCAACGCCCACTTCGCCCCAA
GTCCGTCCTCCGAGAGAGGTCCAGCCTGCGACCAAGCCCGCGAAATCCCA
AGTAGAGGGGGAGAACGGGGCCGGCCGTTCGGCCCAGTTTCGACAGCAGC
GACGCAGGGGTGGAGAAATCGCCCCTGGCCAGTTAATCCTCGTGCTGAGC
CCCAGCCTGCGACCAAGCACGCCAAAGCCCGAGTAGATGCAGGCGACGGG
GCGGGGCCTCAGCAACATAAATTGCCACTACTGCCACAAGTTCGGCTACT
ATAAGAAAGGCTGCGCCGACTTGAAGGCAGTCCATCTTCAGAATCAGCGA
CGCAGACGACGGCAGCACAAACACCGAGGCGGACATCACCCGCATCAGCC
GAAGCCAGGGGGCAGAAGCAGCAGAGGGCAGGGGGGTAAATGTGGTGCTC
ATGCCACAAGACCATCACCCACAACGACGCCGATTGCCGCGCCAGGTCGG
CGAACGGGCTCAACGGCAACGCCCACTTCGCCCCAAGTCCGTCCTCCGAG
AGAGGTCCAGCCTGCGACCAAGCCCGCGAAATCCCAAGTAGAGGGGGAGA
ACGGGGCCGGCCGTTCGGCCCAGTTTCGACAGCAGCGACGCAGGGGTGGA
GAAATCGCCCCTGGCCAGTTAATCCTCGTGCTGAGCCCCAGCCTGCGACC
AAGCACGCCAAAGCCCGAGTAG
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