mRNA_F-serratus_M_contig737.18619.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig737.18619.1
Unique NamemRNA_F-serratus_M_contig737.18619.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig737contigF-serratus_M_contig737:340919..345965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons10
Model size1798
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig737.18619.1prot_F-serratus_M_contig737.18619.1Fucus serratus malepolypeptideF-serratus_M_contig737 341071..345173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932233.691189-UTR-F-serratus_M_contig737:340918..3410701622932233.691189-UTR-F-serratus_M_contig737:340918..341070Fucus serratus maleUTRF-serratus_M_contig737 340919..341070 +
1690964210.890097-UTR-F-serratus_M_contig737:340918..3410701690964210.890097-UTR-F-serratus_M_contig737:340918..341070Fucus serratus maleUTRF-serratus_M_contig737 340919..341070 +
1622932233.911461-UTR-F-serratus_M_contig737:345173..3456671622932233.911461-UTR-F-serratus_M_contig737:345173..345667Fucus serratus maleUTRF-serratus_M_contig737 345174..345667 +
1690964211.0133758-UTR-F-serratus_M_contig737:345173..3456671690964211.0133758-UTR-F-serratus_M_contig737:345173..345667Fucus serratus maleUTRF-serratus_M_contig737 345174..345667 +
1622932233.9332194-UTR-F-serratus_M_contig737:345881..3459651622932233.9332194-UTR-F-serratus_M_contig737:345881..345965Fucus serratus maleUTRF-serratus_M_contig737 345882..345965 +
1690964211.0308506-UTR-F-serratus_M_contig737:345881..3459651690964211.0308506-UTR-F-serratus_M_contig737:345881..345965Fucus serratus maleUTRF-serratus_M_contig737 345882..345965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932233.7119148-CDS-F-serratus_M_contig737:341070..3410851622932233.7119148-CDS-F-serratus_M_contig737:341070..341085Fucus serratus maleCDSF-serratus_M_contig737 341071..341085 +
1690964210.9034429-CDS-F-serratus_M_contig737:341070..3410851690964210.9034429-CDS-F-serratus_M_contig737:341070..341085Fucus serratus maleCDSF-serratus_M_contig737 341071..341085 +
1622932233.7265894-CDS-F-serratus_M_contig737:341703..3417451622932233.7265894-CDS-F-serratus_M_contig737:341703..341745Fucus serratus maleCDSF-serratus_M_contig737 341704..341745 +
1690964210.9146907-CDS-F-serratus_M_contig737:341703..3417451690964210.9146907-CDS-F-serratus_M_contig737:341703..341745Fucus serratus maleCDSF-serratus_M_contig737 341704..341745 +
1622932233.745909-CDS-F-serratus_M_contig737:341908..3420421622932233.745909-CDS-F-serratus_M_contig737:341908..342042Fucus serratus maleCDSF-serratus_M_contig737 341909..342042 +
1690964210.9255352-CDS-F-serratus_M_contig737:341908..3420421690964210.9255352-CDS-F-serratus_M_contig737:341908..342042Fucus serratus maleCDSF-serratus_M_contig737 341909..342042 +
1622932233.770008-CDS-F-serratus_M_contig737:342181..3424181622932233.770008-CDS-F-serratus_M_contig737:342181..342418Fucus serratus maleCDSF-serratus_M_contig737 342182..342418 +
1690964210.934826-CDS-F-serratus_M_contig737:342181..3424181690964210.934826-CDS-F-serratus_M_contig737:342181..342418Fucus serratus maleCDSF-serratus_M_contig737 342182..342418 +
1622932233.7894394-CDS-F-serratus_M_contig737:342894..3430201622932233.7894394-CDS-F-serratus_M_contig737:342894..343020Fucus serratus maleCDSF-serratus_M_contig737 342895..343020 +
1690964210.9444067-CDS-F-serratus_M_contig737:342894..3430201690964210.9444067-CDS-F-serratus_M_contig737:342894..343020Fucus serratus maleCDSF-serratus_M_contig737 342895..343020 +
1622932233.825895-CDS-F-serratus_M_contig737:343271..3433641622932233.825895-CDS-F-serratus_M_contig737:343271..343364Fucus serratus maleCDSF-serratus_M_contig737 343272..343364 +
1690964210.9544654-CDS-F-serratus_M_contig737:343271..3433641690964210.9544654-CDS-F-serratus_M_contig737:343271..343364Fucus serratus maleCDSF-serratus_M_contig737 343272..343364 +
1622932233.8526845-CDS-F-serratus_M_contig737:343492..3436521622932233.8526845-CDS-F-serratus_M_contig737:343492..343652Fucus serratus maleCDSF-serratus_M_contig737 343493..343652 +
1690964210.9690034-CDS-F-serratus_M_contig737:343492..3436521690964210.9690034-CDS-F-serratus_M_contig737:343492..343652Fucus serratus maleCDSF-serratus_M_contig737 343493..343652 +
1622932233.8697286-CDS-F-serratus_M_contig737:344676..3448921622932233.8697286-CDS-F-serratus_M_contig737:344676..344892Fucus serratus maleCDSF-serratus_M_contig737 344677..344892 +
1690964210.9839373-CDS-F-serratus_M_contig737:344676..3448921690964210.9839373-CDS-F-serratus_M_contig737:344676..344892Fucus serratus maleCDSF-serratus_M_contig737 344677..344892 +
1622932233.8897057-CDS-F-serratus_M_contig737:345128..3451731622932233.8897057-CDS-F-serratus_M_contig737:345128..345173Fucus serratus maleCDSF-serratus_M_contig737 345129..345173 +
1690964210.997774-CDS-F-serratus_M_contig737:345128..3451731690964210.997774-CDS-F-serratus_M_contig737:345128..345173Fucus serratus maleCDSF-serratus_M_contig737 345129..345173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig737.18619.1

>prot_F-serratus_M_contig737.18619.1 ID=prot_F-serratus_M_contig737.18619.1|Name=mRNA_F-serratus_M_contig737.18619.1|organism=Fucus serratus male|type=polypeptide|length=356bp
MIRDQVKRLAEARVTAIAKIVRGYQMRVRYRGACLERHQKASRIQLYVRR
KAARLELERRFCRRDNAIKIQCLSRSRMARREACLRRRRHGAATRVQSFG
RVVLAKRERWLILRKMEAIITLQCWARSMVAKAKVGERLIEHRDVLAKRE
RWLMLRKKEAIITLQCWARGMAAKAKVAKLLIEHRSAILIECLMGKKAAR
EEASCLGEEERMAATRIQSLARARATRKKMVVEQYERDQLIAAEKTQSVA
HVKAASFEDETRRARTDAAVKREAINEHREIAAITIGSIARGYCGRRRAD
KLRKKRDAAITIQRVVRGSVCRSQIRAASEDRENTEDVAMADYPRIRFLY
LLEDL*
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mRNA from alignment at F-serratus_M_contig737:340919..345965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig737.18619.1 ID=mRNA_F-serratus_M_contig737.18619.1|Name=mRNA_F-serratus_M_contig737.18619.1|organism=Fucus serratus male|type=mRNA|length=5047bp|location=Sequence derived from alignment at F-serratus_M_contig737:340919..345965+ (Fucus serratus male)
CTTCCGACGAGAGAGCGAAGGACATTCCCCTAGACGTGCAGACCCTAGAC GTGCAGATCGGAGCACATTCACGTTCGTCGAAGCCATCTATAAATAGACC CTCCCGAGGGTTTTCGGTCAGCTTCAACGAGGCGAAGAATAAGCGGCATC GGATGATCCGAGATCAGGTACAGTATGTTGTCTTGGTTTTAACACTCGCA GATTGAGTATTTTCTGTTCCAAAGAGCTCGTGTGTCTGTCGAATTTCCGA GCGATAGGTCCACCAAAACAGTCACCCCGTTTCCCGCCATTTCCCGATTT CAAGCAACGTGTTCAAAACTGTACCTGGTGTGTATGTATGTATTTGTGTG CGTGTGGTCATCACATATAACAGAGTATAGATCAACTGGATGAGGTTGCC AATCCTGCTCGTGGTCAGCTGAACAGGGCAAAAATGAATATTTCCCTGTC CCCGTTCCCGCCTGAGAATTTGGTCTCGTGAGACGGGTTCGGCCGTCCCC TCCCGCGTCAGCCTGCTCATTCTTCACACTAACAATGAATATGGTATGTC GTCCGGTTATTTAGCGCTTCCGTGGTAGAGTCGGCCAAAGGAATCGTACA ATATTCTGTTGTTGTCTCACGGTGGGTTCACTTGCATTGTTTCAAATTTC AAGGAGAGGATGGAAAAATAAGTGGTGTTTGGTACTTTTTACCTATTTTT ATTTCTGTGCTCATACTCGTTAATATTGTTCACACCGCGCAGTACAATAT TTTTCATGTCATTTTGCTACGGTGTCGCAAACCAGGTCAAACGTCTGGCG GAAGCGAGAGTTACAGCGATTGCAAAGGTTAGCGCATTGGACATGGCATG TCGCACACTGGAACGGTCAAGGTTATTCAACTTCGTTTCGACTTTCCACA TGAACAACGTGAAAGCTTGTCCGCCTGACCCATTTCGACGCCTTCGCGAA ATCAGCAAACAGAAAGCGCCGTCGCTTATATGCTCCGCAGATTGTTAGAG GATACCAAATGAGGGTGCGATATCGAGGAGCGTGTCTGGAACGTCACCAG AAGGCCTCCAGGATTCAGCTTTATGTCCGACGCAAAGCCGCTCGACTCGA ACTTGAGCGACGCTTTTGTCGCAGGTAAGTTTGTCGCGTTAAGGTGACTC TCGGGAGACAATAACAACTGTGACTCTTCACGTGATAACCAGAGGTCGAC AAGACGTTTACAAGATCTCCACTTTTTTAAGCCAACATATCTACTAACGG CTCGTCAAACCAGGGATAATGCAATCAAGATACAGTGTCTGTCTCGCTCT CGGATGGCTCGACGCGAAGCCTGTCTACGCCGTCGTCGTCACGGCGCAGC AACGCGGGTTCAATCCTTTGGCAGGGTCGTACTCGCTAAAAGGGAACGAT GGTTAATATTGCGCAAAATGGAGGCTATAATTACACTCCAATGCTGGGCG AGGAGCATGGTAGCAAAAGCTAAAGTTGGCGAGCGTTTGATTGAACACAG GTGACATTTTAAGCTCGTTGCTCTGAAGTCGAGTAGAAAACTTCGGCATG CACTCAAAGCAAGTACCGACGGCTTTCCTCTCCGATCTCATAATTCCGTG TGGAGCGTAAGTGATACAAGAGAGATCAGGTCCTAACCCTCAAACGCGTT TTCTCGGGGGTTCAACGATTGGGGAGGGCGGGGATATGACGATTCCGTCC CCGGGGAGGTCACCAAAACAGTGTTTTCCGGGGATAGGACTACATGATCC CCTACATGGTCGGGAAGCTTGCACCTAATTCATCGCATTTGACAAGGGTG TTGGTCAAATATGCCCCCGGTAGGGGCGAGTTTTGTGTCGTTCCCTCAAA AACGGGGACAAATTTGTGGCATCCCCGCCCCCCCCCAATCGTTGAACGGG TTCGCGCCGAAGAACACGAAGCCTGTTTACGCCATCATCGTCACAGCGCA GCAACGCGGGTTCATTTCTTTGGCAGAGACGTACTCGCTAAAAGGGAACG ATGGTTAATGTTGCGCAAAAAGGAGGCTATAATTACACTCCAGTGCTGGG CGAGGGGCATGGCAGCAAAAGCTAAAGTTGCCAAGCTTTTGATTGAACAC AGGTGATATTTTAAGCTCGTTGCTCTGAAGTCGAGTAGAAAACTTCGGCA TGCACCCAAAGCAAGCACCGACGGCTTTCCTCTCCGATCTCATAATTCCG TGTGGAGCGTAAGTGAAACAAGAGGGTTCTAACCCCCAAACGCCTTTCTC GGGGGGGATCGCCGAAGAATACTTACCGCATGCGGTGCGTTCCGTAGGAT TAGAGCTAAACTCTCAGGTTGTTGCCTTTCGACGCGTTGGTTTACTGCGT TAGGTCTGCCATATTGATCGAATGCTTGATGGGAAAGAAAGCGGCAAGAG AAGAAGCTTCATGCCTCGGGGAAGAAGAGAGGATGGCAGCAACGAGGTGA TGATAACTCGGGACACATGAAATGCTATAATAATACATGTAACACCTGGT GTCACCGCTTGACGTCTTGCCCGCTAGCCCAACAATAGATCACAAGAAGT AAATGTACTGTCCTCTCGCCGCAGGATCCAGTCCCTAGCGCGGGCAAGAG CAACTAGGAAGAAAATGGTGGTAGAGCAATACGAGCGTGATCAACTAATA GCTGCCGAAAAGACCCAAAGTGTTGCTCACGTCAAAGCTGCCAGCTTCGA AGACGAAACACGTCGGGCCAGGACAGATGCGGCGGTGAGAACTCATCCTC CGATCTCATTCTCCCGCTGTGTCACGATCAACTGCAAAATGGGCTTCCGA ATCCACCATAATCACAAGCAAAAATACAACGACATCGAAATCCAGTATTT GATTCTGCACAAAACGGCACAGCCCCTCTCAAGTGTTCGTTTGGGACATC GAAGAGTACCATTTTCCAGGCTTCGTCAGGCCGGAAAAATTGATGAGGAT GAACACGTCCTTATATTACGTCAGAGGGGGGATTTTCTCTAGGATATTTT TCACATCTTCGTACGTACGTCTTAGCGTTATACCTACCGCCCGGGCAGTG CCAAATCCAGTTGGCGATGTGTCAGCACGCTGCCCAAAGAAGGATTGCAC AGCGACGTGAGGCGTCACGCCTGATCCACAGGACAAAAGAGAAAGATCGA GCTGCAATCAAAAAAAGTAGGTTGTCGCCAAGGGGAGACAAACCAGAGTA AATGGGGAAGAGCAGGCACTGCAAACTGGACTCTTTCACCGACAATATGT TTAAGCTTCACTACCTAGGCCTCAAATTTATTGCTTCATTACATTTCAAT ATAAATGACATCGAGACGAAAATGAGCAATGCTTTGTTGATAACACCTTG CTTTGTGTAATGATAACCCTCGCCAGAGGGAAGGTCTAGAAGTCTCGAAG AAGATTATGTAGAACTTTTAGTGTTAATAGCATCGCATTGGGGGAAACAC AATCAGTGTCAATCGATACCTGGAAAAGACTTTCCAAATACACTCTGAAG ACTGACCAGGTAGGGCATGAACATACGTGATGATATGACCCTACATTACA GGTTAAGCGGAATAACTAACCCATAGAGAATCATAGTCGTTCCATGATTA TTCCCCACTGATCAAGATAAGCTATCACAACGAACATGCTTCGCTCGACC GGAGTGGGAAAAAAGGTCCTTCAGCCTAATCCCGTCGACAAATTATACCG GTCAAGCAAAGAACATTGGCATCGTTTTAATTTCGTCGCTGATCCCAACC CATCCAAGGTAAAGAGAGAGGCAATCAACGAGCATCGAGAGATTGCCGCA ATCACAATTGGATCGATAGCACGAGGCTACTGTGGTAGACGACGAGCTGA CAAGCTCCGTAAGAAGAGGGATGCCGCTATTACGATTCAAAGAGTGGTTA GGGGAAGCGTGTGCAGGAGCCAAATTCGAGCGGCTTCGGAGGACAGGGAA AACACGGAAGATGTCGCTATGGCGGTAAGTATCATCAAGATCGGGAGCCC TAGAACTGTTCTGTATGAATCGAATTTTTGGCGAGCTAGAGCGTTGAGAT GCCATACCTAAATGGCATGGTCGCCCATGGCTATTTCGTACATCTTCTGC AGGTGTTGCGTAATGTTTTTCTGATATCTGATCGGTGACCCCATGACTCT AACTTCTCATTTGACCTGCAAGCTTCGCGCTCACGACGCTTGGCTTCCTT TGTGCGGCAGGACTATCCCCGGATCAGGTTTCTTTACCTACTGGAAGATT TGTAAACAAATTTTCAGGGCCTTGGCTCGGTTTGTGTCTCTACATCGTGA CGGCGTACTCTGAAAACTTATGTTTATCTGTCTGTTCAGGACGTGTATGG CATAGTACCCCGGTACGCTAAGAGTAAAGACCCTTGCCAACTGTCGATCC ATATGACTGGGAATATGCGATTGCAAGACAGATGCAACCGATTAGTGAGC TGCGAGAACACCAAGAATGCCCGAGGATCAACTCGATCATCCCCAACAAC ACAGGAAAAGCTTCAGAGACCGTCGACCACAAGGCAAAGTGAGATTATTT CCTGTGCCTACTTGAGCCTGCAACAACCAAAGAAGCTGAGAGAGCTTCTA GGGGGGGAACCAGTAATGCGGCCCGGTCTAGTAATCTGGCGTGAACGGAA CAAGAGCGGGAGCGTCGAAATTTGCGAACTTGAAAGCAAGTCAAATGCGA AAGAGGGCGTAAACGAAATTTTGTGCTCTCATCCAAGCAAAAAATGCATG TGGGTTAAAGCACAAAATGCTATGAATTCGTCATACACGATCTTTGGGTA TTTTCTCAAGGGGTTGACCAGTAAGTTCTAGCAAGCTTTTTCATCCAGTC GATTGTCGAGACACGCGGAACGATAGCCAAACCAGGGGCAGTAAGTTCTA TTTATGCAATGAGTGATGGAAAAATAAAACCCAAGGCGCAACAATCGTGG TTTCGTCGCGCAGTGGTGGGGGGCAAAGGACTCGTTGTATCGTCGGATGA AGAGCGGAATCCGTTCAGATTTGATTCAGCGCTTGGATCCTCTTCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig737:340919..345965+

>mRNA_F-serratus_M_contig737.18619.1 ID=mRNA_F-serratus_M_contig737.18619.1|Name=mRNA_F-serratus_M_contig737.18619.1|organism=Fucus serratus male|type=CDS|length=2136bp|location=Sequence derived from alignment at F-serratus_M_contig737:340919..345965+ (Fucus serratus male)
ATGATCCGAGATCAGATGATCCGAGATCAGGTCAAACGTCTGGCGGAAGC
GAGAGTTACAGCGATTGCAAAGGTCAAACGTCTGGCGGAAGCGAGAGTTA
CAGCGATTGCAAAGATTGTTAGAGGATACCAAATGAGGGTGCGATATCGA
GGAGCGTGTCTGGAACGTCACCAGAAGGCCTCCAGGATTCAGCTTTATGT
CCGACGCAAAGCCGCTCGACTCGAACTTGAGCGACGCTTTTGTCGCAGAT
TGTTAGAGGATACCAAATGAGGGTGCGATATCGAGGAGCGTGTCTGGAAC
GTCACCAGAAGGCCTCCAGGATTCAGCTTTATGTCCGACGCAAAGCCGCT
CGACTCGAACTTGAGCGACGCTTTTGTCGCAGGGATAATGCAATCAAGAT
ACAGTGTCTGTCTCGCTCTCGGATGGCTCGACGCGAAGCCTGTCTACGCC
GTCGTCGTCACGGCGCAGCAACGCGGGTTCAATCCTTTGGCAGGGTCGTA
CTCGCTAAAAGGGAACGATGGTTAATATTGCGCAAAATGGAGGCTATAAT
TACACTCCAATGCTGGGCGAGGAGCATGGTAGCAAAAGCTAAAGTTGGCG
AGCGTTTGATTGAACACAGGGATAATGCAATCAAGATACAGTGTCTGTCT
CGCTCTCGGATGGCTCGACGCGAAGCCTGTCTACGCCGTCGTCGTCACGG
CGCAGCAACGCGGGTTCAATCCTTTGGCAGGGTCGTACTCGCTAAAAGGG
AACGATGGTTAATATTGCGCAAAATGGAGGCTATAATTACACTCCAATGC
TGGGCGAGGAGCATGGTAGCAAAAGCTAAAGTTGGCGAGCGTTTGATTGA
ACACAGAGACGTACTCGCTAAAAGGGAACGATGGTTAATGTTGCGCAAAA
AGGAGGCTATAATTACACTCCAGTGCTGGGCGAGGGGCATGGCAGCAAAA
GCTAAAGTTGCCAAGCTTTTGATTGAACACAGAGACGTACTCGCTAAAAG
GGAACGATGGTTAATGTTGCGCAAAAAGGAGGCTATAATTACACTCCAGT
GCTGGGCGAGGGGCATGGCAGCAAAAGCTAAAGTTGCCAAGCTTTTGATT
GAACACAGGTCTGCCATATTGATCGAATGCTTGATGGGAAAGAAAGCGGC
AAGAGAAGAAGCTTCATGCCTCGGGGAAGAAGAGAGGATGGCAGCAACGA
GGTCTGCCATATTGATCGAATGCTTGATGGGAAAGAAAGCGGCAAGAGAA
GAAGCTTCATGCCTCGGGGAAGAAGAGAGGATGGCAGCAACGAGGATCCA
GTCCCTAGCGCGGGCAAGAGCAACTAGGAAGAAAATGGTGGTAGAGCAAT
ACGAGCGTGATCAACTAATAGCTGCCGAAAAGACCCAAAGTGTTGCTCAC
GTCAAAGCTGCCAGCTTCGAAGACGAAACACGTCGGGCCAGGACAGATGC
GGCGGATCCAGTCCCTAGCGCGGGCAAGAGCAACTAGGAAGAAAATGGTG
GTAGAGCAATACGAGCGTGATCAACTAATAGCTGCCGAAAAGACCCAAAG
TGTTGCTCACGTCAAAGCTGCCAGCTTCGAAGACGAAACACGTCGGGCCA
GGACAGATGCGGCGGTAAAGAGAGAGGCAATCAACGAGCATCGAGAGATT
GCCGCAATCACAATTGGATCGATAGCACGAGGCTACTGTGGTAGACGACG
AGCTGACAAGCTCCGTAAGAAGAGGGATGCCGCTATTACGATTCAAAGAG
TGGTTAGGGGAAGCGTGTGCAGGAGCCAAATTCGAGCGGCTTCGGAGGAC
AGGGAAAACACGGAAGATGTCGCTATGGCGGTAAAGAGAGAGGCAATCAA
CGAGCATCGAGAGATTGCCGCAATCACAATTGGATCGATAGCACGAGGCT
ACTGTGGTAGACGACGAGCTGACAAGCTCCGTAAGAAGAGGGATGCCGCT
ATTACGATTCAAAGAGTGGTTAGGGGAAGCGTGTGCAGGAGCCAAATTCG
AGCGGCTTCGGAGGACAGGGAAAACACGGAAGATGTCGCTATGGCGGACT
ATCCCCGGATCAGGTTTCTTTACCTACTGGAAGATTTGTAAGACTATCCC
CGGATCAGGTTTCTTTACCTACTGGAAGATTTGTAA
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