mRNA_F-serratus_M_contig737.18610.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig737.18610.1
Unique NamemRNA_F-serratus_M_contig737.18610.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig737contigF-serratus_M_contig737:151867..152625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig737.18610.1prot_F-serratus_M_contig737.18610.1Fucus serratus malepolypeptideF-serratus_M_contig737 151867..152569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932233.26542-CDS-F-serratus_M_contig737:151866..1519621622932233.26542-CDS-F-serratus_M_contig737:151866..151962Fucus serratus maleCDSF-serratus_M_contig737 151867..151962 -
1690964210.6376758-CDS-F-serratus_M_contig737:151866..1519621690964210.6376758-CDS-F-serratus_M_contig737:151866..151962Fucus serratus maleCDSF-serratus_M_contig737 151867..151962 -
1622932233.285663-CDS-F-serratus_M_contig737:152392..1525691622932233.285663-CDS-F-serratus_M_contig737:152392..152569Fucus serratus maleCDSF-serratus_M_contig737 152393..152569 -
1690964210.6519263-CDS-F-serratus_M_contig737:152392..1525691690964210.6519263-CDS-F-serratus_M_contig737:152392..152569Fucus serratus maleCDSF-serratus_M_contig737 152393..152569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932233.3082056-UTR-F-serratus_M_contig737:152569..1526251622932233.3082056-UTR-F-serratus_M_contig737:152569..152625Fucus serratus maleUTRF-serratus_M_contig737 152570..152625 -
1690964210.666513-UTR-F-serratus_M_contig737:152569..1526251690964210.666513-UTR-F-serratus_M_contig737:152569..152625Fucus serratus maleUTRF-serratus_M_contig737 152570..152625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig737.18610.1

>prot_F-serratus_M_contig737.18610.1 ID=prot_F-serratus_M_contig737.18610.1|Name=mRNA_F-serratus_M_contig737.18610.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MAHTPTGATQRGKINREGLGYCQPRAIRCPPRIASTSHIFTPKGATDLPS
AQSTPLRIKVSERDGSRTGEVVMYWTLVEQAYEDMSQVNI*
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mRNA from alignment at F-serratus_M_contig737:151867..152625-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig737.18610.1 ID=mRNA_F-serratus_M_contig737.18610.1|Name=mRNA_F-serratus_M_contig737.18610.1|organism=Fucus serratus male|type=mRNA|length=759bp|location=Sequence derived from alignment at F-serratus_M_contig737:151867..152625- (Fucus serratus male)
ATCAAAAAGGATACAGTAGGTAGGATGCGCAGGGAACCTATACATATAAC
GGGTGCATGGCGCATACACCCACGGGCGCAACACAAAGAGGGAAAATCAA
TAGGGAGGGTTTGGGATACTGCCAGCCGCGAGCCATCCGATGCCCCCCAC
GAATCGCAAGTACATCGCATATATTTACCCCCAAGGGCGCAACAGATCTA
CCATCGGCGCAGTCGACGCCGCTTCGTATCAAGGTGGATATAATCCAAAT
CTCAAAGCACAGCGTAAGAAGTACGTGGTGATCCAGGCATAGACCCCCAT
AGCCAGTACCAAACAGGTCCGGTGTGCTAAAAACCTGCATTGGGAGTCCG
TACTGGTTATATTTGTACTTGGTGTATTTTTTGTACCGAACGGAGGACTT
ACTTTCCAACACTGAAGCTGCGCTGTGCTTTCGCAGTAATCACTGCAGGG
ACCACGAGACACCCACCACTACGCAAACATGCGATCTGCGTGTAGCACTT
TTATTACTTGGCTGCGGCTTCCATTCTTGAGTGAGCCGGTGTTGAAACCA
GTCGAAAAACTTGTTGAGTTATGCACGATTGTCTTAACCTATTCGCTTCT
TCAGAGCCCGAATAATGAGTAAGATTTTTTACGTCAAATTCCCCACTGCT
GATGCAATGGTAGGTCTCTGAGCGGGATGGGTCTCGCACAGGAGAGGTGG
TGATGTACTGGACGTTGGTTGAGCAGGCTTATGAAGACATGTCACAGGTG
AACATATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig737:151867..152625-

>mRNA_F-serratus_M_contig737.18610.1 ID=mRNA_F-serratus_M_contig737.18610.1|Name=mRNA_F-serratus_M_contig737.18610.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig737:151867..152625- (Fucus serratus male)
ATGGCGCATACACCCACGGGCGCAACACAAAGAGGGAAAATCAATAGGGA
GGGTTTGGGATACTGCCAGCCGCGAGCCATCCGATGCCCCCCACGAATCG
CAAGTACATCGCATATATTTACCCCCAAGGGCGCAACAGATCTACCATCG
GCGCAGTCGACGCCGCTTCGTATCAAGATGGCGCATACACCCACGGGCGC
AACACAAAGAGGGAAAATCAATAGGGAGGGTTTGGGATACTGCCAGCCGC
GAGCCATCCGATGCCCCCCACGAATCGCAAGTACATCGCATATATTTACC
CCCAAGGGCGCAACAGATCTACCATCGGCGCAGTCGACGCCGCTTCGTAT
CAAGGTCTCTGAGCGGGATGGGTCTCGCACAGGAGAGGTGGTGATGTACT
GGACGTTGGTTGAGCAGGCTTATGAAGACATGTCACAGGTGAACATATAA
GTCTCTGAGCGGGATGGGTCTCGCACAGGAGAGGTGGTGATGTACTGGAC
GTTGGTTGAGCAGGCTTATGAAGACATGTCACAGGTGAACATATAA
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