mRNA_F-serratus_M_contig737.18609.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig737.18609.1
Unique NamemRNA_F-serratus_M_contig737.18609.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig737contigF-serratus_M_contig737:134842..135582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig737.18609.1prot_F-serratus_M_contig737.18609.1Fucus serratus malepolypeptideF-serratus_M_contig737 135168..135578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932233.990851-UTR-F-serratus_M_contig737:134841..1351671622932233.990851-UTR-F-serratus_M_contig737:134841..135167Fucus serratus maleUTRF-serratus_M_contig737 134842..135167 +
1690964211.041392-UTR-F-serratus_M_contig737:134841..1351671690964211.041392-UTR-F-serratus_M_contig737:134841..135167Fucus serratus maleUTRF-serratus_M_contig737 134842..135167 +
1622932234.0300975-UTR-F-serratus_M_contig737:135578..1355821622932234.0300975-UTR-F-serratus_M_contig737:135578..135582Fucus serratus maleUTRF-serratus_M_contig737 135579..135582 +
1690964211.072848-UTR-F-serratus_M_contig737:135578..1355821690964211.072848-UTR-F-serratus_M_contig737:135578..135582Fucus serratus maleUTRF-serratus_M_contig737 135579..135582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932234.01024-CDS-F-serratus_M_contig737:135167..1355781622932234.01024-CDS-F-serratus_M_contig737:135167..135578Fucus serratus maleCDSF-serratus_M_contig737 135168..135578 +
1690964211.0506434-CDS-F-serratus_M_contig737:135167..1355781690964211.0506434-CDS-F-serratus_M_contig737:135167..135578Fucus serratus maleCDSF-serratus_M_contig737 135168..135578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig737.18609.1

>prot_F-serratus_M_contig737.18609.1 ID=prot_F-serratus_M_contig737.18609.1|Name=mRNA_F-serratus_M_contig737.18609.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MRCCCCSLKCSVRGSSSCCSRATPVPTPRPHGLLDIYFFSATEDYHYRRS
RSSEAGMPEHALLRQGDPCVDHHAAILKRDRTGLPVSAAERMPTNRRSAQ
KINNSTVFFQGRWARRVPHCCASEANFSLASAHANT*
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mRNA from alignment at F-serratus_M_contig737:134842..135582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig737.18609.1 ID=mRNA_F-serratus_M_contig737.18609.1|Name=mRNA_F-serratus_M_contig737.18609.1|organism=Fucus serratus male|type=mRNA|length=741bp|location=Sequence derived from alignment at F-serratus_M_contig737:134842..135582+ (Fucus serratus male)
CGCCGAGGTTGGTGTACAGTCCTCGAGGACGCGGGAGAAGCGGTATTGCC
TGACCTCACCCAAAACACCGGCGAACGGACGGAGGATTGGTAGGCAGAAA
TATATCCCGTGAGTAAGCACCATATTCAGCCTGAGTGATGACACAATGAG
CAAGCTGGTGCGGAACGGGGACAAGGAAATGTCCATTGTTCCTGTTCAGC
TGCACGAGCAGGACCGGCAACCTTGCCCGGTTGATTCATACTCTTGCGAT
AATAAGTGATGATAATACTAAACATGCATACTCAGTAACCAAGAGACATC
AATAGCCTACTGATTCTTGTAACTGTATGAGATGCTGCTGTTGCAGTCTG
AAGTGCTCCGTACGGGGGTCGTCCTCCTGCTGCAGCCGCGCCACCCCGGT
ACCAACCCCGCGTCCACATGGCCTCCTAGATATATATTTTTTCTCCGCCA
CCGAAGACTATCACTACAGACGGTCACGGTCGTCGGAGGCGGGGATGCCC
GAGCACGCGCTGCTGCGCCAGGGCGACCCCTGTGTGGATCACCATGCCGC
CATATTGAAGCGAGATCGTACAGGGTTGCCTGTCTCGGCCGCTGAGCGCA
TGCCAACAAACCGTCGTTCAGCACAGAAAATTAATAATTCCACAGTGTTT
TTCCAAGGTCGCTGGGCGAGACGGGTTCCGCACTGCTGTGCAAGCGAAGC
GAACTTCTCTCTAGCCTCCGCACACGCAAACACATAAAGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig737:134842..135582+

>mRNA_F-serratus_M_contig737.18609.1 ID=mRNA_F-serratus_M_contig737.18609.1|Name=mRNA_F-serratus_M_contig737.18609.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig737:134842..135582+ (Fucus serratus male)
ATGAGATGCTGCTGTTGCAGTCTGAAGTGCTCCGTACGGGGGTCGTCCTC
CTGCTGCAGCCGCGCCACCCCGGTACCAACCCCGCGTCCACATGGCCTCC
TAGATATATATTTTTTCTCCGCCACCGAAGACTATCACTACAGACGGTCA
CGGTCGTCGGAGGCGGGGATGCCCGAGCACGCGCTGCTGCGCCAGGGCGA
CCCCTGTGTGGATCACCATGCCGCCATATTGAAGCGAGATCGTACAGGGT
TGCCTGTCTCGGCCGCTGAGCGCATGCCAACAAACCGTCGTTCAGCACAG
AAAATTAATAATTCCACAGTGTTTTTCCAAGGTCGCTGGGCGAGACGGGT
TCCGCACTGCTGTGCAAGCGAAGCGAACTTCTCTCTAGCCTCCGCACACG
CAAACACATAAATGAGATGCTGCTGTTGCAGTCTGAAGTGCTCCGTACGG
GGGTCGTCCTCCTGCTGCAGCCGCGCCACCCCGGTACCAACCCCGCGTCC
ACATGGCCTCCTAGATATATATTTTTTCTCCGCCACCGAAGACTATCACT
ACAGACGGTCACGGTCGTCGGAGGCGGGGATGCCCGAGCACGCGCTGCTG
CGCCAGGGCGACCCCTGTGTGGATCACCATGCCGCCATATTGAAGCGAGA
TCGTACAGGGTTGCCTGTCTCGGCCGCTGAGCGCATGCCAACAAACCGTC
GTTCAGCACAGAAAATTAATAATTCCACAGTGTTTTTCCAAGGTCGCTGG
GCGAGACGGGTTCCGCACTGCTGTGCAAGCGAAGCGAACTTCTCTCTAGC
CTCCGCACACGCAAACACATAA
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