mRNA_F-serratus_M_contig7364.18604.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7364.18604.1
Unique NamemRNA_F-serratus_M_contig7364.18604.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7364.18604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7364contigF-serratus_M_contig7364:18552..18950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932232.7463477-UTR-F-serratus_M_contig7364:18551..186501622932232.7463477-UTR-F-serratus_M_contig7364:18551..18650Fucus serratus maleUTRF-serratus_M_contig7364 18552..18650 +
1690964210.3282378-UTR-F-serratus_M_contig7364:18551..186501690964210.3282378-UTR-F-serratus_M_contig7364:18551..18650Fucus serratus maleUTRF-serratus_M_contig7364 18552..18650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932232.7659395-CDS-F-serratus_M_contig7364:18650..189501622932232.7659395-CDS-F-serratus_M_contig7364:18650..18950Fucus serratus maleCDSF-serratus_M_contig7364 18651..18950 +
1690964210.3403924-CDS-F-serratus_M_contig7364:18650..189501690964210.3403924-CDS-F-serratus_M_contig7364:18650..18950Fucus serratus maleCDSF-serratus_M_contig7364 18651..18950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7364.18604.1prot_F-serratus_M_contig7364.18604.1Fucus serratus malepolypeptideF-serratus_M_contig7364 18651..18950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7364.18604.1

>prot_F-serratus_M_contig7364.18604.1 ID=prot_F-serratus_M_contig7364.18604.1|Name=mRNA_F-serratus_M_contig7364.18604.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MEQQRTNRLDAAGSAGAAGDEAESVSGPSIMHNVRVLQELTRYVAERVEL
ERTYFPWRGFGGEGAPLRFLKQQARLLWKRLCRISHSSLAFTTGWRPRAA
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mRNA from alignment at F-serratus_M_contig7364:18552..18950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7364.18604.1 ID=mRNA_F-serratus_M_contig7364.18604.1|Name=mRNA_F-serratus_M_contig7364.18604.1|organism=Fucus serratus male|type=mRNA|length=399bp|location=Sequence derived from alignment at F-serratus_M_contig7364:18552..18950+ (Fucus serratus male)
GTGTAAGGTTGGTGCATAAAGCACTTCTGAGCCAAAGTTGCAAGACAGAC
CAAAACCGTCGAGGTGCCACTGGCAAAGAAGCCGCGGGTGCTCTCCGGCA
TGGAGCAGCAACGCACCAACAGACTGGATGCCGCTGGGAGTGCGGGTGCC
GCTGGAGATGAGGCGGAGAGCGTCTCGGGGCCAAGCATCATGCACAATGT
CCGTGTTCTCCAAGAGCTGACGAGGTATGTAGCAGAAAGGGTGGAGCTGG
AAAGGACGTATTTTCCTTGGCGGGGTTTTGGCGGCGAAGGGGCTCCCCTA
CGTTTTCTCAAGCAACAGGCGAGGTTATTGTGGAAGCGGTTATGTCGCAT
CTCTCACTCCTCGCTCGCTTTTACCACGGGGTGGAGGCCACGAGCTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7364:18552..18950+

>mRNA_F-serratus_M_contig7364.18604.1 ID=mRNA_F-serratus_M_contig7364.18604.1|Name=mRNA_F-serratus_M_contig7364.18604.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig7364:18552..18950+ (Fucus serratus male)
ATGGAGCAGCAACGCACCAACAGACTGGATGCCGCTGGGAGTGCGGGTGC
CGCTGGAGATGAGGCGGAGAGCGTCTCGGGGCCAAGCATCATGCACAATG
TCCGTGTTCTCCAAGAGCTGACGAGGTATGTAGCAGAAAGGGTGGAGCTG
GAAAGGACGTATTTTCCTTGGCGGGGTTTTGGCGGCGAAGGGGCTCCCCT
ACGTTTTCTCAAGCAACAGGCGAGGTTATTGTGGAAGCGGTTATGTCGCA
TCTCTCACTCCTCGCTCGCTTTTACCACGGGGTGGAGGCCACGAGCTGCC
ATGGAGCAGCAACGCACCAACAGACTGGATGCCGCTGGGAGTGCGGGTGC
CGCTGGAGATGAGGCGGAGAGCGTCTCGGGGCCAAGCATCATGCACAATG
TCCGTGTTCTCCAAGAGCTGACGAGGTATGTAGCAGAAAGGGTGGAGCTG
GAAAGGACGTATTTTCCTTGGCGGGGTTTTGGCGGCGAAGGGGCTCCCCT
ACGTTTTCTCAAGCAACAGGCGAGGTTATTGTGGAAGCGGTTATGTCGCA
TCTCTCACTCCTCGCTCGCTTTTACCACGGGGTGGAGGCCACGAGCTGCC
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