mRNA_F-serratus_M_contig736.18599.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig736.18599.1
Unique NamemRNA_F-serratus_M_contig736.18599.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig736.18599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig736contigF-serratus_M_contig736:256237..259214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2082
Cds size1779
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig736.18599.1prot_F-serratus_M_contig736.18599.1Fucus serratus malepolypeptideF-serratus_M_contig736 256540..259214 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.775083-UTR-F-serratus_M_contig736:256236..2565391622932229.775083-UTR-F-serratus_M_contig736:256236..256539Fucus serratus maleUTRF-serratus_M_contig736 256237..256539 +
1690964208.751711-UTR-F-serratus_M_contig736:256236..2565391690964208.751711-UTR-F-serratus_M_contig736:256236..256539Fucus serratus maleUTRF-serratus_M_contig736 256237..256539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.7985065-CDS-F-serratus_M_contig736:256539..2568551622932229.7985065-CDS-F-serratus_M_contig736:256539..256855Fucus serratus maleCDSF-serratus_M_contig736 256540..256855 +
1690964208.772406-CDS-F-serratus_M_contig736:256539..2568551690964208.772406-CDS-F-serratus_M_contig736:256539..256855Fucus serratus maleCDSF-serratus_M_contig736 256540..256855 +
1622932229.822612-CDS-F-serratus_M_contig736:257751..2592141622932229.822612-CDS-F-serratus_M_contig736:257751..259214Fucus serratus maleCDSF-serratus_M_contig736 257752..259214 +
1690964208.7834198-CDS-F-serratus_M_contig736:257751..2592141690964208.7834198-CDS-F-serratus_M_contig736:257751..259214Fucus serratus maleCDSF-serratus_M_contig736 257752..259214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig736.18599.1

>prot_F-serratus_M_contig736.18599.1 ID=prot_F-serratus_M_contig736.18599.1|Name=mRNA_F-serratus_M_contig736.18599.1|organism=Fucus serratus male|type=polypeptide|length=593bp
MANPVRCDSYSDHGNTVNSISSSINLVGSIDEKIIDRLRAQLLRIRVAGK
LGQDFLMNKHIMELEALCREACTDNDAVLHTNVLRDLWDVLKHGRGEFWG
ARQCSPQPLCSLSEDAAAISKARYILQHATSKDAGIDKGGKRRSHHAMNP
SRAEESIDHISSATVPSPADVLPLPVPAETLGASVAVNACLDSIHANQEE
VNDIARTLFDPGVDWANAVARLAKWHRMAEKSPPPPPPPPPPRTLETAGF
PARGEAIETISASGVEAEILTSPLADSGLLDEERQDTDTDRIRQCDRLEN
VKPTSKADRGQSLGKEEKGQPHTFKPTGNVNDIGRNEGYIAQFARQGVIP
ETNSSQRHAYEVLGLENQSQPGEPLRRGSTETSWRFPPTASPALSTKLSA
SIPQRPVLQAGRPGEEKRKKGKSWPIEASHCCSRESEGYYGRHRASTHRL
ELCSVECNIFHDFPDGRGQQMEKRAEQNTDAALDIGSSPTSHQKNETGKA
IEQVPCLHFGDENLSDGHSTAPFSESEKRWSSETSLGLTPLSPKSCAVPF
TCESVTPQRRKGLRRFVAMRRSQVREGKPSLPLMSKDVRSSST
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mRNA from alignment at F-serratus_M_contig736:256237..259214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig736.18599.1 ID=mRNA_F-serratus_M_contig736.18599.1|Name=mRNA_F-serratus_M_contig736.18599.1|organism=Fucus serratus male|type=mRNA|length=2978bp|location=Sequence derived from alignment at F-serratus_M_contig736:256237..259214+ (Fucus serratus male)
ATTTTTCTGAGAATAATTAAGAGATACTACTACTATAGATCGATCGGTGG
ATTGGTCGGTTCGTACTCCTACGGAAATCTTTCCCACCCTGCCCATTTAT
GAACATGCTCAGAGATCCTCGAAGCGATCCTCCTGTCTCGTCCTGGCTTG
TGCGCCTCTGGTAGGGCACCGATTACTTCCAAGATATTCGAAGGTCATAG
GAATGTCGTGCGGATCCTGCTCCGAAAGGCCAACAGTCCAAGGATCGGTC
GAGCGTTGGTGAATTTTGTCCGGTCCGATAGTCAAGGTCATCAAGGGTGG
GAAATGGCTAATCCTGTCCGTTGCGACAGCTATTCCGACCACGGCAACAC
CGTCAACAGTATCAGCAGCAGCATAAATCTCGTCGGCAGCATTGACGAGA
AAATTATCGACCGATTGCGGGCGCAGCTGCTGCGGATACGTGTCGCGGGG
AAGCTGGGACAAGACTTCTTGATGAACAAACATATCATGGAGCTGGAGGC
ACTTTGCCGTGAAGCTTGCACGGACAATGACGCCGTCCTCCACACTAATG
TCTTACGAGACCTATGGGACGTGCTGAAGCATGGGCGGGGCGAGTTTTGG
GGGGCTCGACAGTGCAGCCGTGAGTGTGCCATGCAGACGTACAACGTACT
ACTATACTGTAGCAATGAATGCCGTATCATCGCCGACACACTTTTTTTTG
CCTGTAGGCTGTTGTCGCCCCGTGTACCATAATTATCAATTATTATTACA
ACAGCATAGTCTATAGCTCCAGTAGGGTATTTTACTATTCAGTATTATAA
TATACCTGGTAATATATATAATAGTAGTCGAAAGGCAACCAAGAGGTGAG
AATTCGTAATTTCGAAGATGATCCTATCATGATATTTTTTACTAGTTTCT
GAAAGCGCGACGCTTATAATATACCGGTAATAAGAAAAGTTAAATCATGA
GTTGCCAACGAAATTTCTGAACTACTTGCACAGCCATAGAATATCGCGGG
TGTGGACCGGCGAGAGATGGGTTGATCCCTTCGCAACCACGGGCGGCATG
GGCAACGTTGATTCGTTGAGTAGGTCCATCAAGAGAAAGTGAGAAATAAA
CATATCCTACCAGGTAGTTCGTTATCGACTCAGGAGGGAAAGGACTAACA
GACACGTGTGCCCTGTCAAGAGCTAATAATATTAATCCAGGTGGTGGTCC
GTGGCAAATCATCCAGCCAACCCCGATTGTTCAACATTTTCGGCATGCAC
AACGCGTACTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAA
ACAACAACAACAACAACTACCCGGAACGTATCATTAACTCGGCAAGTAAA
CGAGGGAAGGAACCTGATTCAGCTCTTGGGTACTTTCTGCCGTGCAAGCG
TTCACAGTGCTCCACCTTTCCGGGTTGTAACCCTTCGGCTTACGCCTGAC
TCCAGTCGATCAAACTTCAACCTCGCTTCCCCTTACACACATCGACTCGG
TATTCCGTTAAACAGCTCAGCCACTTTGTTCCCTGTCGGAGGATGCTGCT
GCGATCTCCAAGGCCAGATATATCTTGCAGCACGCCACTTCAAAAGACGC
CGGGATTGACAAGGGCGGGAAGAGACGTTCTCATCACGCCATGAACCCAT
CGCGAGCCGAGGAATCCATAGATCATATCTCTTCTGCGACGGTCCCAAGC
CCTGCGGATGTATTGCCCCTACCTGTCCCCGCCGAAACCCTGGGCGCCTC
TGTCGCCGTAAATGCGTGCCTAGATTCAATCCACGCCAATCAGGAAGAGG
TGAACGACATCGCGAGAACCTTGTTCGACCCCGGCGTAGACTGGGCGAAC
GCCGTGGCTCGATTGGCGAAATGGCATAGGATGGCGGAGAAGTCGCCGCC
GCCGCCGCCGCCGCCGCCGCCTCCAAGGACGCTTGAGACGGCTGGATTTC
CGGCTAGAGGGGAAGCCATTGAGACGATTAGCGCGAGCGGTGTAGAGGCC
GAAATATTGACTTCCCCTCTTGCCGACAGTGGATTGCTAGACGAAGAGAG
ACAAGATACAGATACCGACAGGATTCGGCAGTGTGATCGCTTAGAAAACG
TAAAACCGACCTCGAAGGCCGATCGGGGACAGTCACTCGGGAAGGAGGAA
AAGGGACAACCACACACGTTCAAACCCACTGGGAATGTAAACGATATCGG
CAGAAACGAGGGATACATTGCTCAGTTTGCTCGGCAGGGCGTAATTCCTG
AGACAAACAGCAGCCAGCGCCACGCCTATGAAGTTCTCGGGTTGGAGAAT
CAGTCGCAGCCCGGGGAGCCTCTCCGCCGCGGTTCCACCGAGACTTCATG
GCGTTTCCCACCCACGGCGTCACCGGCACTATCAACCAAACTATCAGCAT
CGATACCGCAGCGTCCCGTGCTGCAAGCCGGACGCCCAGGGGAGGAGAAA
AGAAAGAAAGGTAAATCTTGGCCGATAGAGGCTAGCCACTGCTGCTCTAG
AGAAAGTGAAGGTTACTATGGACGTCATCGAGCCAGTACACACCGTCTAG
AGCTGTGTTCGGTTGAGTGCAACATTTTTCACGATTTCCCTGATGGAAGG
GGTCAACAAATGGAGAAGAGGGCTGAGCAGAATACGGACGCCGCCCTCGA
CATCGGATCCTCGCCTACCAGCCACCAAAAAAATGAGACCGGAAAGGCGA
TCGAACAAGTTCCTTGCCTCCACTTCGGGGACGAAAATCTATCTGACGGC
CATTCCACGGCACCTTTCTCGGAGTCGGAGAAGAGGTGGTCATCCGAAAC
ATCCTTAGGCCTGACTCCACTGAGCCCAAAATCTTGCGCGGTACCGTTTA
CCTGTGAAAGCGTTACTCCGCAGCGAAGGAAAGGGTTGCGCCGATTTGTG
GCAATGCGCCGCAGCCAAGTGAGGGAGGGGAAACCCAGCCTGCCGCTAAT
GTCGAAGGACGTGAGATCGTCATCCACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig736:256237..259214+

>mRNA_F-serratus_M_contig736.18599.1 ID=mRNA_F-serratus_M_contig736.18599.1|Name=mRNA_F-serratus_M_contig736.18599.1|organism=Fucus serratus male|type=CDS|length=3558bp|location=Sequence derived from alignment at F-serratus_M_contig736:256237..259214+ (Fucus serratus male)
ATGGCTAATCCTGTCCGTTGCGACAGCTATTCCGACCACGGCAACACCGT
CAACAGTATCAGCAGCAGCATAAATCTCGTCGGCAGCATTGACGAGAAAA
TTATCGACCGATTGCGGGCGCAGCTGCTGCGGATACGTGTCGCGGGGAAG
CTGGGACAAGACTTCTTGATGAACAAACATATCATGGAGCTGGAGGCACT
TTGCCGTGAAGCTTGCACGGACAATGACGCCGTCCTCCACACTAATGTCT
TACGAGACCTATGGGACGTGCTGAAGCATGGGCGGGGCGAGTTTTGGGGG
GCTCGACAGTGCAGCCATGGCTAATCCTGTCCGTTGCGACAGCTATTCCG
ACCACGGCAACACCGTCAACAGTATCAGCAGCAGCATAAATCTCGTCGGC
AGCATTGACGAGAAAATTATCGACCGATTGCGGGCGCAGCTGCTGCGGAT
ACGTGTCGCGGGGAAGCTGGGACAAGACTTCTTGATGAACAAACATATCA
TGGAGCTGGAGGCACTTTGCCGTGAAGCTTGCACGGACAATGACGCCGTC
CTCCACACTAATGTCTTACGAGACCTATGGGACGTGCTGAAGCATGGGCG
GGGCGAGTTTTGGGGGGCTCGACAGTGCAGCCCTCAGCCACTTTGTTCCC
TGTCGGAGGATGCTGCTGCGATCTCCAAGGCCAGATATATCTTGCAGCAC
GCCACTTCAAAAGACGCCGGGATTGACAAGGGCGGGAAGAGACGTTCTCA
TCACGCCATGAACCCATCGCGAGCCGAGGAATCCATAGATCATATCTCTT
CTGCGACGGTCCCAAGCCCTGCGGATGTATTGCCCCTACCTGTCCCCGCC
GAAACCCTGGGCGCCTCTGTCGCCGTAAATGCGTGCCTAGATTCAATCCA
CGCCAATCAGGAAGAGGTGAACGACATCGCGAGAACCTTGTTCGACCCCG
GCGTAGACTGGGCGAACGCCGTGGCTCGATTGGCGAAATGGCATAGGATG
GCGGAGAAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCAAGGACGCT
TGAGACGGCTGGATTTCCGGCTAGAGGGGAAGCCATTGAGACGATTAGCG
CGAGCGGTGTAGAGGCCGAAATATTGACTTCCCCTCTTGCCGACAGTGGA
TTGCTAGACGAAGAGAGACAAGATACAGATACCGACAGGATTCGGCAGTG
TGATCGCTTAGAAAACGTAAAACCGACCTCGAAGGCCGATCGGGGACAGT
CACTCGGGAAGGAGGAAAAGGGACAACCACACACGTTCAAACCCACTGGG
AATGTAAACGATATCGGCAGAAACGAGGGATACATTGCTCAGTTTGCTCG
GCAGGGCGTAATTCCTGAGACAAACAGCAGCCAGCGCCACGCCTATGAAG
TTCTCGGGTTGGAGAATCAGTCGCAGCCCGGGGAGCCTCTCCGCCGCGGT
TCCACCGAGACTTCATGGCGTTTCCCACCCACGGCGTCACCGGCACTATC
AACCAAACTATCAGCATCGATACCGCAGCGTCCCGTGCTGCAAGCCGGAC
GCCCAGGGGAGGAGAAAAGAAAGAAAGGTAAATCTTGGCCGATAGAGGCT
AGCCACTGCTGCTCTAGAGAAAGTGAAGGTTACTATGGACGTCATCGAGC
CAGTACACACCGTCTAGAGCTGTGTTCGGTTGAGTGCAACATTTTTCACG
ATTTCCCTGATGGAAGGGGTCAACAAATGGAGAAGAGGGCTGAGCAGAAT
ACGGACGCCGCCCTCGACATCGGATCCTCGCCTACCAGCCACCAAAAAAA
TGAGACCGGAAAGGCGATCGAACAAGTTCCTTGCCTCCACTTCGGGGACG
AAAATCTATCTGACGGCCATTCCACGGCACCTTTCTCGGAGTCGGAGAAG
AGGTGGTCATCCGAAACATCCTTAGGCCTGACTCCACTGAGCCCAAAATC
TTGCGCGGTACCGTTTACCTGTGAAAGCGTTACTCCGCAGCGAAGGAAAG
GGTTGCGCCGATTTGTGGCAATGCGCCGCAGCCAAGTGAGGGAGGGGAAA
CCCAGCCTGCCGCTAATGTCGAAGGACGTGAGATCGTCATCCACACTCAG
CCACTTTGTTCCCTGTCGGAGGATGCTGCTGCGATCTCCAAGGCCAGATA
TATCTTGCAGCACGCCACTTCAAAAGACGCCGGGATTGACAAGGGCGGGA
AGAGACGTTCTCATCACGCCATGAACCCATCGCGAGCCGAGGAATCCATA
GATCATATCTCTTCTGCGACGGTCCCAAGCCCTGCGGATGTATTGCCCCT
ACCTGTCCCCGCCGAAACCCTGGGCGCCTCTGTCGCCGTAAATGCGTGCC
TAGATTCAATCCACGCCAATCAGGAAGAGGTGAACGACATCGCGAGAACC
TTGTTCGACCCCGGCGTAGACTGGGCGAACGCCGTGGCTCGATTGGCGAA
ATGGCATAGGATGGCGGAGAAGTCGCCGCCGCCGCCGCCGCCGCCGCCGC
CTCCAAGGACGCTTGAGACGGCTGGATTTCCGGCTAGAGGGGAAGCCATT
GAGACGATTAGCGCGAGCGGTGTAGAGGCCGAAATATTGACTTCCCCTCT
TGCCGACAGTGGATTGCTAGACGAAGAGAGACAAGATACAGATACCGACA
GGATTCGGCAGTGTGATCGCTTAGAAAACGTAAAACCGACCTCGAAGGCC
GATCGGGGACAGTCACTCGGGAAGGAGGAAAAGGGACAACCACACACGTT
CAAACCCACTGGGAATGTAAACGATATCGGCAGAAACGAGGGATACATTG
CTCAGTTTGCTCGGCAGGGCGTAATTCCTGAGACAAACAGCAGCCAGCGC
CACGCCTATGAAGTTCTCGGGTTGGAGAATCAGTCGCAGCCCGGGGAGCC
TCTCCGCCGCGGTTCCACCGAGACTTCATGGCGTTTCCCACCCACGGCGT
CACCGGCACTATCAACCAAACTATCAGCATCGATACCGCAGCGTCCCGTG
CTGCAAGCCGGACGCCCAGGGGAGGAGAAAAGAAAGAAAGGTAAATCTTG
GCCGATAGAGGCTAGCCACTGCTGCTCTAGAGAAAGTGAAGGTTACTATG
GACGTCATCGAGCCAGTACACACCGTCTAGAGCTGTGTTCGGTTGAGTGC
AACATTTTTCACGATTTCCCTGATGGAAGGGGTCAACAAATGGAGAAGAG
GGCTGAGCAGAATACGGACGCCGCCCTCGACATCGGATCCTCGCCTACCA
GCCACCAAAAAAATGAGACCGGAAAGGCGATCGAACAAGTTCCTTGCCTC
CACTTCGGGGACGAAAATCTATCTGACGGCCATTCCACGGCACCTTTCTC
GGAGTCGGAGAAGAGGTGGTCATCCGAAACATCCTTAGGCCTGACTCCAC
TGAGCCCAAAATCTTGCGCGGTACCGTTTACCTGTGAAAGCGTTACTCCG
CAGCGAAGGAAAGGGTTGCGCCGATTTGTGGCAATGCGCCGCAGCCAAGT
GAGGGAGGGGAAACCCAGCCTGCCGCTAATGTCGAAGGACGTGAGATCGT
CATCCACA
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