mRNA_F-serratus_M_contig7358.18584.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7358.18584.1
Unique NamemRNA_F-serratus_M_contig7358.18584.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A7I8J9K8_SPIIN (Histone H4 n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J9K8_SPIIN)

HSP 1 Score: 179 bits (454), Expect = 3.190e-56
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:   25 KHVRTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            ++VR+ KGREG+G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 RNVRSGKGREGAGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A2J6LKC2_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LKC2_LACSA)

HSP 1 Score: 177 bits (448), Expect = 1.990e-54
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:   31 VRTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            VRT KGR+G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   89 VRTWKGRKGFGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 190
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: UPI001BE4C7AC (histone H4-like n=1 Tax=Anopheles merus TaxID=30066 RepID=UPI001BE4C7AC)

HSP 1 Score: 174 bits (441), Expect = 5.580e-54
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:   28 HVRTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            H   RKGR+G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   43 HDWKRKGRKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 145
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A671WNM0_SPAAU (Histone H4 n=2 Tax=Sparus aurata TaxID=8175 RepID=A0A671WNM0_SPAAU)

HSP 1 Score: 172 bits (436), Expect = 8.530e-54
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:   34 RTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            R RKG +G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 RQRKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.210e-53
Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:   43 KGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            KG +G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.210e-53
Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:   43 KGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            KG +G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 171 bits (434), Expect = 1.720e-53
Identity = 88/98 (89.80%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:   43 KGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            KG +G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A3P9M5H4_ORYLA (Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=A0A3P9M5H4_ORYLA)

HSP 1 Score: 171 bits (434), Expect = 1.890e-53
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:   25 KHVRTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            K +R  KG +G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 KSLRRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
[Close]
BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A1I8PLR9_STOCA (Histone H4 n=6 Tax=Bilateria TaxID=33213 RepID=A0A1I8PLR9_STOCA)

HSP 1 Score: 171 bits (434), Expect = 1.890e-53
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:   19 SFKHVRTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            SF   +T KG+ G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 SFSRPKTHKGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
[Close]
BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.420e-53
Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:   43 KGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            KG +G G+G  K   KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   28 KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7358.18584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7I8J9K8_SPIIN3.190e-5687.50Histone H4 n=1 Tax=Spirodela intermedia TaxID=5160... [more]
A0A2J6LKC2_LACSA1.990e-5489.22Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
UPI001BE4C7AC5.580e-5487.38histone H4-like n=1 Tax=Anopheles merus TaxID=3006... [more]
A0A671WNM0_SPAAU8.530e-5488.12Histone H4 n=2 Tax=Sparus aurata TaxID=8175 RepID=... [more]
A0A024G0M5_9STRA1.210e-5390.82Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
F0W2L9_9STRA1.210e-5390.82Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
H4_SOLLC1.720e-5389.80Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A3P9M5H4_ORYLA1.890e-5385.58Histone H4 n=2 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A1I8PLR9_STOCA1.890e-5384.91Histone H4 n=6 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A3L6V663_9STRA2.420e-5390.82Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7358contigF-serratus_M_contig7358:4623..4961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score174.1
Seed ortholog evalue3.7e-41
Seed eggNOG ortholog4098.XP_009612961.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs37UE8@33090,3GIMJ@35493,44TK3@71274,COG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.5679936-CDS-F-serratus_M_contig7358:4622..49611622932229.5679936-CDS-F-serratus_M_contig7358:4622..4961Fucus serratus maleCDSF-serratus_M_contig7358 4623..4961 +
1690964208.6865113-CDS-F-serratus_M_contig7358:4622..49611690964208.6865113-CDS-F-serratus_M_contig7358:4622..4961Fucus serratus maleCDSF-serratus_M_contig7358 4623..4961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7358.18584.1prot_F-serratus_M_contig7358.18584.1Fucus serratus malepolypeptideF-serratus_M_contig7358 4623..4961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7358.18584.1

>prot_F-serratus_M_contig7358.18584.1 ID=prot_F-serratus_M_contig7358.18584.1|Name=mRNA_F-serratus_M_contig7358.18584.1|organism=Fucus serratus male|type=polypeptide|length=113bp
TRQHPASFKHVRTRKGREGSGQGWCKAPPKVLRDNIQGITKPAIRRLARR
GGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYAL
KRQGRTLYGFGG*
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mRNA from alignment at F-serratus_M_contig7358:4623..4961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7358.18584.1 ID=mRNA_F-serratus_M_contig7358.18584.1|Name=mRNA_F-serratus_M_contig7358.18584.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig7358:4623..4961+ (Fucus serratus male)
ACGAGACAGCACCCAGCAAGTTTCAAACATGTCCGGACGCGGAAAGGGAG
GGAAGGGTCTGGGCAAGGGTGGTGCAAAGCGCCACCGAAGGTTCTACGCG
ACAACATCCAGGGTATCACCAAGCCCGCGATCCGCCGGCTGGCCCGTCGT
GGCGGTGTAAAGCGTATCTCTGGCCTTATCTACGAGGAAACGCGCGGTGT
GCTCAAGGTATTCTTGGAGAACGTCATCCGCGACTCGGTGACCTACACAG
AGCACGCTCGCCGTAAGACTGTGACGGCAATGGATGTGGTGTACGCTCTT
AAGCGCCAGGGCCGCACCCTCTACGGTTTTGGCGGCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7358:4623..4961+

>mRNA_F-serratus_M_contig7358.18584.1 ID=mRNA_F-serratus_M_contig7358.18584.1|Name=mRNA_F-serratus_M_contig7358.18584.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig7358:4623..4961+ (Fucus serratus male)
ACGAGACAGCACCCAGCAAGTTTCAAACATGTCCGGACGCGGAAAGGGAG
GGAAGGGTCTGGGCAAGGGTGGTGCAAAGCGCCACCGAAGGTTCTACGCG
ACAACATCCAGGGTATCACCAAGCCCGCGATCCGCCGGCTGGCCCGTCGT
GGCGGTGTAAAGCGTATCTCTGGCCTTATCTACGAGGAAACGCGCGGTGT
GCTCAAGGTATTCTTGGAGAACGTCATCCGCGACTCGGTGACCTACACAG
AGCACGCTCGCCGTAAGACTGTGACGGCAATGGATGTGGTGTACGCTCTT
AAGCGCCAGGGCCGCACCCTCTACGGTTTTGGCGGCTAAACGAGACAGCA
CCCAGCAAGTTTCAAACATGTCCGGACGCGGAAAGGGAGGGAAGGGTCTG
GGCAAGGGTGGTGCAAAGCGCCACCGAAGGTTCTACGCGACAACATCCAG
GGTATCACCAAGCCCGCGATCCGCCGGCTGGCCCGTCGTGGCGGTGTAAA
GCGTATCTCTGGCCTTATCTACGAGGAAACGCGCGGTGTGCTCAAGGTAT
TCTTGGAGAACGTCATCCGCGACTCGGTGACCTACACAGAGCACGCTCGC
CGTAAGACTGTGACGGCAATGGATGTGGTGTACGCTCTTAAGCGCCAGGG
CCGCACCCTCTACGGTTTTGGCGGCTAA
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