mRNA_F-serratus_M_contig735.18580.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig735.18580.1
Unique NamemRNA_F-serratus_M_contig735.18580.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig735.18580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig735contigF-serratus_M_contig735:286769..287349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.012329-UTR-F-serratus_M_contig735:286768..2869831622932229.012329-UTR-F-serratus_M_contig735:286768..286983Fucus serratus maleUTRF-serratus_M_contig735 286769..286983 -
1690964208.3983724-UTR-F-serratus_M_contig735:286768..2869831690964208.3983724-UTR-F-serratus_M_contig735:286768..286983Fucus serratus maleUTRF-serratus_M_contig735 286769..286983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.0329432-CDS-F-serratus_M_contig735:286983..2873491622932229.0329432-CDS-F-serratus_M_contig735:286983..287349Fucus serratus maleCDSF-serratus_M_contig735 286984..287349 -
1690964208.4104843-CDS-F-serratus_M_contig735:286983..2873491690964208.4104843-CDS-F-serratus_M_contig735:286983..287349Fucus serratus maleCDSF-serratus_M_contig735 286984..287349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig735.18580.1prot_F-serratus_M_contig735.18580.1Fucus serratus malepolypeptideF-serratus_M_contig735 286984..287349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig735.18580.1

>prot_F-serratus_M_contig735.18580.1 ID=prot_F-serratus_M_contig735.18580.1|Name=mRNA_F-serratus_M_contig735.18580.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MTCRGTAKCHQTKDKEKRLAPNSWVIFLRTHKRHFSSIGEVSLHYVKLKT
HVVKKLVAIAGNNLTTKQTKAEYKKHICANFYKHMDKAGKNARENKKKMS
NDVILFLKKTSPTAGGNGGQE*
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mRNA from alignment at F-serratus_M_contig735:286769..287349-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig735.18580.1 ID=mRNA_F-serratus_M_contig735.18580.1|Name=mRNA_F-serratus_M_contig735.18580.1|organism=Fucus serratus male|type=mRNA|length=581bp|location=Sequence derived from alignment at F-serratus_M_contig735:286769..287349- (Fucus serratus male)
ATGACTTGCAGGGGTACGGCCAAATGCCACCAGACAAAAGACAAGGAAAA
ACGTCTTGCTCCCAACTCCTGGGTCATTTTTCTTCGCACCCACAAACGCC
ACTTCTCTTCCATCGGAGAAGTTTCTCTGCACTACGTGAAGTTAAAAACG
CACGTCGTGAAAAAGCTCGTCGCGATCGCGGGCAACAACTTGACTACGAA
ACAGACGAAAGCTGAGTACAAGAAACATATCTGCGCGAATTTTTACAAGC
ACATGGACAAAGCCGGCAAAAACGCGCGGGAAAACAAGAAAAAAATGAGC
AACGATGTTATCCTATTTTTAAAGAAAACATCCCCAACCGCTGGAGGCAA
TGGGGGCCAAGAGTGAATCCGCGGACATCGTCACCAAGGGGAAAAGCCTT
GCGGAAGGCTAGCAAAGCTGTTGAATCCACGGAAAAGGTACAAAAGGAGA
AGGAGCGCAAGGCACTGGCCATGATAAGGAGGGCGGGTGCTGCTGCCGGG
CGCAGACGGGTAGAGAAGAAGGAAGGTCGCCGCGGCCGCAGCCAACGAGA
AACGAGTCAGATCAACCGGTACGAAACGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig735:286769..287349-

>mRNA_F-serratus_M_contig735.18580.1 ID=mRNA_F-serratus_M_contig735.18580.1|Name=mRNA_F-serratus_M_contig735.18580.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig735:286769..287349- (Fucus serratus male)
ATGACTTGCAGGGGTACGGCCAAATGCCACCAGACAAAAGACAAGGAAAA
ACGTCTTGCTCCCAACTCCTGGGTCATTTTTCTTCGCACCCACAAACGCC
ACTTCTCTTCCATCGGAGAAGTTTCTCTGCACTACGTGAAGTTAAAAACG
CACGTCGTGAAAAAGCTCGTCGCGATCGCGGGCAACAACTTGACTACGAA
ACAGACGAAAGCTGAGTACAAGAAACATATCTGCGCGAATTTTTACAAGC
ACATGGACAAAGCCGGCAAAAACGCGCGGGAAAACAAGAAAAAAATGAGC
AACGATGTTATCCTATTTTTAAAGAAAACATCCCCAACCGCTGGAGGCAA
TGGGGGCCAAGAGTGAATGACTTGCAGGGGTACGGCCAAATGCCACCAGA
CAAAAGACAAGGAAAAACGTCTTGCTCCCAACTCCTGGGTCATTTTTCTT
CGCACCCACAAACGCCACTTCTCTTCCATCGGAGAAGTTTCTCTGCACTA
CGTGAAGTTAAAAACGCACGTCGTGAAAAAGCTCGTCGCGATCGCGGGCA
ACAACTTGACTACGAAACAGACGAAAGCTGAGTACAAGAAACATATCTGC
GCGAATTTTTACAAGCACATGGACAAAGCCGGCAAAAACGCGCGGGAAAA
CAAGAAAAAAATGAGCAACGATGTTATCCTATTTTTAAAGAAAACATCCC
CAACCGCTGGAGGCAATGGGGGCCAAGAGTGA
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