mRNA_F-serratus_M_contig734.18577.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig734.18577.1
Unique NamemRNA_F-serratus_M_contig734.18577.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 5.220e-36
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 STMPTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            ST PTYN MVF+AIK LKERNGSSIQAIKK IT T+PTLNFTPHQMRSALKKGVESGKFIK+K+SYKLSAEAKKP
Sbjct:    3 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKP 77
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BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 7.320e-32
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   10 PTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            PTYN MVF+AIK LKERNGSSIQAIKK IT T+PTLNFTPHQMR ALKKGVESGKFIK+K+SYKLS EAKKP
Sbjct:   99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKP 170
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BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.270e-31
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   25 MVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            MVF+AIK LKERNGSSIQAIKK IT T+PTLNFTPHQMRSALKKGVESGKF+K+K+SYKLSAEAKKP
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKP 67
[Close]
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.460e-30
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   25 MVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            MVF+AIK+LKERNGSSIQAIKK IT T+P LNFTPHQMRSALKKGVE+GKFIKVKSSYKLSAEAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
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BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 5.250e-30
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:   10 PTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            PTY+ MVF+AIKALKER GSS+ A+KK I  T+P+LNFTPHQMRSALKKG ESGKFIKVKSSYKLS EAKKP
Sbjct:    7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78
[Close]
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.050e-27
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   25 MVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            MVF+AIKALKER GSS+ A+KK I  T+P+LNFTPHQMRSALKKG ESGKFIKVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67
[Close]
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.680e-27
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    7 MPTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            MPTY+EM   AI ALKERNGSS+ AIKKHI  T+PTLNF PHQ+R ALKKG E+G FIKVK+SYK+S EAKKP
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.170e-26
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    7 MPTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSAEAKKP 225
            MPTY+EM  EA+KALKERNGSS+ AIKKHIT ++P+L FT H MRSALKKGVESGKFIKVK+SYKLSA  ++P
Sbjct:    1 MPTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEP 73
[Close]
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.280e-25
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    7 MPTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSA 210
            MPTY+EM  EA+KALKERNGSS+ AIKKHIT ++P+L FT H +RSALKKGVESGKFIKVK+SYKLSA
Sbjct:    1 MPTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
[Close]
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.280e-22
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   25 MVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLS 207
            MVF+AIK LKERNGSSIQA+KK IT T+P L+FTPHQMRSALKKGVE+GKFIKV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig734.18577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI5.220e-3688.00Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE7.320e-3286.11H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE8.270e-3188.06H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI1.460e-3089.55H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI5.250e-3080.56H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE1.050e-2782.09H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI3.680e-2773.97H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI3.170e-2675.34H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE6.280e-2577.94H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE5.280e-2275.41H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig734contigF-serratus_M_contig734:351931..353382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue3.7e-27
Seed eggNOG ortholog2880.D7G189
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size543
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig734.18577.1prot_F-serratus_M_contig734.18577.1Fucus serratus malepolypeptideF-serratus_M_contig734 351937..353382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932225.89062-UTR-F-serratus_M_contig734:351930..3519361622932225.89062-UTR-F-serratus_M_contig734:351930..351936Fucus serratus maleUTRF-serratus_M_contig734 351931..351936 +
1690964206.9235625-UTR-F-serratus_M_contig734:351930..3519361690964206.9235625-UTR-F-serratus_M_contig734:351930..351936Fucus serratus maleUTRF-serratus_M_contig734 351931..351936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932225.9069748-CDS-F-serratus_M_contig734:351936..3519541622932225.9069748-CDS-F-serratus_M_contig734:351936..351954Fucus serratus maleCDSF-serratus_M_contig734 351937..351954 +
1690964206.936709-CDS-F-serratus_M_contig734:351936..3519541690964206.936709-CDS-F-serratus_M_contig734:351936..351954Fucus serratus maleCDSF-serratus_M_contig734 351937..351954 +
1622932225.9224072-CDS-F-serratus_M_contig734:352154..3523131622932225.9224072-CDS-F-serratus_M_contig734:352154..352313Fucus serratus maleCDSF-serratus_M_contig734 352155..352313 +
1690964206.9475865-CDS-F-serratus_M_contig734:352154..3523131690964206.9475865-CDS-F-serratus_M_contig734:352154..352313Fucus serratus maleCDSF-serratus_M_contig734 352155..352313 +
1622932225.9420285-CDS-F-serratus_M_contig734:353022..3533821622932225.9420285-CDS-F-serratus_M_contig734:353022..353382Fucus serratus maleCDSF-serratus_M_contig734 353023..353382 +
1690964206.959239-CDS-F-serratus_M_contig734:353022..3533821690964206.959239-CDS-F-serratus_M_contig734:353022..353382Fucus serratus maleCDSF-serratus_M_contig734 353023..353382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig734.18577.1

>prot_F-serratus_M_contig734.18577.1 ID=prot_F-serratus_M_contig734.18577.1|Name=mRNA_F-serratus_M_contig734.18577.1|organism=Fucus serratus male|type=polypeptide|length=179bp
MPTYNEMVFEAIKALKERNGSSIQAIKKHITTTHPTLNFTPHQMRSALKK
GVESGKFIKVKSSYKLSAEAKKPAPKPKVKKVVKKVVVTKKVVKKVPKKA
AKPAAKKATTKKAAPTTKKATTPKKATTPKKAATPKKATTPKKTATPKKV
TKKTAAGPKKTVTKKTAGSTAKKPTAPKK
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mRNA from alignment at F-serratus_M_contig734:351931..353382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig734.18577.1 ID=mRNA_F-serratus_M_contig734.18577.1|Name=mRNA_F-serratus_M_contig734.18577.1|organism=Fucus serratus male|type=mRNA|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig734:351931..353382+ (Fucus serratus male)
AGCACTATGCCGACCTACAATGAGGTGCGTGCTTACGTCGGAAGCCTCAT
TTTATGCGTTTGGATAGAGGAACTACGTTGTTTTTTCATGATGGATTTCT
GGGCCTGGGCTCGAGCAATCGTAAAATATAGCGCTTTCCTCTGTAGCAAG
TTGTTCTCTCGGCCCCTGTTACTACGCACCGTTGTAACAGAAACCCGCCC
CTCAAACGTTGTATCCCCTCTCAGATGGTGTTCGAAGCAATCAAGGCCCT
CAAGGAGCGCAACGGTTCCAGCATTCAGGCAATCAAGAAGCACATCACCA
CCACGCACCCAACGCTCAACTTTACCCCTCACCAGATGCGCAGCGCTCTC
AAGAAGGGCGTCGAGTCCGGCAAGTTCATCAAGGTGGGGAAAAGAATAAA
CGGTTGGATATACCTCAAACTATTAAGAGCTGTTTTGGCTTGACTCATTT
ACTATTTGTCATCGTACGTGCAGATCAGGCCCAGAACGTGGAATGCCATT
TTGATAAATTCGCCTTTGCACCTGTTGTTCGAACTACAGCAGCAGCAGTT
TTTCGTCCGACTTTTTCTAAACCTGTAGAAAATGGCTTTACAATAGTACA
CCATACTTTATTTTAATATGGCCGTCTGCCAATCCAAAATTTCATACAAA
ATACATCAAGGCCAGATCCCAGTTGCCTCCGGAGGTTTTACAAACACCCG
CTTAAGTAACTTCTAGTTGCAGTATGTTTGCTCGCTGCTCGAATATTTTT
GTGTATAAATAATGTATGGCGACGGAATGGGATGTTCCCACAGAGTTCAA
GTAATCATCATTTCGTGAATTATTTGTTTTTATATGTTTGGAATTCCTCG
TGAAGCACGCTGGATCAGAACGCGCCTATACCTTCTGAGCATCCTCCAGT
CAGAGTCTTTGGTGTCTCTGTTCTGTTGTAGGACGAGCACAGTAGAAGTC
GTGACGGTCGGCGCTTTATCTCGATAGAAAGTTACCCCCGGCAAACAAAG
CTTCATAGCTTTGTTCGGTTTATTCAACGAGCCGATCCGCACATGTGTAT
TCCAAGTAACTCTCGTTTCGCTGTCTTATGTACGGCCACCAGGTAAAGAG
CTCGTACAAGCTCAGCGCCGAGGCCAAGAAGCCCGCTCCTAAGCCCAAGG
TCAAGAAGGTGGTGAAGAAAGTCGTCGTTACCAAGAAGGTCGTGAAAAAG
GTCCCCAAGAAAGCCGCCAAGCCGGCCGCTAAGAAGGCTACAACCAAAAA
GGCTGCACCCACAACTAAGAAAGCCACTACTCCGAAGAAGGCCACCACCC
CTAAGAAAGCCGCCACCCCTAAGAAGGCCACCACCCCCAAGAAAACAGCC
ACCCCCAAGAAGGTCACCAAGAAGACTGCCGCAGGCCCCAAGAAGACGGT
AACCAAGAAGACCGCCGGTTCGACTGCCAAGAAGCCAACGGCCCCGAAAA
AG
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Coding sequence (CDS) from alignment at F-serratus_M_contig734:351931..353382+

>mRNA_F-serratus_M_contig734.18577.1 ID=mRNA_F-serratus_M_contig734.18577.1|Name=mRNA_F-serratus_M_contig734.18577.1|organism=Fucus serratus male|type=CDS|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig734:351931..353382+ (Fucus serratus male)
ATGCCGACCTACAATGAGATGCCGACCTACAATGAGATGGTGTTCGAAGC
AATCAAGGCCCTCAAGGAGCGCAACGGTTCCAGCATTCAGGCAATCAAGA
AGCACATCACCACCACGCACCCAACGCTCAACTTTACCCCTCACCAGATG
CGCAGCGCTCTCAAGAAGGGCGTCGAGTCCGGCAAGTTCATCAAGATGGT
GTTCGAAGCAATCAAGGCCCTCAAGGAGCGCAACGGTTCCAGCATTCAGG
CAATCAAGAAGCACATCACCACCACGCACCCAACGCTCAACTTTACCCCT
CACCAGATGCGCAGCGCTCTCAAGAAGGGCGTCGAGTCCGGCAAGTTCAT
CAAGGTAAAGAGCTCGTACAAGCTCAGCGCCGAGGCCAAGAAGCCCGCTC
CTAAGCCCAAGGTCAAGAAGGTGGTGAAGAAAGTCGTCGTTACCAAGAAG
GTCGTGAAAAAGGTCCCCAAGAAAGCCGCCAAGCCGGCCGCTAAGAAGGC
TACAACCAAAAAGGCTGCACCCACAACTAAGAAAGCCACTACTCCGAAGA
AGGCCACCACCCCTAAGAAAGCCGCCACCCCTAAGAAGGCCACCACCCCC
AAGAAAACAGCCACCCCCAAGAAGGTCACCAAGAAGACTGCCGCAGGCCC
CAAGAAGACGGTAACCAAGAAGACCGCCGGTTCGACTGCCAAGAAGCCAA
CGGCCCCGAAAAAGGTAAAGAGCTCGTACAAGCTCAGCGCCGAGGCCAAG
AAGCCCGCTCCTAAGCCCAAGGTCAAGAAGGTGGTGAAGAAAGTCGTCGT
TACCAAGAAGGTCGTGAAAAAGGTCCCCAAGAAAGCCGCCAAGCCGGCCG
CTAAGAAGGCTACAACCAAAAAGGCTGCACCCACAACTAAGAAAGCCACT
ACTCCGAAGAAGGCCACCACCCCTAAGAAAGCCGCCACCCCTAAGAAGGC
CACCACCCCCAAGAAAACAGCCACCCCCAAGAAGGTCACCAAGAAGACTG
CCGCAGGCCCCAAGAAGACGGTAACCAAGAAGACCGCCGGTTCGACTGCC
AAGAAGCCAACGGCCCCGAAAAAG
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