mRNA_F-serratus_M_contig734.18563.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig734.18563.1
Unique NamemRNA_F-serratus_M_contig734.18563.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig734.18563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig734contigF-serratus_M_contig734:79919..80366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932225.98293-CDS-F-serratus_M_contig734:79918..803381622932225.98293-CDS-F-serratus_M_contig734:79918..80338Fucus serratus maleCDSF-serratus_M_contig734 79919..80338 +
1690964206.9706373-CDS-F-serratus_M_contig734:79918..803381690964206.9706373-CDS-F-serratus_M_contig734:79918..80338Fucus serratus maleCDSF-serratus_M_contig734 79919..80338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932226.0005338-UTR-F-serratus_M_contig734:80338..803661622932226.0005338-UTR-F-serratus_M_contig734:80338..80366Fucus serratus maleUTRF-serratus_M_contig734 80339..80366 +
1690964206.986984-UTR-F-serratus_M_contig734:80338..803661690964206.986984-UTR-F-serratus_M_contig734:80338..80366Fucus serratus maleUTRF-serratus_M_contig734 80339..80366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig734.18563.1prot_F-serratus_M_contig734.18563.1Fucus serratus malepolypeptideF-serratus_M_contig734 79919..80338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig734.18563.1

>prot_F-serratus_M_contig734.18563.1 ID=prot_F-serratus_M_contig734.18563.1|Name=mRNA_F-serratus_M_contig734.18563.1|organism=Fucus serratus male|type=polypeptide|length=140bp
HHRPPSISFRRRVGAGDTNLTWQPLSRRREIISNDARDKKRWIFGVPVTR
GQRKQLTAERDIQRYLVHDHRSPQNVIFSHDAERAKRNDLCLSMAAGRTL
LLVDTTIDNGKTPFLQVRVPTNDLCAIVSPANQSSERTN*
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mRNA from alignment at F-serratus_M_contig734:79919..80366+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig734.18563.1 ID=mRNA_F-serratus_M_contig734.18563.1|Name=mRNA_F-serratus_M_contig734.18563.1|organism=Fucus serratus male|type=mRNA|length=448bp|location=Sequence derived from alignment at F-serratus_M_contig734:79919..80366+ (Fucus serratus male)
CATCATCGCCCACCCAGCATCTCCTTTCGAAGACGGGTTGGTGCAGGGGA
CACAAATCTAACCTGGCAACCACTCAGTCGGCGGCGGGAGATTATCTCAA
ACGACGCAAGAGACAAAAAGAGATGGATCTTTGGAGTACCCGTAACCCGC
GGCCAACGGAAACAGTTGACTGCCGAGAGAGACATTCAACGCTACCTCGT
TCACGACCACCGAAGTCCTCAAAACGTTATCTTCTCTCACGATGCCGAAC
GCGCCAAAAGGAACGATTTGTGTCTCTCGATGGCTGCGGGCCGAACCCTA
CTGCTTGTAGACACGACAATCGACAATGGTAAGACGCCTTTTTTGCAAGT
ACGAGTGCCCACGAATGATTTGTGCGCGATTGTGTCCCCCGCAAACCAAT
CAAGCGAAAGGACCAACTAAGCAAACCAATCAAACGAAGCCATTCTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig734:79919..80366+

>mRNA_F-serratus_M_contig734.18563.1 ID=mRNA_F-serratus_M_contig734.18563.1|Name=mRNA_F-serratus_M_contig734.18563.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig734:79919..80366+ (Fucus serratus male)
CATCATCGCCCACCCAGCATCTCCTTTCGAAGACGGGTTGGTGCAGGGGA
CACAAATCTAACCTGGCAACCACTCAGTCGGCGGCGGGAGATTATCTCAA
ACGACGCAAGAGACAAAAAGAGATGGATCTTTGGAGTACCCGTAACCCGC
GGCCAACGGAAACAGTTGACTGCCGAGAGAGACATTCAACGCTACCTCGT
TCACGACCACCGAAGTCCTCAAAACGTTATCTTCTCTCACGATGCCGAAC
GCGCCAAAAGGAACGATTTGTGTCTCTCGATGGCTGCGGGCCGAACCCTA
CTGCTTGTAGACACGACAATCGACAATGGTAAGACGCCTTTTTTGCAAGT
ACGAGTGCCCACGAATGATTTGTGCGCGATTGTGTCCCCCGCAAACCAAT
CAAGCGAAAGGACCAACTAACATCATCGCCCACCCAGCATCTCCTTTCGA
AGACGGGTTGGTGCAGGGGACACAAATCTAACCTGGCAACCACTCAGTCG
GCGGCGGGAGATTATCTCAAACGACGCAAGAGACAAAAAGAGATGGATCT
TTGGAGTACCCGTAACCCGCGGCCAACGGAAACAGTTGACTGCCGAGAGA
GACATTCAACGCTACCTCGTTCACGACCACCGAAGTCCTCAAAACGTTAT
CTTCTCTCACGATGCCGAACGCGCCAAAAGGAACGATTTGTGTCTCTCGA
TGGCTGCGGGCCGAACCCTACTGCTTGTAGACACGACAATCGACAATGGT
AAGACGCCTTTTTTGCAAGTACGAGTGCCCACGAATGATTTGTGCGCGAT
TGTGTCCCCCGCAAACCAATCAAGCGAAAGGACCAACTAA
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