mRNA_F-serratus_M_contig734.18562.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig734.18562.1
Unique NamemRNA_F-serratus_M_contig734.18562.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 1.270e-103
Identity = 166/207 (80.19%), Postives = 184/207 (88.89%), Query Frame = 3 
Query:  222 PTATLDALSYIDKDYDDPHVKQIVHSLIEEEMAAFDPPDYLADKPLPRMRFHSPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLKTLAAASE 842
            P +T DALSYIDKDYDDP +K+IVHSLIEEEMAAF+PPDYLADKPLP  RF SP+LK+EWARV+A  P+D IDTSRYDLQPPQGAAAEDE AWKRAL+N RAQTEHQHNRLLNLELLQNYGASMWLG NKAEEGTEAA+A QAKR REEAE+VN+ RK SQE AE+ L NLA+KR+EGFDKNVQIQ+ACE LRAEVKRLK L A ++
Sbjct:   16 PASTPDALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAVAK 222
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.670e-44
Identity = 94/202 (46.53%), Postives = 129/202 (63.86%), Query Frame = 3 
Query:  225 TATLDALSYIDKDYDDPHVKQIVHSLIEEEMAAFDPPDYLADKPLPRMRF---HSPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLK 821
            T  +DAL YIDK+YDDP  +++VH LIEEEMA F P +YL D+ +           IL AE ARV  G PM  +D +RY+++ P GA AED GAW+ A+ N +AQ  HQ+NR LNLELL NYGA+ WL  NKA  G E+ +    KR R+EA+ +N  R+ +Q    + L +L ++R E  DKN+QI +A   L+ ++K+ K
Sbjct:    5 TVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 206
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: W7TEH7_9STRA (Breast carcinoma amplified sequence 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEH7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.560e-35
Identity = 90/207 (43.48%), Postives = 122/207 (58.94%), Query Frame = 3 
Query:  234 LDALSYIDKDYDDPHVKQIVHSLIEEEMA--AFDPPDYLADKPLPRMRFH-SPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLKTLAAASEA 845
            LDAL YID + D P ++  V  LI EEM    F   DYLAD+P+P + F  S  +  E  RV AG PM P+D SRY  + P      D  AW+ ALNN+RAQ EH  NR++N+ELLQN+   +WL  N+  E  +  +  + +  R+EAE +N+ RK  QE+    L NL +KR E    N+++Q AC  LR E+KRL+T  A+  A
Sbjct:   26 LDALPYIDGEMD-PDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAA 231
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A4D9DBM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBM6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.780e-31
Identity = 92/208 (44.23%), Postives = 124/208 (59.62%), Query Frame = 3 
Query:  234 LDALSYIDKDYDDPHVKQIVHSLIEEEMA--AFDPPDYLADKPLPRMRFH-SPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLKTLAAASEAS 848
            LDAL YID + D P ++  V  LI EEM    F   DYLAD+P+P + F  S  +  E  RV AG PM P+D SRY  + P      D  AW+ ALNN+RAQ EH  NR++N+ELLQN+   +WL  N+  E  +  +  + +  R+EAE +N+ RK  QE+    L NL +KR E    N+++Q AC  LR E+KRL+T   ASEA+
Sbjct:   10 LDALPYIDGEMD-PDIRVRVDQLILEEMRNPRFSKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAECINLSRKTKQEEVAPRLSNLTRKRDEILYTNLELQKACAMLRMEIKRLRT-DVASEAA 215
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A1Y1W5F2_9FUNG (Breast carcinoma amplified sequence 2 n=2 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W5F2_9FUNG)

HSP 1 Score: 123 bits (309), Expect = 6.120e-29
Identity = 78/198 (39.39%), Postives = 116/198 (58.59%), Query Frame = 3 
Query:  225 TATLDALSYIDKDYDDPHVKQIVHSLIEEEMAAFDPPDYLADKPLPRMRFHSPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRL 818
            +A +D+L YIDK+YDDP ++  V SLI++EM    PP  L  K     + ++ +L+ E+ RV+AG P+   D  RY L+ P+ +  +  G W+ A  N  AQ EHQ+ RL+NLELLQ +GA+ W   N  +EG    I     R R+E   VN  RK  Q +A   LR++ ++ TEG  K ++IQ+A   L+ E+ +L
Sbjct:    5 SAAIDSLPYIDKEYDDPSMRDQVSSLIQKEMGRMSPP--LLPKSTTLFK-NNDLLRKEYERVRAGKPLPEFDIERYKLEAPEDS--DSVGIWRSAAENAAAQLEHQNIRLVNLELLQQFGANSWKLSNYQKEGLLRNIEKATDRHRDEGINVNKARKYEQTEAGIRLRDIEERWTEGVKKCIEIQVASSELKGEIAQL 197
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A196SKK8_BLAHN (Pre-mRNA-splicing factor SPF27 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKK8_BLAHN)

HSP 1 Score: 122 bits (307), Expect = 1.560e-28
Identity = 72/197 (36.55%), Postives = 116/197 (58.88%), Query Frame = 3 
Query:  234 LDALSYIDKDYDDPHVKQIVHSLIEEEMAAFDPPDYLADKPLPRMRFHS-PILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLK 821
            LD+L YIDK+YD+P ++  V SLI+EEM  F P +YLA+ P+P ++F S P L+ EW R+K   P+   D ++Y L+ P G  A  E AWK+++   + Q E+Q +++ NL+LL+ +G++ +   N   + +   +       +E+   VN  RKM QE A   L N   +  E   KN QI+ +CE + +++K+ K
Sbjct:   18 LDSLPYIDKEYDEPGMQDYVDSLIQEEMKTFHPRNYLAEWPMPELKFDSNPELQQEWQRIKEKKPLQGFDVNKYTLEEPSGDMALSEEAWKKSIEAAKIQLEYQKDKMENLQLLEQFGSNAYRMQNDCIDASNEKMDRDLADLQEKTGVVNRKRKMDQEAAGEKLMNTEWQILELQMKNYQIERSCEAMESQLKKQK 214
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A0M0JYG4_9EUKA (Pre-mRNA-splicing factor spf27-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JYG4_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 2.100e-27
Identity = 80/212 (37.74%), Postives = 106/212 (50.00%), Query Frame = 3 
Query:  222 PTATLDALSYIDKDYDDPHVKQIVHSLIEEEMAAFDPPDYLADKPLPRMRF-HSPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLKTLAAASEASKR 854
            P   +DAL YID  Y+DP +K  V SL++ EM  F P +YLA  P   + F    +L+ EW RV    PM  +DT RY L+PP      D  AW+RA+ N  AQ EHQ  RL NLEL+Q +GA  W       +   A +   A+   E  E VN  RK  Q  A   L  L  +      KN++I+ AC  L AE   L+     + ++ R
Sbjct:   20 PHIEIDALPYIDSQYNDPEMKARVDSLVQAEMRTFRPGNYLAHLPEHEVNFPEDSVLQYEWMRVCEQQPMSKMDTKRYQLEPPPPEQRNDPEAWQRAVRNAEAQLEHQSTRLGNLELMQQHGAHQWRAQLNELDVASAQLKRAAEEVDERIELVNRRRKTEQLAAAPRLAALEAEWVSSVKKNLEIESACLQLEAECAGLRNAVEVATSAPR 231
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A9SH09_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH09_PHYPA)

HSP 1 Score: 119 bits (298), Expect = 5.730e-27
Identity = 83/201 (41.29%), Postives = 116/201 (57.71%), Query Frame = 3 
Query:  231 TLDALSYIDKDYDDPHVKQIVHSLIEEEM--AAFDPPDYLAD-KPLPRMRFHS-PILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLK 821
            T+DAL YID DY DP VK  V  +I EEM  ++  P D+LA+  P+P +     P+L  E+ RV+AG     +D SRY L+PP      D GAWK A+ N +AQ +HQ  RL NLEL+ NYG + W+  N+  E  +A +   A   + E E +N  RK++Q+ A   L  L+ +  E   KN+ I+ AC  L AEV +L+
Sbjct:   31 TVDALPYIDHDYADPKVKAEVDKMIAEEMRLSSKKPSDFLAELPPVPSINAQDHPMLAKEFDRVRAGKAPVALDLSRYGLEPPPVNKRNDVGAWKSAVQNAKAQLQHQTLRLENLELMLNYGTTAWIVHNQHLEAFQARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAEVLKLR 231
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A200R445_9MAGN (Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R445_9MAGN)

HSP 1 Score: 116 bits (290), Expect = 8.360e-26
Identity = 77/205 (37.56%), Postives = 115/205 (56.10%), Query Frame = 3 
Query:  234 LDALSYIDKDYDDPHVKQIVHSLIEEEM--AAFDPPDYLAD-KPLPRMRFHS-PILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKM-SQEDAERPLRNLAQKRTEGFDKNVQIQMACETLRAEVKRLKTLAA 833
            +D+L YID DY DP+VK++V  L+EEEM  +   P DYL D  P P+  F + P+L  E+ RV+AG P   ++ SRY L+PP G    D  AWK  L N ++  +HQ  RL NL+L+  +G  +W   N+  E   + +   A+   E  E VN  RK   Q++    L  L+ +  E  +KN++IQ AC  +   ++ L++ AA
Sbjct:   28 IDSLPYIDDDYGDPNVKEVVDKLVEEEMRRSTKKPADYLKDLPPAPKSNFENHPMLAREYERVRAGKPPVTLEMSRYGLEPPPGNKWNDANAWKLHLENAQSSLQHQIVRLENLDLMSKHGGDIWKHHNQRLEAFLSRMQAMAQGYNERIESVNRERKYHQQQNTAVELNALSMQWKELCEKNIEIQSACAAIENHIEGLRSEAA 232
[Close]
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Match: A0A2T9YPW6_9FUNG (Uncharacterized protein n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YPW6_9FUNG)

HSP 1 Score: 112 bits (279), Expect = 8.200e-25
Identity = 70/191 (36.65%), Postives = 104/191 (54.45%), Query Frame = 3 
Query:  225 TATLDALSYIDKDYDDPHVKQIVHSLIEEEMAAFDPPDYLADKPLPRMRFHSPILKAEWARVKAGHPMDPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQNYGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLRNLAQKRTEGFDKNVQIQMACETL 797
            T  +DAL Y+DK+YDDP +K+IV  LI +EM      D         +   +P++++E+ R + G  M P DTSRY LQPP G+A  D   W++++ N ++Q EHQ  R+ NLELL  YG   W+  N   E     ++ + + ++EE   VN  RK  Q +A   L NL     E   K  Q+++A  +L
Sbjct:    3 TVNIDALPYVDKEYDDPGMKKIVDDLISDEMKNNISKDKFTIPKSETIFKKNPLMRSEYERKRRGENMAPFDTSRYRLQPPSGSAENDPKEWEKSMKNAKSQLEHQDIRIENLELLSMYGQRSWVMHNDFLEKYSDILSKELETSKEEVLHVNKSRKYEQTEAMIKLSNLESLWAERVYKIAQLKVAIASL 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig734.18562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE1.270e-10380.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMV2_9STRA3.670e-4446.53Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema m... [more]
W7TEH7_9STRA8.560e-3543.48Breast carcinoma amplified sequence 2 n=1 Tax=Nann... [more]
A0A4D9DBM6_9STRA2.780e-3144.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Y1W5F2_9FUNG6.120e-2939.39Breast carcinoma amplified sequence 2 n=2 Tax=Lind... [more]
A0A196SKK8_BLAHN1.560e-2836.55Pre-mRNA-splicing factor SPF27 n=1 Tax=Blastocysti... [more]
A0A0M0JYG4_9EUKA2.100e-2737.74Pre-mRNA-splicing factor spf27-like protein n=1 Ta... [more]
A9SH09_PHYPA5.730e-2741.29Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A200R445_9MAGN8.360e-2637.56Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya co... [more]
A0A2T9YPW6_9FUNG8.200e-2536.65Uncharacterized protein n=1 Tax=Furculomyces boome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig734contigF-serratus_M_contig734:71911..79201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue2e-76
Seed eggNOG ortholog2880.D8LQA4
Preferred nameBCAS2
KEGG koko:K12861,ko:K13336,ko:K20161
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.mRNA processing
EggNOG OGsKOG3096@1,KOG3096@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005540.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
Exons3
Model size1598
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig734.18562.1prot_F-serratus_M_contig734.18562.1Fucus serratus malepolypeptideF-serratus_M_contig734 72039..78469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932226.585163-UTR-F-serratus_M_contig734:71910..720381622932226.585163-UTR-F-serratus_M_contig734:71910..72038Fucus serratus maleUTRF-serratus_M_contig734 71911..72038 +
1690964207.2730722-UTR-F-serratus_M_contig734:71910..720381690964207.2730722-UTR-F-serratus_M_contig734:71910..72038Fucus serratus maleUTRF-serratus_M_contig734 71911..72038 +
1622932226.655429-UTR-F-serratus_M_contig734:78469..792011622932226.655429-UTR-F-serratus_M_contig734:78469..79201Fucus serratus maleUTRF-serratus_M_contig734 78470..79201 +
1690964207.3260949-UTR-F-serratus_M_contig734:78469..792011690964207.3260949-UTR-F-serratus_M_contig734:78469..79201Fucus serratus maleUTRF-serratus_M_contig734 78470..79201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932226.5995958-CDS-F-serratus_M_contig734:72038..724601622932226.5995958-CDS-F-serratus_M_contig734:72038..72460Fucus serratus maleCDSF-serratus_M_contig734 72039..72460 +
1690964207.2854414-CDS-F-serratus_M_contig734:72038..724601690964207.2854414-CDS-F-serratus_M_contig734:72038..72460Fucus serratus maleCDSF-serratus_M_contig734 72039..72460 +
1622932226.6195052-CDS-F-serratus_M_contig734:76585..766821622932226.6195052-CDS-F-serratus_M_contig734:76585..76682Fucus serratus maleCDSF-serratus_M_contig734 76586..76682 +
1690964207.2981699-CDS-F-serratus_M_contig734:76585..766821690964207.2981699-CDS-F-serratus_M_contig734:76585..76682Fucus serratus maleCDSF-serratus_M_contig734 76586..76682 +
1622932226.6371968-CDS-F-serratus_M_contig734:78250..784691622932226.6371968-CDS-F-serratus_M_contig734:78250..78469Fucus serratus maleCDSF-serratus_M_contig734 78251..78469 +
1690964207.3109674-CDS-F-serratus_M_contig734:78250..784691690964207.3109674-CDS-F-serratus_M_contig734:78250..78469Fucus serratus maleCDSF-serratus_M_contig734 78251..78469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig734.18562.1

>prot_F-serratus_M_contig734.18562.1 ID=prot_F-serratus_M_contig734.18562.1|Name=mRNA_F-serratus_M_contig734.18562.1|organism=Fucus serratus male|type=polypeptide|length=246bp
MEARIDSSIAAVVAQGRSTRDSGMAQQPEAVPTATLDALSYIDKDYDDPH
VKQIVHSLIEEEMAAFDPPDYLADKPLPRMRFHSPILKAEWARVKAGHPM
DPIDTSRYDLQPPQGAAAEDEGAWKRALNNIRAQTEHQHNRLLNLELLQN
YGASMWLGDNKAEEGTEAAIAVQAKRTREEAEQVNVLRKMSQEDAERPLR
NLAQKRTEGFDKNVQIQMACETLRAEVKRLKTLAAASEASKRTSP*
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mRNA from alignment at F-serratus_M_contig734:71911..79201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig734.18562.1 ID=mRNA_F-serratus_M_contig734.18562.1|Name=mRNA_F-serratus_M_contig734.18562.1|organism=Fucus serratus male|type=mRNA|length=7291bp|location=Sequence derived from alignment at F-serratus_M_contig734:71911..79201+ (Fucus serratus male)
CCCAGTTCCCGTTGACGGACAAGCACTCGCCGATTGTCGTCTGTAAGAAA
AAAAATAACGACTGGAGTGGTTATTCTATTTCCTGTCCACCTATCAGCCA
GATCGTTTGTTGCGCTTAATATTCTCCCATGGAGGCGAGGATCGACTCCA
GTATCGCTGCTGTTGTTGCCCAGGGTCGCTCGACGAGGGACAGCGGTATG
GCACAGCAACCTGAGGCGGTGCCGACCGCAACACTAGACGCCCTCTCATA
CATAGACAAGGACTACGATGATCCTCACGTCAAGCAAATCGTGCATTCTC
TCATCGAAGAAGAGATGGCAGCGTTTGATCCGCCCGACTACCTCGCTGAC
AAGCCTTTGCCAAGGATGCGATTTCATAGCCCGATTCTCAAGGCAGAGTG
GGCGCGCGTCAAAGCGGGGCACCCGATGGACCCCATCGATACGTCGAGGT
ACGATCTTCAACCTCCACAGGGCGCGGCGGCGGAGGATGAGGGCGCATGG
AAGCGTGCGCTGAACAACATTCGCGCGCAGACGGAGCACCAGCACAACAG
GTACCAACTGTACAAGCAGTCGAGAGACCAGATTGATTGATGCAGATACA
TTTTTGACTCGCCGACAGCAGCAGTAGACTATAATAGTAGCTCAATTGCT
AATTATCACGACCGTACGAACATAATTTCTCGACGAGTACCGTAGGATCC
TTCCTTTCTCTGGAGATGTCCCTTTTTCCAAGTATGTACTGTTTTGTATG
TATGGTCATATCATATGGCAGAGTATGGATCAACCGGGGTAAGGATCCCA
ATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGTTGTCAAACCGTCTTTC
TCATGGATCTACTTGTAGGGCCTCGTCTGTGTGTGTATCCATTGAACTCT
TAATACGGTAGCCCCGGTAGCTCAGTTTGTAACCTCGTAACCTTCTGACA
TGTTGGGACGTGAGTTCGAATCCCGGTAACTGGGATTTTTCCTCACTAAA
CAAAAAAAAAGTGGATAACGCATTTAATCGTCAAGACAAAATTCGACACA
AGGGAAAGGAACGGCTGGATCCTTCTCGCGAGAAAAATAAAGGCATGCAC
CGCAAAAGCAAGGTGGATGAAAATATCCTGTGTGACCTTCCTCCTGTGTG
ATCTCGGCTGGTACATCCAACGAACTTGACGTCCAGAATAAATGGGAAGA
AAACACAAAACACAGTACGCAGCTGCACTGTACTGTGTAATATCTATATT
AGCTCTACAGCGGTATTTATTTATTTATTTATTTTATTTTAATCTCACTT
ACAACCAATAGACCTCATTACCATCCTGCCTGTGGTCACTAAGGATCTTC
CCATCTCTCCCTGGTTCACGCCTTACAATTTTTTATCGCGATGCAAGTTC
AGCAATCTTACAACTCGCCAACCAATGGTTGGATTTTACTTATTCGCGTT
CCCACGCTTTCCGTTACGGAAGAAAGAACACAAACCCCACTTTGGTAAGA
ATCGAACTCACGACTTCCGCACTAGCAGGTGTGTGCAGATTACCTACTAG
ACCACTCGAGTGACGAGTGAATGACTATATATATACATGGGCAAAATGCC
GTGTACCTTACCTGTACAGGAGGTGTCCAGCACCACATGGCTTGTCGCTG
GAGCAGTAGGCGATGCTGTCTTGTATCTACACGAGTATTCATCGAATTAC
ACCCGTGTCCTCTCCCTCCGATAGAATAAACCTGGTTTCGGGGTATGAGT
GTGGGAGGGTCTTTCCGGCGGGTGTAGGGCCGGACTCACCCTCGAAAGAT
GCAGCCAACTGGCTGCCTTCGCGATTCGGCCTGTCGGTTGAGGCGCGGCG
GTGGTATGGTTGGCTGTGGATGGTGTTCCCAGGTGTGCACCCCTTCCGAG
CTCCAATCTGGTGCCCTTCGGGAGGGTGGCGGCACTCGAGAGGCAGGGAG
TACTGTCGCGGAGAGCCTGGTAGTGCCCTATCGAGTAGGTACTCACCAGA
TTCGGTGAAGGTGGAGGGCAGCTCAATCGTCGGCAAGCCAGCGGAGGGCT
GAACCCCTGTGCGCCAGAATCGAAGGCGTGAACCGGGAGGTTTCTGAGGG
AAAAGCTGATGTCTGACCACAGTGATTTTTCTTCCTACGAAGGCCACAAG
GAGCGGCGAAAAGATTCGGCTTTTTCAAGGAGGGCTTTGGACGGCTGTAT
GCTGGCTCGCGCGCCGGCTTCACCAGCTCAAGGCCTCCACCACCATAGAC
CTCGACATTTCAATTTTCCTTATTTTTGTACGATGTGTGGCCTTTAGACA
CTTTAGACTTGTTGATCAGAACTGGTTGGAGCGTAATTTGTCCGCTTTGT
TGCTGAGAACGCTGGTCGTGGGTAGGCGACAGCGATCCGAGTCGATCGAG
GCTGCTCTCGATATGGAGTAAGGAGGTTACATGAACCGTTTTGATATTGG
TCGGTGCCATTGCATGTAGAGTCGCATAACTTTTTTGTCGCGATTTGGAT
CCCTGTTGGCTTGAGTAGCGGGTTGTCACCATGGTGTGACCCGTTGACCT
TGATACCTCGTCGTGACCACAAGCAGGATTAGCATTGGATAGGTCTATGG
CTGACTTGTTGTGCCACGTAGTTTCTTCAGTTGCAAGGACAATATCATAT
GATGAATGTGCGAATCAAGAACAACGATATCATGGTGCATTCCGGCCTTG
TTGTATGATTAATGATTATTTTTTTTTAAAGTGGTACAGTATTATTTTAC
TTCCATCTGTCCTCTCGACAAGGGATCAACGATTGGTGTTTACTGCATCG
AAAAACCTTGTTAACCTTGTTCGGGTACGCGGTTGTCGATCCGATTCGCG
GTCAGCTGGACAGTAAAAGCTTTAGCTTTAGCTTTGGAGCTACTTCAAAA
AAAAAGTAGTACGACCCGAACTGTTTATATCCAATGCTGATGGTAGCGCT
GATGGCGTCGGCTACCCGTGTTTTTCAACTTGGGATCGCTAGCAGCCAGA
TTTTTTCCTAGGAGCTTTTTCCATACATATTAGAAGAGATATCGTGAAAT
TTAGAGAAGTTCGCGGTCGGTACCGCGTGAAAGCTTGGAGTTGTGGGAGA
GTCAATCCCCTCGAACTGCGAGGTTTGACACTGATTGGCTGGACTGGATG
GCTGGACTCCATTCGTGAGTGCTGTAGTGAACATGAGCTTTAAGAGGTAC
AGCACAGTGGTACCGAGAGTTTTAATTTTCAGAAAAACATTACGAGTATC
CTATTATACTTGAAGGCGAGATGAAAAACTCGTTTTTTCTCGTTCTGCTG
CTCTCAGGGATTTTCAACGTGATCGTTAGGCCCACGAATTAATCCCCGCC
TCGCCCGTGCAAATGCTACTTACTAAAGGCTACTCTAAAGACTACTACGG
TGTGATGTGACCAACCTCTAGCGGGGTTAAGGTTTGGGAGACGGAGCTGG
GCAGTTTACATAGCACAGAGTGCAGCAGTAGTTACACAGTACATAATTAG
TTTGTTACAAGGGCTCTGGACGTGGGGGCCTGGAGGGTGTTTACCGCCCC
CCGTTGAGAGTCCGAGGAGGCGTTTGTGTTTGTATTGAGCGGTACGCATG
AACTGTATAGTTTATACAGTATAATATATACAGTATAGTGTATATAGTAT
ATACAGTAGCATGTGGCCCCGACGTAAAAAAGGGGAGTGAAAGAATGCGT
ACGCCCTGCGTGCTACGGTTCATAAAAGTTGTCTGAACAGAATTTGAACC
CGCACTTTGTTGTTGAAAAAGGTCAAAAACTAAAAATCGCTTCTGAAATC
ATTGTATCATAGTCTGGCGACTTTTCTTCGGCGGTATCTATTCTGGACCT
CCCTGAACGACCGGTTCACGTCGAAGCATGAAACAACTCAAAACTTATGA
GATTTCTACCTAAAACGACATAAATATGGTATGAAAATGTATCAAATGTA
TCGCAAAATCTAGGAGGCCAAGCTGTCCATGTTCTACGCACAAACGAAAG
CTGCCCGGGTAAAACGGGCCTAAAGCCCGCAGGAGGGGGGTTGAGATGGA
AATACTTTCTCTGTCGATGGCATGCGCTCGTCAATGGCTGTCTGTATAGA
TGCCGCACGATGATGGTAAAGAGATGTGTGAGTATGGAGAAACGCGTGTG
GACCTTGACACGAAACACACACACACACACATGACAGTCCCGCGAAGAAA
GGAAGAACGATGAACGTGCGAAATTAAAGATTGAAGCGTGCTTCGGGGTT
TTTCAGCTCGGCTCGCGCGTCGAAGCAGGGGGGTTGAGATGGAAAGACTT
TCCTTGTTTACCCCGCGAAGGAGGAAAGTCGAGCAAGATTTGCGTGCGAG
CGAGCCACAGGACTGAAGAAAGCATCTTGATCCCGCTTCATGTTTGAGTT
GACCCGCTTCGCTCACGGCGGCTTATCATTGAACTAAAGTTTTTTCAAGG
TAATAATAGTTACCTCTATATAATTATGATCTTTGAGAGCGTTACTTAAT
CAACCCTTGCAATCAAATCTCGCCCCCATCATGCCGTCCGTACGAGTTCT
CGGCGTACGAGCTTGAGAGTCCTGAGGTGTTCCTCTGATACGCCACCATG
CCGTAAGAGCACGAGAGTGACATTTTGACATTCTCCGGGCTCCTTGTGGT
TTGCTGCTCGGCCCGGTCGAAACAGGTTGCTCAATCTGGAGCTGCTGCAA
AACTACGGAGCTAGCATGTGGTTAGGGGACAACAAGGCGGAAGAGGGCAC
GGAGGCGGCGATAGCGGTACAGGTAAAGAATAGGTCGATCGATCGATCGA
TTGATGCTGTGTGGTGGGCGTTACGTTCCGGGGATTATTCGCTAATAACA
GCCTTCTCACAGAGCCTGGCCAAGCCGAAAATATCTGTAGTCGAGCCAAA
AAGTTACTTTGAATTACTATGGGAAACTGTCGCCGTTACCGCAGAGAAAG
AAAGAGCTCGTACAGCTTTTAATGTCTGGGCTTTTGTTCCAATTGCTGCC
TTAGCTGATCTTGCTGCTCCTCCTGAGTGGCTGATGTAGTGTAGGTTCTG
ATTGAGATGTATTCATAGGTTTTTATGCCGATTCAGGCGTTCATCCTTTG
GTCGTGTACACTCAATAGCTGCGGCCGACTACAATAGTACCGTGTTAGAC
CCACAAACGATATCTTATCAGTTGCTCCTGCACTCGAGGTGGTGTCTTTA
TACAACGGTCCCCTGATACAATTCACACTTTTGTGACCCAGCGCTAGGCG
GGACAGCCGGGGATACGAGATCGCTCCGAAATTGAGTCACCCTTGAAATT
GAATCCAACCGCCTCCGAAGTAGGTAGAAACCCACCTTCGTTTTGATGAG
AGGTATCTCCACATACAATTCGAGCTGTCACGTTAGTAACTCTCTCAACA
CTGCTAGTAGCATGTACTTACATACGGTATGATACGGTATGGTACGGTAT
CTACTGTACAGTACCATTTTCGGGTAACGGGCACTCACAACTCGCAAGAC
AAGACAACGTAGTCGCGCGGGCGGAATGGTTCAGGACGTTCAATCCGCTT
TTGGTGGAATTGACTCCCAGGCAACGGAATAATCTACCCGACTAAGTATC
AGTAAATGCGAAAGCTGTGACCGCCTTGTTCCCTAGCGTTGTCTTTCTCT
ATGGAGTTTTCATTTTGACACACTCCCGTTGCTACCGCGATCCCCCCTCT
AACGATTCCTTTGAACGGTAACACTATCTTTCAAGGAACAGTCACACTAT
ATTTCGCCCCCCCGAACGTGTTTAAAGAAAATTCACAACGCGCCTATACC
TTCTAGGCATCCCCCAGTTAGGAGGGGAAAATGTCAAAACGTTTAGGTGG
GATCAAAGCAAAGGCTGCAAATACAAAACCTCTTCATGGCATTTTAACGG
GTTTCCCTATGGTAGTAACATTGGGTCAACAGTATCAACATGTTATTGCG
GCGGTTACTATTTTTTCGGAGGGACTAAAAATGAAACGCCCCCCAAACGT
TTTGTTGCGGCGATTACTACTATTTCGGAGGGACTCAAAATGAAACGGTC
ACACAACGGTTTCCGGCGGCGTGTCACGACTACAGTATTTTGGGTGGCAA
TCGAGTCGGCGTTTTGTTTTCCGCTAAAGTCATACGGTTCATTGTAATAT
ATTAACAATAAGAGCAGTGCTACTTGGAGAGCAATAAGCACCCCCCCCCC
TCCCCCCCCATCCTCTCGCAATCCTTCAGTAATAAAATCAGTATACTATT
ATTAGTACCAAAACGATCGTATAATAACGCGAGCAAATCTTTCCCCTCCC
CGATCCCCGCTCTCAATATGCGTAATCGATGGAAAACTAGGCAAAGAGGA
CTCGGGAGGAAGCAGAGCAAGTCAACGTACTTCGAAAGATGTCGCAGGAG
GATGCGGAGAGGCCCCTGCGGAACCTGGCCCAAAAGAGAACGGAGGGCTT
CGACAAAAATGTACAGATACAGATGGCGTGCGAGACGCTGAGGGCGGAGG
TTAAGAGACTCAAGACGCTAGCAGCCGCTTCAGAAGCATCTAAGAGAACC
TCGCCTTGATGTGAAACTTGAAAGAATCAGGCGTCAGGAAGTTAGCGAGC
TCTTTTTGGCAGCTCTTTCCTTTTTTTTGTAGAGTAGGCCCTCATGAGCG
TCCGCCTCGAAAGAGCGCTCAAGGGCTGGCCACTACGTTAGGGCTAGGCT
AGAGTAGGAAAATGCTTGCATGTGCTTTTGGCGCCCTAATAGCTATTAAT
AGCTTTGGGCGTTAGTAGGAATAGTATAGTAGTGTGTTGGGAGGGGAAAA
ACGACAACTTCAATCTGTTCCCCGTCGTGGCACAGTAGTTGGAGCGTTTT
GAATCGAAAGCGGCAGGAGTCTTGATAGAATTGGAAGAGATCTCCAGTAC
TGTGGTCTTGATTTCTTGATAGCGGTGGCGCAGGGGAGTCTTGCTAGAAT
TGAAAGAAATGTCCAATAGCTCCAGTACTGTAGTACAATAAATGCCGTAG
GCGTACGGACTAGGATGTTCCCTATTCATAGAAAGATGAAAAACCGGCCG
TTGGTTGTTTTGGAGTTTTTAGAGCTACTGCTGTAGGCTTCTAGCGCCGG
AACAGCGGGGGGTGGAAGAGAACGTTTCCCTTTTACCCTTTTCGCAAGGT
TTAATGATTCTTCCAATGTCTCCCGTCGGTATAGTATAGGTTGTGGTCAC
TTCTTGATGCATGATATGTACTGGTATTAGAAAATGATGTACTGTGAAAA
GTTATGTATTACTATTAATAACACTGATACGGAAAGCGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig734:71911..79201+

>mRNA_F-serratus_M_contig734.18562.1 ID=mRNA_F-serratus_M_contig734.18562.1|Name=mRNA_F-serratus_M_contig734.18562.1|organism=Fucus serratus male|type=CDS|length=1476bp|location=Sequence derived from alignment at F-serratus_M_contig734:71911..79201+ (Fucus serratus male)
ATGGAGGCGAGGATCGACTCCAGTATCGCTGCTGTTGTTGCCCAGGGTCG
CTCGACGAGGGACAGCGGTATGGCACAGCAACCTGAGGCGGTGCCGACCG
CAACACTAGACGCCCTCTCATACATAGACAAGGACTACGATGATCCTCAC
GTCAAGCAAATCGTGCATTCTCTCATCGAAGAAGAGATGGCAGCGTTTGA
TCCGCCCGACTACCTCGCTGACAAGCCTTTGCCAAGGATGCGATTTCATA
GCCCGATTCTCAAGGCAGAGTGGGCGCGCGTCAAAGCGGGGCACCCGATG
GACCCCATCGATACGTCGAGGTACGATCTTCAACCTCCACAGGGCGCGGC
GGCGGAGGATGAGGGCGCATGGAAGCGTGCGCTGAACAACATTCGCGCGC
AGACGGAGCACCAGCACAACAGATGGAGGCGAGGATCGACTCCAGTATCG
CTGCTGTTGTTGCCCAGGGTCGCTCGACGAGGGACAGCGGTATGGCACAG
CAACCTGAGGCGGTGCCGACCGCAACACTAGACGCCCTCTCATACATAGA
CAAGGACTACGATGATCCTCACGTCAAGCAAATCGTGCATTCTCTCATCG
AAGAAGAGATGGCAGCGTTTGATCCGCCCGACTACCTCGCTGACAAGCCT
TTGCCAAGGATGCGATTTCATAGCCCGATTCTCAAGGCAGAGTGGGCGCG
CGTCAAAGCGGGGCACCCGATGGACCCCATCGATACGTCGAGGTACGATC
TTCAACCTCCACAGGGCGCGGCGGCGGAGGATGAGGGCGCATGGAAGCGT
GCGCTGAACAACATTCGCGCGCAGACGGAGCACCAGCACAACAGGTTGCT
CAATCTGGAGCTGCTGCAAAACTACGGAGCTAGCATGTGGTTAGGGGACA
ACAAGGCGGAAGAGGGCACGGAGGCGGCGATAGCGGTACAGGTTGCTCAA
TCTGGAGCTGCTGCAAAACTACGGAGCTAGCATGTGGTTAGGGGACAACA
AGGCGGAAGAGGGCACGGAGGCGGCGATAGCGGTACAGGCAAAGAGGACT
CGGGAGGAAGCAGAGCAAGTCAACGTACTTCGAAAGATGTCGCAGGAGGA
TGCGGAGAGGCCCCTGCGGAACCTGGCCCAAAAGAGAACGGAGGGCTTCG
ACAAAAATGTACAGATACAGATGGCGTGCGAGACGCTGAGGGCGGAGGTT
AAGAGACTCAAGACGCTAGCAGCCGCTTCAGAAGCATCTAAGAGAACCTC
GCCTTGAGCAAAGAGGACTCGGGAGGAAGCAGAGCAAGTCAACGTACTTC
GAAAGATGTCGCAGGAGGATGCGGAGAGGCCCCTGCGGAACCTGGCCCAA
AAGAGAACGGAGGGCTTCGACAAAAATGTACAGATACAGATGGCGTGCGA
GACGCTGAGGGCGGAGGTTAAGAGACTCAAGACGCTAGCAGCCGCTTCAG
AAGCATCTAAGAGAACCTCGCCTTGA
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